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| author | jschauma <jschauma@pkgsrc.org> | 2003-09-27 23:46:55 +0000 |
|---|---|---|
| committer | jschauma <jschauma@pkgsrc.org> | 2003-09-27 23:46:55 +0000 |
| commit | d8446188516c2dceac15b78a84fe470e9ccc4901 (patch) | |
| tree | 5fa1d14df257fbd1433a1068d75e5d3f49b82952 /biology | |
| parent | b96187c402f1fba9f60129356f1b782ba9b98f35 (diff) | |
| download | pkgsrc-d8446188516c2dceac15b78a84fe470e9ccc4901.tar.gz | |
Initial import of stride, one of the many packages provided by
brook at biology dot nmsu dot edu and his team at NMSU.
Knowledge-based protein secondary structure assignment from atomic
coordinates.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/stride/DESCR | 2 | ||||
| -rw-r--r-- | biology/stride/Makefile | 19 | ||||
| -rw-r--r-- | biology/stride/PLIST | 2 | ||||
| -rw-r--r-- | biology/stride/distinfo | 5 | ||||
| -rw-r--r-- | biology/stride/patches/patch-aa | 27 |
5 files changed, 55 insertions, 0 deletions
diff --git a/biology/stride/DESCR b/biology/stride/DESCR new file mode 100644 index 00000000000..ed351a5bcef --- /dev/null +++ b/biology/stride/DESCR @@ -0,0 +1,2 @@ +Knowledge-based protein secondary structure assignment from atomic +coordinates. diff --git a/biology/stride/Makefile b/biology/stride/Makefile new file mode 100644 index 00000000000..9a9b15275b2 --- /dev/null +++ b/biology/stride/Makefile @@ -0,0 +1,19 @@ +# $NetBSD: Makefile,v 1.1.1.1 2003/09/27 23:46:55 jschauma Exp $ +# + +DISTNAME= stride +PKGNAME= stride-20030804 +WRKSRC= ${WRKDIR} +CATEGORIES= biology +MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/ + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= http://www-db.embl-heidelberg.de/jss/servlet/de.embl.bk.wwwTools.GroupLeftEMBL/argos/stride/stride_info.html +COMMENT= Protein secondary structure assignment from atomic coordinates + +USE_BUILDLINK2= YES + +do-install: + ${INSTALL_PROGRAM} ${WRKDIR}/stride ${PREFIX}/bin + +.include "../../mk/bsd.pkg.mk" diff --git a/biology/stride/PLIST b/biology/stride/PLIST new file mode 100644 index 00000000000..339833f73f5 --- /dev/null +++ b/biology/stride/PLIST @@ -0,0 +1,2 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 23:46:56 jschauma Exp $ +bin/stride diff --git a/biology/stride/distinfo b/biology/stride/distinfo new file mode 100644 index 00000000000..4b41d407d98 --- /dev/null +++ b/biology/stride/distinfo @@ -0,0 +1,5 @@ +$NetBSD: distinfo,v 1.1.1.1 2003/09/27 23:46:56 jschauma Exp $ + +SHA1 (stride.tar.gz) = f85cca717c79200bf33fa3a80323ccd9da471669 +Size (stride.tar.gz) = 56441 bytes +SHA1 (patch-aa) = b9f0469f078b4018af0de5e3aff524b831fc3703 diff --git a/biology/stride/patches/patch-aa b/biology/stride/patches/patch-aa new file mode 100644 index 00000000000..a6507c2f703 --- /dev/null +++ b/biology/stride/patches/patch-aa @@ -0,0 +1,27 @@ +$NetBSD: patch-aa,v 1.1.1.1 2003/09/27 23:46:56 jschauma Exp $ + +--- Makefile.orig 2003-09-27 19:39:02.000000000 -0400 ++++ Makefile 2003-09-27 19:39:47.000000000 -0400 +@@ -1,18 +1,19 @@ + #CC = gcc -O2 # ->> for DJGPP compiler under DOS and for SunOS; also suitable for other machines + +-CC = cc -O2 + FLAGS = -lm -o + + SOURCE = stride.c splitstr.c rdpdb.c initchn.c geometry.c thr2one.c one2thr.c filename.c tolostr.c strutil.c place_h.c hbenergy.c memory.c helix.c sheet.c rdmap.c phipsi.c command.c molscr.c die.c hydrbond.c mergepat.c fillasn.c escape.c p_jrnl.c p_rem.c p_atom.c p_helix.c p_sheet.c p_turn.c p_ssbond.c p_expdta.c p_model.c p_compnd.c report.c nsc.c area.c ssbond.c chk_res.c chk_atom.c turn.c pdbasn.c dssp.c outseq.c chkchain.c elem.c measure.c asngener.c p_endmdl.c stred.c + + OBJECT = ${SOURCE:.c=.o} + ++all: stride ++ + .c.o: +- $(CC) -c $< -o $@ ++ $(CC) ${CFLAGS} -c $< -o $@ + + + stride : $(OBJECT) +- $(CC) $(OBJECT) $(FLAGS) stride ++ $(CC) $(OBJECT) ${LDFLAGS} $(FLAGS) stride + + $(OBJECT) : stride.h protot.h + |