diff options
| author | he <he@pkgsrc.org> | 2017-12-27 23:44:01 +0000 |
|---|---|---|
| committer | he <he@pkgsrc.org> | 2017-12-27 23:44:01 +0000 |
| commit | 8bb201f4dd08de8d7a6fd690b9c0ef5686a7c0f9 (patch) | |
| tree | 76c43d4906d1edd3cd4620aa4e08099b6b8ff4f4 /biology/bwa | |
| parent | d89091d505574916e3ff32915df7d684bf90bd69 (diff) | |
| download | pkgsrc-8bb201f4dd08de8d7a6fd690b9c0ef5686a7c0f9.tar.gz | |
Re-add patch to bring timeval definition and select prototype into scope.
Bump PKGREVISION.
Diffstat (limited to 'biology/bwa')
| -rw-r--r-- | biology/bwa/Makefile | 3 | ||||
| -rw-r--r-- | biology/bwa/distinfo | 3 | ||||
| -rw-r--r-- | biology/bwa/patches/patch-kopen.c | 15 |
3 files changed, 19 insertions, 2 deletions
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile index 05a6870f52b..b382e4a148d 100644 --- a/biology/bwa/Makefile +++ b/biology/bwa/Makefile @@ -1,7 +1,8 @@ -# $NetBSD: Makefile,v 1.5 2017/12/17 14:30:36 bacon Exp $ +# $NetBSD: Makefile,v 1.6 2017/12/27 23:44:01 he Exp $ DISTNAME= bwa-0.7.17 CATEGORIES= biology +PKGREVISION= 1 GITHUB_TAG= v${PKGVERSION_NOREV} MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/} diff --git a/biology/bwa/distinfo b/biology/bwa/distinfo index abf8b8cd593..be23d42ed60 100644 --- a/biology/bwa/distinfo +++ b/biology/bwa/distinfo @@ -1,7 +1,8 @@ -$NetBSD: distinfo,v 1.5 2017/12/17 14:30:36 bacon Exp $ +$NetBSD: distinfo,v 1.6 2017/12/27 23:44:01 he Exp $ SHA1 (bwa-0.7.17.tar.gz) = 77f9aac723110227ea51cb42011336d291d03723 RMD160 (bwa-0.7.17.tar.gz) = d26a266387dee4fc9fcf6eef4f7ffcc076495c22 SHA512 (bwa-0.7.17.tar.gz) = 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48 Size (bwa-0.7.17.tar.gz) = 232593 bytes SHA1 (patch-Makefile) = 72ac08d92540a88da08bf4d988ca3f6132327a6a +SHA1 (patch-kopen.c) = ecc92efa3ebe4da484aa6760e23de9437b000644 diff --git a/biology/bwa/patches/patch-kopen.c b/biology/bwa/patches/patch-kopen.c new file mode 100644 index 00000000000..bf3c18bf718 --- /dev/null +++ b/biology/bwa/patches/patch-kopen.c @@ -0,0 +1,15 @@ +$NetBSD: patch-kopen.c,v 1.3 2017/12/27 23:44:01 he Exp $ + +Add includes for getting timevals and select prototype into scope. + +--- kopen.c.orig 2017-10-23 17:10:17.000000000 +0000 ++++ kopen.c +@@ -12,6 +12,8 @@ + #include <netdb.h> + #include <arpa/inet.h> + #include <sys/socket.h> ++#include <sys/time.h> ++#include <sys/select.h> + #endif + + #ifdef USE_MALLOC_WRAPPERS |