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| author | ben <ben@pkgsrc.org> | 2004-08-19 16:47:01 +0000 |
|---|---|---|
| committer | ben <ben@pkgsrc.org> | 2004-08-19 16:47:01 +0000 |
| commit | 72d33fb01b7b56f21eb1361e898f5453a1455b50 (patch) | |
| tree | a953e1cecd069906034e673b9044d5b6049a9152 /biology | |
| parent | 108d99660c4e144963822848a01c3cb1e10d8a43 (diff) | |
| download | pkgsrc-72d33fb01b7b56f21eb1361e898f5453a1455b50.tar.gz | |
Update to glimmer-2.13, thanks to cngo@nmsu.edu.
CHANGELOG, 12 October 2003
add -X option to glimmer2, to allow orfs extending off ends of
sequence to be scored. Also fix bug affecting -p and -o options
when user chose zero overlap.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/glimmer/Makefile | 8 | ||||
| -rw-r--r-- | biology/glimmer/distinfo | 6 |
2 files changed, 7 insertions, 7 deletions
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile index 2a232c80cb7..68f8d46045c 100644 --- a/biology/glimmer/Makefile +++ b/biology/glimmer/Makefile @@ -1,8 +1,8 @@ -# $NetBSD: Makefile,v 1.4 2004/04/11 04:02:23 snj Exp $ +# $NetBSD: Makefile,v 1.5 2004/08/19 16:47:01 ben Exp $ # -DISTNAME= glimmer212 -PKGNAME= glimmer-2.12 +DISTNAME= glimmer213 +PKGNAME= glimmer-2.13 CATEGORIES= biology MASTER_SITES= ftp://ftp.tigr.org/pub/software/Glimmer/ @@ -11,7 +11,7 @@ HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/ COMMENT= System for finding genes in microbial DNA USE_BUILDLINK3= yes -WRKSRC= ${WRKDIR}/glimmer2.12 +WRKSRC= ${WRKDIR}/glimmer2.13 do-install: .for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \ diff --git a/biology/glimmer/distinfo b/biology/glimmer/distinfo index cbb0bc6924c..4bf205f9ac1 100644 --- a/biology/glimmer/distinfo +++ b/biology/glimmer/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.2 2003/10/07 18:20:15 jschauma Exp $ +$NetBSD: distinfo,v 1.3 2004/08/19 16:47:01 ben Exp $ -SHA1 (glimmer212.tar.gz) = f2291c3b9024c56b884d6dcab032cb36f54074f6 -Size (glimmer212.tar.gz) = 79431 bytes +SHA1 (glimmer213.tar.gz) = 772752c3c1543066e4c156e5ec0a2e4f0a24c688 +Size (glimmer213.tar.gz) = 79858 bytes SHA1 (patch-aa) = ceb45f887c32e91bd96b9d2c8dae39c9cc6fc658 SHA1 (patch-ab) = e2afaa9ff8e0d4a2647a77bbf7e1ba4012d53061 |