Update to pymol 1.5.0.1:

- bug fixes
- improvements to performance and render quality

3 files changed, 38 insertions, 9 deletions

diff --git a/biology/py-mol/Makefile b/biology/py-mol/Makefile
index fd115e18580..9c52c09e687 100644
--- a/biology/py-mol/Makefile
+++ b/biology/py-mol/Makefile
@@ -1,9 +1,8 @@
-# $NetBSD: Makefile,v 1.15 2013/02/16 11:20:26 wiz Exp $
+# $NetBSD: Makefile,v 1.16 2013/04/14 19:48:56 joerg Exp $
 
-DISTNAME=	pymol-v1.4.1
+DISTNAME=	pymol-v1.5.0.1
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME:S/pymol-v/mol-/}
-EGG_NAME=	pymol-1.4.0
-PKGREVISION=	4
+EGG_NAME=	pymol-1.5.0.1
 CATEGORIES=	biology
 MASTER_SITES=	${MASTER_SITE_SOURCEFORGE:=pymol/}
 EXTRACT_SUFX=	.tar.bz2
@@ -32,6 +31,9 @@ CHECK_PORTABILITY_SKIP+=	setup/*
 
 INSTALLATION_DIRS=	bin
 
+# Gross hack
+PYSETUPBUILDTARGET=	install
+
 post-install:
 	cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} PYTHONPATH=${DESTDIR}${PREFIX}/${PYSITELIB} ${PYTHONBIN} setup2.py install
 	${INSTALL_SCRIPT} ${WRKSRC}/pymol ${DESTDIR}${PREFIX}/bin/pymol
diff --git a/biology/py-mol/PLIST b/biology/py-mol/PLIST
index e620c9ed353..93cf96ef46c 100644
--- a/biology/py-mol/PLIST
+++ b/biology/py-mol/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2012/04/08 20:21:43 wiz Exp $
+@comment $NetBSD: PLIST,v 1.5 2013/04/14 19:48:56 joerg Exp $
 bin/pymol
 ${PYSITELIB}/chempy/__init__.py
 ${PYSITELIB}/chempy/__init__.pyc
@@ -172,6 +172,9 @@ ${PYSITELIB}/pmg_tk/Demo.pyo
 ${PYSITELIB}/pmg_tk/PMGApp.py
 ${PYSITELIB}/pmg_tk/PMGApp.pyc
 ${PYSITELIB}/pmg_tk/PMGApp.pyo
+${PYSITELIB}/pmg_tk/PyMOLMapLoad.py
+${PYSITELIB}/pmg_tk/PyMOLMapLoad.pyc
+${PYSITELIB}/pmg_tk/PyMOLMapLoad.pyo
 ${PYSITELIB}/pmg_tk/SetEditor.py
 ${PYSITELIB}/pmg_tk/SetEditor.pyc
 ${PYSITELIB}/pmg_tk/SetEditor.pyo
@@ -255,6 +258,9 @@ ${PYSITELIB}/pymol/computing.pyo
 ${PYSITELIB}/pymol/constants.py
 ${PYSITELIB}/pymol/constants.pyc
 ${PYSITELIB}/pymol/constants.pyo
+${PYSITELIB}/pymol/constants_palette.py
+${PYSITELIB}/pymol/constants_palette.pyc
+${PYSITELIB}/pymol/constants_palette.pyo
 ${PYSITELIB}/pymol/contrib/__init__.py
 ${PYSITELIB}/pymol/contrib/__init__.pyc
 ${PYSITELIB}/pymol/contrib/__init__.pyo
@@ -526,13 +532,32 @@ ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.gif
 ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps/builder/cyc7.xbm
 ${PYSITELIB}/pymol/pymol_path/data/pymol/cmyk.png
 ${PYSITELIB}/pymol/pymol_path/data/pymol/hsv.ppm
+${PYSITELIB}/pymol/pymol_path/data/pymol/incentive_splash.png
 ${PYSITELIB}/pymol/pymol_path/data/pymol/matrices/BLOSUM62
 ${PYSITELIB}/pymol/pymol_path/data/pymol/splash.old.png
+${PYSITELIB}/pymol/pymol_path/data/pymol/splash.png
+${PYSITELIB}/pymol/pymol_path/data/pymol/splash_edu.png
+${PYSITELIB}/pymol/pymol_path/data/shaders/cylinder.fs
+${PYSITELIB}/pymol/pymol_path/data/shaders/cylinder.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/cylinder_no_ff.fs
 ${PYSITELIB}/pymol/pymol_path/data/shaders/default.fs
 ${PYSITELIB}/pymol/pymol_path/data/shaders/default.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/default_es.fs
+${PYSITELIB}/pymol/pymol_path/data/shaders/default_es.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/default_es2.fs
+${PYSITELIB}/pymol/pymol_path/data/shaders/default_es2.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/shadertext.txt
+${PYSITELIB}/pymol/pymol_path/data/shaders/sphere.fs
+${PYSITELIB}/pymol/pymol_path/data/shaders/sphere.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/sphere_arb_fs.fs
+${PYSITELIB}/pymol/pymol_path/data/shaders/sphere_arb_vs.vs
+${PYSITELIB}/pymol/pymol_path/data/shaders/spheredirect.vs
 ${PYSITELIB}/pymol/pymol_path/data/shaders/volume.fs
 ${PYSITELIB}/pymol/pymol_path/data/shaders/volume.vs
 ${PYSITELIB}/pymol/pymol_path/data/tut/1hpv.pdb
+${PYSITELIB}/pymol/pymol_path/data/xray/atomformfactor2.dat
+${PYSITELIB}/pymol/pymol_path/data/xray/atomformfactor5.dat
+${PYSITELIB}/pymol/pymol_path/data/xray/spgbase.dat
 ${PYSITELIB}/pymol/pymol_path/examples/chempy/generate_amber.py
 ${PYSITELIB}/pymol/pymol_path/examples/chempy/generate_mmff.py
 ${PYSITELIB}/pymol/pymol_path/examples/cookbook/area_diff.pml
@@ -569,6 +594,7 @@ ${PYSITELIB}/pymol/pymol_path/examples/devel/chempy_model02.py
 ${PYSITELIB}/pymol/pymol_path/examples/devel/chempy_model03.py
 ${PYSITELIB}/pymol/pymol_path/examples/devel/click_ordered_list.py
 ${PYSITELIB}/pymol/pymol_path/examples/devel/count_molecules.py
+${PYSITELIB}/pymol/pymol_path/examples/devel/demo.sdf
 ${PYSITELIB}/pymol/pymol_path/examples/devel/extend_demo01.py
 ${PYSITELIB}/pymol/pymol_path/examples/devel/gl01.py
 ${PYSITELIB}/pymol/pymol_path/examples/devel/gl02.py
@@ -640,6 +666,7 @@ ${PYSITELIB}/pymol/pymol_path/test/dat/small02.pdb
 ${PYSITELIB}/pymol/pymol_path/test/dat/small03.mol2
 ${PYSITELIB}/pymol/pymol_path/test/dat/tiny.pdb
 ${PYSITELIB}/pymol/pymol_path/test/dat/water.pdb
+${PYSITELIB}/pymol/pymol_path/test/headerTest.py
 ${PYSITELIB}/pymol/pymol_path/test/inp/B01.py
 ${PYSITELIB}/pymol/pymol_path/test/inp/B02.py
 ${PYSITELIB}/pymol/pymol_path/test/inp/B03.py
diff --git a/biology/py-mol/distinfo b/biology/py-mol/distinfo
index 655225bc43a..c9bc5f0e6e7 100644
--- a/biology/py-mol/distinfo
+++ b/biology/py-mol/distinfo
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.2 2011/10/27 14:03:17 obache Exp $
+$NetBSD: distinfo,v 1.3 2013/04/14 19:48:56 joerg Exp $
 
-SHA1 (pymol-v1.4.1.tar.bz2) = 085c83af192c53160060fac14c438ca31c5b6ebf
-RMD160 (pymol-v1.4.1.tar.bz2) = 8a9e0c964ff76d6d8e7d837e579953ca8362c626
-Size (pymol-v1.4.1.tar.bz2) = 9105980 bytes
+SHA1 (pymol-v1.5.0.1.tar.bz2) = b59ff50437d34f21ca8ffd007a600de4df684073
+RMD160 (pymol-v1.5.0.1.tar.bz2) = 1e5fd51299f2bbe0249a9a07117c068af49ec095
+Size (pymol-v1.5.0.1.tar.bz2) = 9695855 bytes