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| author | jschauma <jschauma@pkgsrc.org> | 2003-10-04 19:13:28 +0000 |
|---|---|---|
| committer | jschauma <jschauma@pkgsrc.org> | 2003-10-04 19:13:28 +0000 |
| commit | 558f18b319df9294e35548e51187b050ccbaae35 (patch) | |
| tree | 8cea07310eca5f1e40385a76e7bf7494cf219e3b /biology/xylem/patches/patch-ab | |
| parent | 20f673d41ef7a3c89f0ab833fabc204d2de8879c (diff) | |
| download | pkgsrc-558f18b319df9294e35548e51187b050ccbaae35.tar.gz | |
Initial import of xylem, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
XYLEM is a package of tools designed to exploit the Unix environment to enable
the user to identify, extract and manipulate data from major databases such as
GenBank, EMBL and PIR.
Diffstat (limited to 'biology/xylem/patches/patch-ab')
| -rw-r--r-- | biology/xylem/patches/patch-ab | 76 |
1 files changed, 76 insertions, 0 deletions
diff --git a/biology/xylem/patches/patch-ab b/biology/xylem/patches/patch-ab new file mode 100644 index 00000000000..274bffe0159 --- /dev/null +++ b/biology/xylem/patches/patch-ab @@ -0,0 +1,76 @@ +$NetBSD: patch-ab,v 1.1.1.1 2003/10/04 19:13:33 jschauma Exp $ + +--- Makefile.orig 2000-08-17 12:17:18.000000000 -0400 ++++ Makefile 2003-09-28 17:05:26.000000000 -0400 +@@ -6,9 +6,9 @@ + LDLIB = . + LIBOBJS = p2clib.o + #CC= gcc +-CC= cc +-CFLAGS= -O -L$(LDLIB) -lp2c -lm -I$(INCLIB) +-LFLAGS= -c ++#CC= cc ++MYCFLAGS= -O -L$(LDLIB) -lp2c -lm -I$(INCLIB) ++LFLAGS+= -c + + PROGS= dbstat getloc getob identify prot2nuc reform ribosome splitdb shuffle flat2phyl phyl2flat + +@@ -22,45 +22,45 @@ + + # Making the p2c runtime library + libp2c.a: $(LIBOBJS) +- ar r libp2c.a $(LIBOBJS); ranlib libp2c.a ++ ${AR} r libp2c.a $(LIBOBJS); ranlib libp2c.a + + p2clib.o: p2clib.c +- $(CC) $(LFLAGS) p2clib.c ++ $(CC) $(LFLAGS) ${CFLAGS} p2clib.c + + #libp2c.a: libp2c.a + # ranlib libp2c.a + + # Making the programs + dbstat : +- $(CC) dbstat.c $(CFLAGS) -o dbstat ++ $(CC) dbstat.c $(MYCFLAGS) ${CFLAGS} -o dbstat + + flat2phyl : +- $(CC) flat2phyl.c $(CFLAGS) -o flat2phyl ++ $(CC) flat2phyl.c $(MYCFLAGS) ${CFLAGS} -o flat2phyl + + phyl2flat : +- $(CC) phyl2flat.c $(CFLAGS) -o phyl2flat ++ $(CC) phyl2flat.c $(MYCFLAGS) ${CFLAGS} -o phyl2flat + + getloc : +- $(CC) getloc.c $(CFLAGS) -o getloc ++ $(CC) getloc.c $(MYCFLAGS) ${CFLAGS} -o getloc + + getob : +- $(CC) getob.c $(CFLAGS) -o getob ++ $(CC) getob.c $(MYCFLAGS) ${CFLAGS} -o getob + + identify : +- $(CC) identify.c $(CFLAGS) -o identify ++ $(CC) identify.c $(MYCFLAGS) ${CFLAGS} -o identify + + prot2nuc : +- $(CC) prot2nuc.c $(CFLAGS) -o prot2nuc ++ $(CC) prot2nuc.c $(MYCFLAGS) ${CFLAGS} -o prot2nuc + + reform : +- $(CC) reform.c $(CFLAGS) -o reform ++ $(CC) reform.c $(MYCFLAGS) ${CFLAGS} -o reform + + ribosome : +- $(CC) ribosome.c $(CFLAGS) -o ribosome ++ $(CC) ribosome.c $(MYCFLAGS) ${CFLAGS} -o ribosome + + shuffle : +- $(CC) shuffle.c $(CFLAGS) -o shuffle ++ $(CC) shuffle.c $(MYCFLAGS) ${CFLAGS} -o shuffle + + splitdb : +- $(CC) splitdb.c $(CFLAGS) -o splitdb ++ $(CC) splitdb.c $(MYCFLAGS) ${CFLAGS} -o splitdb + |