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| author | jschauma <jschauma@pkgsrc.org> | 2003-09-30 01:57:08 +0000 |
|---|---|---|
| committer | jschauma <jschauma@pkgsrc.org> | 2003-09-30 01:57:08 +0000 |
| commit | f4364c13ef2fe0062e235f1e1f61c6e676e9b195 (patch) | |
| tree | 2825f07469a0e3ed7d2008b2167b6c1c00269bb9 /biology/genesplicer/patches | |
| parent | 36dab1e624b372601d0d8990cc3556a936b97757 (diff) | |
| download | pkgsrc-f4364c13ef2fe0062e235f1e1f61c6e676e9b195.tar.gz | |
Initial import of genesplicer, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
GeneSplicer is a fast, flexible system for detecting splice sites in the
genomic DNA of various eukaryotes. The system has been trained and tested
successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human,
Drosophila, and rice.
Diffstat (limited to 'biology/genesplicer/patches')
| -rw-r--r-- | biology/genesplicer/patches/patch-aa | 21 |
1 files changed, 21 insertions, 0 deletions
diff --git a/biology/genesplicer/patches/patch-aa b/biology/genesplicer/patches/patch-aa new file mode 100644 index 00000000000..69eaecc68c7 --- /dev/null +++ b/biology/genesplicer/patches/patch-aa @@ -0,0 +1,21 @@ +$NetBSD: patch-aa,v 1.1.1.1 2003/09/30 01:57:09 jschauma Exp $ + +--- makefile.orig 2003-09-29 21:39:36.000000000 -0400 ++++ makefile 2003-09-29 21:40:57.000000000 -0400 +@@ -1,12 +1,12 @@ +-CC=g++ ++#CC=g++ + + all: genesplicer + + genesplicer: genesplicer.o sites.o +- $(CC) -o genesplicer genesplicer.o sites.o -lm ++ $(CXX) ${CXXFLAGS} -o genesplicer genesplicer.o sites.o ${LDFLAGS} -lm + + genesplicer.o: genesplicer.cpp +- $(CC) -c genesplicer.cpp ++ $(CXX) ${CXXFLAGS} -c genesplicer.cpp + + sites.o: sites.c +- $(CC) -c sites.c ++ $(CXX) ${CXXFLAGS} -c sites.c |