Import of phylip-3.573c, a Phylogeny Inference Package, as submitted by

Marc Baudoin, thanks!

5 files changed, 117 insertions, 0 deletions

diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
new file mode 100644
index 00000000000..d76285a5ae2
--- /dev/null
+++ b/biology/phylip/Makefile
@@ -0,0 +1,35 @@
+# $NetBSD: Makefile,v 1.1.1.1 1999/07/28 19:58:56 rh Exp $
+
+DISTNAME=	phylip
+PKGNAME=	phylip-3.573c
+NO_WRKSUBDIR=	yes
+CATEGORIES=	biology
+MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/phylip/ \
+		ftp://ftp.bioss.sari.ac.uk/pub/phylogeny/phylip/
+EXTRACT_SUFX=	.tar.Z
+
+MAINTAINER=	babafou@babafou.eu.org
+HOMEPAGE=	http://evolution.genetics.washington.edu/phylip.html
+
+NO_CDROM=	"No commercial distribution without a royalty agreement with the author"
+
+do-install:
+	${INSTALL_DATA_DIR} ${PREFIX}/share/doc/phylip
+.for DOC in main.doc	\
+		contchar.doc discrete.doc distance.doc draw.doc sequence.doc
+	${INSTALL_DATA} ${WRKSRC}/${DOC} ${PREFIX}/share/doc/phylip
+.endfor
+.for PROGRAM in clique consense contml contrast dnacomp dnadist		\
+		dnainvar dnaml dnamlk dnamove dnapars dnapenny		\
+		dolmove dollop dolpenny drawgram drawtree factor	\
+		fitch gendist kitsch mix move neighbor penny		\
+		protdist protpars restml retree seqboot
+	${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin
+	${INSTALL_DATA} ${WRKSRC}/${PROGRAM}.doc ${PREFIX}/share/doc/phylip
+.endfor
+	${INSTALL_DATA_DIR} ${PREFIX}/share/misc/phylip
+.for FONT in font1 font2 font3 font4 font5 font6
+	${INSTALL_DATA} ${WRKSRC}/${FONT} ${PREFIX}/share/misc/phylip
+.endfor
+
+.include "../../mk/bsd.pkg.mk"
diff --git a/biology/phylip/files/md5 b/biology/phylip/files/md5
new file mode 100644
index 00000000000..0e6f759a0ea
--- /dev/null
+++ b/biology/phylip/files/md5
@@ -0,0 +1,3 @@
+$NetBSD: md5,v 1.1.1.1 1999/07/28 19:58:56 rh Exp $
+
+MD5 (phylip.tar.Z) = d437d19d82fd84c723a73b6420aae4fc
diff --git a/biology/phylip/pkg/COMMENT b/biology/phylip/pkg/COMMENT
new file mode 100644
index 00000000000..99fb093d9df
--- /dev/null
+++ b/biology/phylip/pkg/COMMENT
@@ -0,0 +1 @@
+Phylogeny Inference Package
diff --git a/biology/phylip/pkg/DESCR b/biology/phylip/pkg/DESCR
new file mode 100644
index 00000000000..4207db17ffd
--- /dev/null
+++ b/biology/phylip/pkg/DESCR
@@ -0,0 +1,3 @@
+     This is a FREE package of programs for inferring phylogenies and  carrying
+out certain related tasks.  At present it contains 30 programs, which carry out
+different algorithms on different kinds of data.
diff --git a/biology/phylip/pkg/PLIST b/biology/phylip/pkg/PLIST
new file mode 100644
index 00000000000..20811036e42
--- /dev/null
+++ b/biology/phylip/pkg/PLIST
@@ -0,0 +1,75 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 1999/07/28 19:58:57 rh Exp $
+share/doc/phylip/main.doc
+share/doc/phylip/contchar.doc
+share/doc/phylip/discrete.doc
+share/doc/phylip/distance.doc
+share/doc/phylip/draw.doc
+share/doc/phylip/sequence.doc
+bin/clique
+share/doc/phylip/clique.doc
+bin/consense
+share/doc/phylip/consense.doc
+bin/contml
+share/doc/phylip/contml.doc
+bin/contrast
+share/doc/phylip/contrast.doc
+bin/dnacomp
+share/doc/phylip/dnacomp.doc
+bin/dnadist
+share/doc/phylip/dnadist.doc
+bin/dnainvar
+share/doc/phylip/dnainvar.doc
+bin/dnaml
+share/doc/phylip/dnaml.doc
+bin/dnamlk
+share/doc/phylip/dnamlk.doc
+bin/dnamove
+share/doc/phylip/dnamove.doc
+bin/dnapars
+share/doc/phylip/dnapars.doc
+bin/dnapenny
+share/doc/phylip/dnapenny.doc
+bin/dolmove
+share/doc/phylip/dolmove.doc
+bin/dollop
+share/doc/phylip/dollop.doc
+bin/dolpenny
+share/doc/phylip/dolpenny.doc
+bin/drawgram
+share/doc/phylip/drawgram.doc
+bin/drawtree
+share/doc/phylip/drawtree.doc
+bin/factor
+share/doc/phylip/factor.doc
+bin/fitch
+share/doc/phylip/fitch.doc
+bin/gendist
+share/doc/phylip/gendist.doc
+bin/kitsch
+share/doc/phylip/kitsch.doc
+bin/mix
+share/doc/phylip/mix.doc
+bin/move
+share/doc/phylip/move.doc
+bin/neighbor
+share/doc/phylip/neighbor.doc
+bin/penny
+share/doc/phylip/penny.doc
+bin/protdist
+share/doc/phylip/protdist.doc
+bin/protpars
+share/doc/phylip/protpars.doc
+bin/restml
+share/doc/phylip/restml.doc
+bin/retree
+share/doc/phylip/retree.doc
+bin/seqboot
+share/doc/phylip/seqboot.doc
+@dirrm share/doc/phylip
+share/misc/phylip/font1
+share/misc/phylip/font2
+share/misc/phylip/font3
+share/misc/phylip/font4
+share/misc/phylip/font5
+share/misc/phylip/font6
+@dirrm share/misc/phylip