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author | rh <rh> | 1999-07-28 19:58:56 +0000 |
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committer | rh <rh> | 1999-07-28 19:58:56 +0000 |
commit | b852dee8c1b403bd326c6f50715d4f3b1afb7ea9 (patch) | |
tree | 8d242db5fd32fae5f86aff6b6ff0c3fe1c014485 | |
parent | cfb1166a472af3b301b6e30b1ae59faf0915d9a3 (diff) | |
download | pkgsrc-b852dee8c1b403bd326c6f50715d4f3b1afb7ea9.tar.gz |
Import of phylip-3.573c, a Phylogeny Inference Package, as submitted by
Marc Baudoin, thanks!
-rw-r--r-- | biology/phylip/Makefile | 35 | ||||
-rw-r--r-- | biology/phylip/files/md5 | 3 | ||||
-rw-r--r-- | biology/phylip/pkg/COMMENT | 1 | ||||
-rw-r--r-- | biology/phylip/pkg/DESCR | 3 | ||||
-rw-r--r-- | biology/phylip/pkg/PLIST | 75 |
5 files changed, 117 insertions, 0 deletions
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile new file mode 100644 index 00000000000..d76285a5ae2 --- /dev/null +++ b/biology/phylip/Makefile @@ -0,0 +1,35 @@ +# $NetBSD: Makefile,v 1.1.1.1 1999/07/28 19:58:56 rh Exp $ + +DISTNAME= phylip +PKGNAME= phylip-3.573c +NO_WRKSUBDIR= yes +CATEGORIES= biology +MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/phylip/ \ + ftp://ftp.bioss.sari.ac.uk/pub/phylogeny/phylip/ +EXTRACT_SUFX= .tar.Z + +MAINTAINER= babafou@babafou.eu.org +HOMEPAGE= http://evolution.genetics.washington.edu/phylip.html + +NO_CDROM= "No commercial distribution without a royalty agreement with the author" + +do-install: + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/phylip +.for DOC in main.doc \ + contchar.doc discrete.doc distance.doc draw.doc sequence.doc + ${INSTALL_DATA} ${WRKSRC}/${DOC} ${PREFIX}/share/doc/phylip +.endfor +.for PROGRAM in clique consense contml contrast dnacomp dnadist \ + dnainvar dnaml dnamlk dnamove dnapars dnapenny \ + dolmove dollop dolpenny drawgram drawtree factor \ + fitch gendist kitsch mix move neighbor penny \ + protdist protpars restml retree seqboot + ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${PREFIX}/bin + ${INSTALL_DATA} ${WRKSRC}/${PROGRAM}.doc ${PREFIX}/share/doc/phylip +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/misc/phylip +.for FONT in font1 font2 font3 font4 font5 font6 + ${INSTALL_DATA} ${WRKSRC}/${FONT} ${PREFIX}/share/misc/phylip +.endfor + +.include "../../mk/bsd.pkg.mk" diff --git a/biology/phylip/files/md5 b/biology/phylip/files/md5 new file mode 100644 index 00000000000..0e6f759a0ea --- /dev/null +++ b/biology/phylip/files/md5 @@ -0,0 +1,3 @@ +$NetBSD: md5,v 1.1.1.1 1999/07/28 19:58:56 rh Exp $ + +MD5 (phylip.tar.Z) = d437d19d82fd84c723a73b6420aae4fc diff --git a/biology/phylip/pkg/COMMENT b/biology/phylip/pkg/COMMENT new file mode 100644 index 00000000000..99fb093d9df --- /dev/null +++ b/biology/phylip/pkg/COMMENT @@ -0,0 +1 @@ +Phylogeny Inference Package diff --git a/biology/phylip/pkg/DESCR b/biology/phylip/pkg/DESCR new file mode 100644 index 00000000000..4207db17ffd --- /dev/null +++ b/biology/phylip/pkg/DESCR @@ -0,0 +1,3 @@ + This is a FREE package of programs for inferring phylogenies and carrying +out certain related tasks. At present it contains 30 programs, which carry out +different algorithms on different kinds of data. diff --git a/biology/phylip/pkg/PLIST b/biology/phylip/pkg/PLIST new file mode 100644 index 00000000000..20811036e42 --- /dev/null +++ b/biology/phylip/pkg/PLIST @@ -0,0 +1,75 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 1999/07/28 19:58:57 rh Exp $ +share/doc/phylip/main.doc +share/doc/phylip/contchar.doc +share/doc/phylip/discrete.doc +share/doc/phylip/distance.doc +share/doc/phylip/draw.doc +share/doc/phylip/sequence.doc +bin/clique +share/doc/phylip/clique.doc +bin/consense +share/doc/phylip/consense.doc +bin/contml +share/doc/phylip/contml.doc +bin/contrast +share/doc/phylip/contrast.doc +bin/dnacomp +share/doc/phylip/dnacomp.doc +bin/dnadist +share/doc/phylip/dnadist.doc +bin/dnainvar +share/doc/phylip/dnainvar.doc +bin/dnaml +share/doc/phylip/dnaml.doc +bin/dnamlk +share/doc/phylip/dnamlk.doc +bin/dnamove +share/doc/phylip/dnamove.doc +bin/dnapars +share/doc/phylip/dnapars.doc +bin/dnapenny +share/doc/phylip/dnapenny.doc +bin/dolmove +share/doc/phylip/dolmove.doc +bin/dollop +share/doc/phylip/dollop.doc +bin/dolpenny +share/doc/phylip/dolpenny.doc +bin/drawgram +share/doc/phylip/drawgram.doc +bin/drawtree +share/doc/phylip/drawtree.doc +bin/factor +share/doc/phylip/factor.doc +bin/fitch +share/doc/phylip/fitch.doc +bin/gendist +share/doc/phylip/gendist.doc +bin/kitsch +share/doc/phylip/kitsch.doc +bin/mix +share/doc/phylip/mix.doc +bin/move +share/doc/phylip/move.doc +bin/neighbor +share/doc/phylip/neighbor.doc +bin/penny +share/doc/phylip/penny.doc +bin/protdist +share/doc/phylip/protdist.doc +bin/protpars +share/doc/phylip/protpars.doc +bin/restml +share/doc/phylip/restml.doc +bin/retree +share/doc/phylip/retree.doc +bin/seqboot +share/doc/phylip/seqboot.doc +@dirrm share/doc/phylip +share/misc/phylip/font1 +share/misc/phylip/font2 +share/misc/phylip/font3 +share/misc/phylip/font4 +share/misc/phylip/font5 +share/misc/phylip/font6 +@dirrm share/misc/phylip |