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| author | ben <ben@pkgsrc.org> | 2004-08-16 23:45:59 +0000 |
|---|---|---|
| committer | ben <ben@pkgsrc.org> | 2004-08-16 23:45:59 +0000 |
| commit | d019d671d6f6bc9d41ed68379cbb9d0740c243ef (patch) | |
| tree | f6584f842a0c972da1fd32a7d383af5d5a3e59e0 /biology | |
| parent | d7a674314f5819ea97190dbc1156dfd11dcdcf6d (diff) | |
| download | pkgsrc-d019d671d6f6bc9d41ed68379cbb9d0740c243ef.tar.gz | |
Update fastDNAml to version 1.2.2. Notable changes include:
* Now under GPL
* Convert to function definitions with parameter type lists
* General code clean-up
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/fastDNAml/Makefile | 29 | ||||
| -rw-r--r-- | biology/fastDNAml/distinfo | 6 |
2 files changed, 13 insertions, 22 deletions
diff --git a/biology/fastDNAml/Makefile b/biology/fastDNAml/Makefile index 4463ed95ab3..71f27d14e2a 100644 --- a/biology/fastDNAml/Makefile +++ b/biology/fastDNAml/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.5 2004/01/29 13:41:05 grant Exp $ +# $NetBSD: Makefile,v 1.6 2004/08/16 23:45:59 ben Exp $ -DISTNAME= fastDNAml_1.2.1 -PKGNAME= fastDNAml-1.2.1 +DISTNAME= fastDNAml_1.2.2 +PKGNAME= fastDNAml-1.2.2 CATEGORIES= biology MASTER_SITES= http://geta.life.uiuc.edu/~gary/programs/fastDNAml/ @@ -9,22 +9,12 @@ MAINTAINER= babafou@babafou.eu.org HOMEPAGE= http://geta.life.uiuc.edu/~gary/programs/fastDNAml.html COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML -RESTRICTED= "No commercial distribution without a royalty agreement with the author" -NO_SRC_ON_CDROM= ${RESTRICTED} -NO_BIN_ON_CDROM= ${RESTRICTED} +WRKSRC= ${WRKDIR}/${DISTNAME}/source -WRKSRC= ${WRKDIR}/${DISTNAME} -ALL_TARGET= fastDNAml - -MAKE_FLAGS+= CC="${CC}" -MAKE_FLAGS+= LDFLAGS=-lm - -do-build: - @cd ${WRKSRC}/source && \ - ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${ALL_TARGET} +MAKE_FLAGS+= CC=${CC} do-install: - ${INSTALL_PROGRAM} ${WRKSRC}/source/fastDNAml ${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin .for SCRIPT in ae2dnaml bootstrap categories categories_file \ checkpoint_summary clean_checkpoints clean_jumbles \ dnaml_progress fastDNAml_boot fastDNAml_loop \ @@ -33,10 +23,11 @@ do-install: quickadd restart scores transition treefile \ treefile2prolog trees2NEXUS trees2prolog userlengths \ usertree usertrees weights weights_categories - ${INSTALL_SCRIPT} ${WRKSRC}/scripts/${SCRIPT} ${PREFIX}/bin + ${INSTALL_SCRIPT} ${WRKDIR}/${DISTNAME}/scripts/${SCRIPT} ${PREFIX}/bin .endfor ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/fastDNAml - ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_doc_1.2.txt ${PREFIX}/share/doc/fastDNAml - ${INSTALL_DATA} ${WRKSRC}/docs/fastDNAml_scripts.txt ${PREFIX}/share/doc/fastDNAml +.for DOC in fastDNAml_doc_1.2.txt fastDNAml_scripts.txt + ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/docs/${DOC} ${PREFIX}/share/doc/fastDNAml +.endfor .include "../../mk/bsd.pkg.mk" diff --git a/biology/fastDNAml/distinfo b/biology/fastDNAml/distinfo index de02d9edae9..cb0b14cb8e9 100644 --- a/biology/fastDNAml/distinfo +++ b/biology/fastDNAml/distinfo @@ -1,4 +1,4 @@ -$NetBSD: distinfo,v 1.2 2001/04/19 16:02:24 agc Exp $ +$NetBSD: distinfo,v 1.3 2004/08/16 23:45:59 ben Exp $ -SHA1 (fastDNAml_1.2.1.tar.gz) = f61a11f69746ad80e2009594f229db331cfbb8d0 -Size (fastDNAml_1.2.1.tar.gz) = 63110 bytes +SHA1 (fastDNAml_1.2.2.tar.gz) = 78197cbd760163f65085ac80c36d4286a1f29e34 +Size (fastDNAml_1.2.2.tar.gz) = 70005 bytes |