diff options
| author | minskim <minskim@pkgsrc.org> | 2004-12-01 04:01:09 +0000 |
|---|---|---|
| committer | minskim <minskim@pkgsrc.org> | 2004-12-01 04:01:09 +0000 |
| commit | 15e9128d894332d65aa6cd713922ab7f2a34fd09 (patch) | |
| tree | fbdf402073064d4caa45d5f747b25f389c9b3745 /biology/hmmer/Makefile | |
| parent | cff4149cea431ed6600f7f4eb7682d45d6260c46 (diff) | |
| download | pkgsrc-15e9128d894332d65aa6cd713922ab7f2a34fd09.tar.gz | |
Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.
Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
and could explode to very large allocations when searching
with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
"bug" has no visible effects, except when compiling on
different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
specifying different output alignment formats than the default
Stockholm.
Diffstat (limited to 'biology/hmmer/Makefile')
| -rw-r--r-- | biology/hmmer/Makefile | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index 0205a9f3e31..04536081268 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -1,15 +1,16 @@ -# $NetBSD: Makefile,v 1.5 2004/08/16 02:47:49 ben Exp $ +# $NetBSD: Makefile,v 1.6 2004/12/01 04:01:09 minskim Exp $ # -DISTNAME= hmmer-2.3.1 +DISTNAME= hmmer-2.3.2 CATEGORIES= biology -MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.1/ +MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.2/ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://hmmer.wustl.edu/ COMMENT= Implementation of profile HMM software for protein sequence analysis -WRKSRC= ${WRKDIR}/hmmer-2.3.1 +PKG_INSTALLATION_TYPES= overwrite pkgviews + USE_BUILDLINK3= yes GNU_CONFIGURE= yes |