diff options
author | asau <asau@pkgsrc.org> | 2012-05-28 18:38:17 +0000 |
---|---|---|
committer | asau <asau@pkgsrc.org> | 2012-05-28 18:38:17 +0000 |
commit | 3f7405b800721bb4d320d5eb0df5bad24c488112 (patch) | |
tree | 9667671067c2e1c16d0af9bdf6724c69e507b4b6 | |
parent | 1cfe68d980b558ce20f0daf3b7e2d89c9cb91402 (diff) | |
download | pkgsrc-3f7405b800721bb4d320d5eb0df5bad24c488112.tar.gz |
Update to OpenMPI 1.5.5
Changes in 1.5.5
----------------
- Many, many portability configure/build fixes courtesy of Paul
Hargrove. Thanks, Paul!
- Fixed shared memory fault tolerance support compiler errors.
- Removed not-production-quality rshd and tmd PLM launchers.
- Minor updates to the Open MPI SRPM spec file.
- Fixed mpirun's --bind-to-socket option.
- A few MPI_THREAD_MULTIPLE fixes in the shared memory BTL.
- Upgrade the GNU Autotools used to bootstrap the 1.5/1.6 series to
all the latest versions at the time of this release.
- Categorically state in the README that if you're having a problem
with Open MPI with the Linux Intel 12.1 compilers, *upgrade your
Intel Compiler Suite to the latest patch version*, and the problems
will go away. :-)
- Fix the --without-memory-manager configure option.
- Fixes for Totalview/DDT MPI-capable debuggers.
- Update rsh/ssh support to properly handle the Mac OS X library path
(i.e., DYLD_LIBRARY_PATH).
- Make warning about shared memory backing files on a networked file
system be optional (i.e., can be disabled via MCA parameter).
- Several fixes to processor and memory affinity.
- Various shared memory infrastructure improvements.
- Various checkpoint/restart fixes.
- Fix MPI_IN_PLACE (and other MPI sentinel values) on OS X. Thanks to
Dave Goodell for providing the magic OS X gcc linker flags necessary.
- Various man page corrections and typo fixes. Thanks to Fujitsu for
the patch.
- Updated wrapper compiler man pages to list the various --showme
options that are available.
- Add PMI direct-launch support (e.g., "srun mpi_application" under
SLURM).
- Correctly compute the aligned address when packing the
datatype description. Thanks to Fujitsu for the patch.
- Fix MPI obscure corner case handling in packing MPI datatypes.
Thanks to Fujitsu for providing the patch.
- Workaround an Intel compiler v12.1.0 2011.6.233 vector optimization
bug.
- Output the MPI API in ompi_info output.
- Major VT update to 5.12.1.4.
- Rankfile 'P'hysical mapping is no longer available.
- Upgrade embedded Hardware Locality (hwloc) v1.3.2, plus some
post-1.3.2-release bug fixes. All processor and memory binding is
now done through hwloc. Woo hoo! Note that this fixes core binding
on AMD Opteron 6200 and 4200 series-based systems (sometimes known
as Interlagos, Valencia, or other Bulldozer-based chips).
- New MCA parameters to control process-wide memory binding policy:
hwloc_base_mem_alloc_policy, hwloc_base_mem_bind_failure_action (see
ompi_info --param hwloc base).
- Removed direct support for libnuma. Libnuma support may now be
picked up through hwloc.
- Added MPI_IN_PLACE support to MPI_EXSCAN.
- Various fixes for building on Windows, including MinGW support.
- Removed support for the OpenFabrics IBCM connection manager.
- Updated Chelsio T4 and Intel NE OpenFabrics default buffer settings.
- Increased the default RDMA CM timeout to 30 seconds.
- Issue a warning if both btl_tcp_if_include and btl_tcp_if_exclude
are specified.
- Many fixes to the Mellanox MXM transport.
-rw-r--r-- | parallel/openmpi/Makefile | 5 | ||||
-rw-r--r-- | parallel/openmpi/PLIST | 20 | ||||
-rw-r--r-- | parallel/openmpi/PLIST.vt | 22 | ||||
-rw-r--r-- | parallel/openmpi/distinfo | 11 | ||||
-rw-r--r-- | parallel/openmpi/patches/patch-aa | 18 |
5 files changed, 53 insertions, 23 deletions
diff --git a/parallel/openmpi/Makefile b/parallel/openmpi/Makefile index be3fb3f9546..5114f9b57dc 100644 --- a/parallel/openmpi/Makefile +++ b/parallel/openmpi/Makefile @@ -1,7 +1,6 @@ -# $NetBSD: Makefile,v 1.13 2012/05/21 16:08:51 marino Exp $ +# $NetBSD: Makefile,v 1.14 2012/05/28 18:38:17 asau Exp $ -DISTNAME= openmpi-1.5.4 -PKGREVISION= 1 +DISTNAME= openmpi-1.5.5 CATEGORIES= parallel MASTER_SITES= http://www.open-mpi.org/software/ompi/v1.5/downloads/ EXTRACT_SUFX= .tar.bz2 diff --git a/parallel/openmpi/PLIST b/parallel/openmpi/PLIST index 32c79c77d7a..719d9377f2c 100644 --- a/parallel/openmpi/PLIST +++ b/parallel/openmpi/PLIST @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.7 2011/08/27 19:32:55 asau Exp $ +@comment $NetBSD: PLIST,v 1.8 2012/05/28 18:38:17 asau Exp $ bin/mpiCC bin/mpic++ bin/mpicc @@ -89,14 +89,14 @@ lib/openmpi/mca_coll_sm.la lib/openmpi/mca_coll_sync.la lib/openmpi/mca_coll_tuned.la lib/openmpi/mca_crs_none.la -lib/openmpi/mca_debugger_mpir.la -lib/openmpi/mca_debugger_mpirx.la lib/openmpi/mca_dpm_orte.la lib/openmpi/mca_errmgr_default.la lib/openmpi/mca_ess_env.la lib/openmpi/mca_ess_hnp.la lib/openmpi/mca_ess_singleton.la lib/openmpi/mca_ess_slave.la +lib/openmpi/mca_ess_slurm.la +lib/openmpi/mca_ess_slurmd.la lib/openmpi/mca_ess_tool.la lib/openmpi/mca_filem_rsh.la lib/openmpi/mca_grpcomm_bad.la @@ -107,6 +107,7 @@ lib/openmpi/mca_iof_hnp.la lib/openmpi/mca_iof_orted.la lib/openmpi/mca_iof_tool.la lib/openmpi/mca_maffinity_first_use.la +lib/openmpi/mca_maffinity_hwloc.la lib/openmpi/mca_mpool_fake.la lib/openmpi/mca_mpool_rdma.la lib/openmpi/mca_mpool_sm.la @@ -118,7 +119,7 @@ lib/openmpi/mca_osc_pt2pt.la lib/openmpi/mca_osc_rdma.la lib/openmpi/mca_paffinity_hwloc.la lib/openmpi/mca_plm_rsh.la -lib/openmpi/mca_plm_rshd.la +lib/openmpi/mca_plm_slurm.la lib/openmpi/mca_pml_bfo.la lib/openmpi/mca_pml_cm.la lib/openmpi/mca_pml_csum.la @@ -126,6 +127,8 @@ lib/openmpi/mca_pml_ob1.la lib/openmpi/mca_pml_v.la lib/openmpi/mca_pubsub_orte.la lib/openmpi/mca_ras_cm.la +lib/openmpi/mca_ras_gridengine.la +lib/openmpi/mca_ras_slurm.la lib/openmpi/mca_rcache_vma.la lib/openmpi/mca_rmaps_load_balance.la lib/openmpi/mca_rmaps_rank_file.la @@ -142,6 +145,8 @@ lib/openmpi/mca_routed_direct.la lib/openmpi/mca_routed_linear.la lib/openmpi/mca_routed_radix.la lib/openmpi/mca_routed_slave.la +lib/openmpi/mca_shmem_mmap.la +lib/openmpi/mca_shmem_sysv.la lib/openmpi/mca_topo_unity.la lib/openmpi/mca_vprotocol_pessimist.la lib/pkgconfig/ompi-c.pc @@ -524,7 +529,10 @@ share/openmpi/help-oob-tcp.txt share/openmpi/help-opal-carto-file.txt share/openmpi/help-opal-crs-base.txt share/openmpi/help-opal-crs-none.txt +share/openmpi/help-opal-maffinity-hwloc.txt share/openmpi/help-opal-runtime.txt +share/openmpi/help-opal-shmem-mmap.txt +share/openmpi/help-opal-shmem-sysv.txt share/openmpi/help-opal-util.txt share/openmpi/help-opal-wrapper.txt share/openmpi/help-orte-clean.txt @@ -548,8 +556,10 @@ share/openmpi/help-orted.txt share/openmpi/help-orterun.txt share/openmpi/help-plm-base.txt share/openmpi/help-plm-rsh.txt -share/openmpi/help-plm-rshd.txt +share/openmpi/help-plm-slurm.txt share/openmpi/help-ras-base.txt +share/openmpi/help-ras-gridengine.txt +share/openmpi/help-ras-slurm.txt share/openmpi/help-regex.txt share/openmpi/help-rmaps_rank_file.txt share/openmpi/help-rmcast-base.txt diff --git a/parallel/openmpi/PLIST.vt b/parallel/openmpi/PLIST.vt index c31d83a21b1..1fe11e856b3 100644 --- a/parallel/openmpi/PLIST.vt +++ b/parallel/openmpi/PLIST.vt @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST.vt,v 1.4 2012/05/21 16:08:51 marino Exp $ +@comment $NetBSD: PLIST.vt,v 1.5 2012/05/28 18:38:18 asau Exp $ bin/mpiCC-vt bin/mpic++-vt bin/mpicc-vt @@ -12,7 +12,9 @@ bin/otfdecompress bin/otfdump bin/otfinfo bin/otfmerge +bin/otfmerge-mpi bin/otfprofile +bin/otfprofile-mpi bin/otfshrink bin/vtCC bin/vtc++ @@ -21,17 +23,27 @@ bin/vtcxx bin/vtf77 bin/vtf90 bin/vtfilter +bin/vtfilter-mpi +bin/vtfiltergen +bin/vtfiltergen-mpi +bin/vtrun bin/vtunify bin/vtunify-mpi bin/vtwrapper etc/vt-java-default-filter.spec +etc/vt-setup-config.dtd +etc/vt-setup-config.xml +include/vampirtrace/OTFAUX_MsgMatching.h +include/vampirtrace/OTFAUX_Thumbnail.h include/vampirtrace/OTF_CopyHandler.h +include/vampirtrace/OTF_CopyHandler_stream.h include/vampirtrace/OTF_Definitions.h include/vampirtrace/OTF_Errno.h include/vampirtrace/OTF_File.h include/vampirtrace/OTF_FileManager.h include/vampirtrace/OTF_Filenames.h include/vampirtrace/OTF_HandlerArray.h +include/vampirtrace/OTF_KeyValue.h include/vampirtrace/OTF_MasterControl.h include/vampirtrace/OTF_RBuffer.h include/vampirtrace/OTF_RStream.h @@ -43,6 +55,8 @@ include/vampirtrace/OTF_Writer.h include/vampirtrace/OTF_inttypes.h include/vampirtrace/OTF_inttypes_unix.h include/vampirtrace/otf.h +include/vampirtrace/otfaux.h +include/vampirtrace/vt_inttypes.h include/vampirtrace/vt_user.h include/vampirtrace/vt_user.inc include/vampirtrace/vt_user_comment.h @@ -53,12 +67,16 @@ include/vampirtrace/vt_user_count.h include/vampirtrace/vt_user_count.inc include/vampirtrace/vt_user_marker.h include/vampirtrace/vt_user_marker.inc +include/vampirtrace/vt_user_message.h +include/vampirtrace/vt_user_message.inc include/vampirtrace/vt_user_region.h include/vampirtrace/vt_user_region.inc include/vampirtrace/vt_wrap_pthread.h ${PLIST.vtlwraph}include/vampirtrace/vt_libwrap.h lib/libotf.la +lib/libotfaux.la lib/libvt-hyb.la +lib/libvt-mpi-unify.la lib/libvt-mpi.la lib/libvt-mt.la lib/libvt.la @@ -77,6 +95,8 @@ share/vampirtrace/doc/UserManual.html share/vampirtrace/doc/UserManual.pdf share/vampirtrace/doc/otf/ChangeLog share/vampirtrace/doc/otf/LICENSE +share/vampirtrace/doc/otf/otfprofile.pdf +share/vampirtrace/doc/otf/otfprofile_clustering.pdf share/vampirtrace/doc/otf/otftools.pdf share/vampirtrace/doc/otf/specification.pdf share/vampirtrace/libtool diff --git a/parallel/openmpi/distinfo b/parallel/openmpi/distinfo index bfde8b682fb..acd3a6460ee 100644 --- a/parallel/openmpi/distinfo +++ b/parallel/openmpi/distinfo @@ -1,9 +1,10 @@ -$NetBSD: distinfo,v 1.8 2011/08/27 19:32:55 asau Exp $ +$NetBSD: distinfo,v 1.9 2012/05/28 18:38:18 asau Exp $ -SHA1 (openmpi-1.5.4.tar.bz2) = 81f7736a83b2134ba20c2e5c380b4d267cfd9d9c -RMD160 (openmpi-1.5.4.tar.bz2) = 6e172309b102cf6382b4b516d07e0133466485b3 -Size (openmpi-1.5.4.tar.bz2) = 7629620 bytes -SHA1 (patch-aa) = 90f74e14eb686cd68bf29ea28cfb9818984f6408 +SHA1 (openmpi-1.5.5.tar.bz2) = 206e555f6d376443f2342f721d944e67dd1a04ef +RMD160 (openmpi-1.5.5.tar.bz2) = 6e7648ec0fa553c16b40f886b397d11863039eb2 +Size (openmpi-1.5.5.tar.bz2) = 10055601 bytes +SHA1 (patch-aa) = 6fa20775c6e2abae7c9a2ae858dbb941652beab8 SHA1 (patch-ai) = 650906ec3701cc7bac6b7f916c87506ccb885341 SHA1 (patch-aj) = dc85e6c9eb6db0eb40bb896a11c223afeda63c2f SHA1 (patch-ak) = f6ea4220d51dd0c84ac2067d695c265f00904a0f +SHA1 (patch-ompi_contrib_vt_vt_extlib_otf_tools_otfprofile_clustering.cpp) = b2baee86e9787fec7d16073cbb63ece4e83c2333 diff --git a/parallel/openmpi/patches/patch-aa b/parallel/openmpi/patches/patch-aa index 3852da2142c..b5f4f6ee98e 100644 --- a/parallel/openmpi/patches/patch-aa +++ b/parallel/openmpi/patches/patch-aa @@ -1,18 +1,18 @@ -$NetBSD: patch-aa,v 1.2 2010/12/16 21:00:54 asau Exp $ +$NetBSD: patch-aa,v 1.3 2012/05/28 18:38:18 asau Exp $ Missing RPATH support. ---- opal/tools/wrappers/opal_wrapper.c.orig 2009-11-04 17:57:36.000000000 +0300 -+++ opal/tools/wrappers/opal_wrapper.c 2010-01-12 20:48:26.000000000 +0300 -@@ -58,6 +58,7 @@ - #if !defined(__WINDOWS__) +--- opal/tools/wrappers/opal_wrapper.c.orig 2011-12-14 05:43:59.000000000 +0400 ++++ opal/tools/wrappers/opal_wrapper.c 2012-02-16 18:10:03.000000000 +0400 +@@ -61,6 +61,7 @@ + #else #define OPAL_INCLUDE_FLAG "-I" #define OPAL_LIBDIR_FLAG "-L" +#define OPAL_RPATH_FLAG "-R" - #else - #define OPAL_INCLUDE_FLAG "/I" - #define OPAL_LIBDIR_FLAG "/LIBPATH:" -@@ -357,6 +358,8 @@ + #endif /* !defined(__WINDOWS__) && defined(_MSC_VER) */ + + struct options_data_t { +@@ -363,6 +364,8 @@ #else asprintf(&line, OPAL_LIBDIR_FLAG"%s", options_data[parse_options_idx].path_libdir); |