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authorwiz <wiz@pkgsrc.org>2000-03-13 04:41:58 +0000
committerwiz <wiz@pkgsrc.org>2000-03-13 04:41:58 +0000
commit2a1d050c828bd4dd07e6f6f3a967bf9ce42f07bd (patch)
tree9825a86baf674262bff115ce4809c9a6ec1e80d9 /biology
parent4d92a267e8bbc48a98ba3024ffe8f22e0c958242 (diff)
downloadpkgsrc-2a1d050c828bd4dd07e6f6f3a967bf9ce42f07bd.tar.gz
RasMol is a molecular graphics program intended for the visualisation of
proteins, nucleic acids and small molecules. The program is aimed at display, teaching and generation of publication quality images. Submitted by Marc Bauoin <babafou@babafou.eu.org> in pkg/8199, slightly enhanced.
Diffstat (limited to 'biology')
-rw-r--r--biology/rasmol/Makefile49
-rw-r--r--biology/rasmol/files/md53
-rw-r--r--biology/rasmol/files/patch-sum5
-rw-r--r--biology/rasmol/patches/patch-aa31
-rw-r--r--biology/rasmol/patches/patch-ab12
-rw-r--r--biology/rasmol/patches/patch-ac13
-rw-r--r--biology/rasmol/pkg/COMMENT1
-rw-r--r--biology/rasmol/pkg/DESCR6
-rw-r--r--biology/rasmol/pkg/PLIST30
9 files changed, 150 insertions, 0 deletions
diff --git a/biology/rasmol/Makefile b/biology/rasmol/Makefile
new file mode 100644
index 00000000000..22f1228bfe8
--- /dev/null
+++ b/biology/rasmol/Makefile
@@ -0,0 +1,49 @@
+# $NetBSD: Makefile,v 1.1.1.1 2000/03/13 04:41:58 wiz Exp $
+
+DISTNAME= RasMol_2.7.1
+PKGNAME= rasmol-2.7.1
+WRKSRC= ${WRKDIR}/${DISTNAME}/src
+CATEGORIES= biology
+MASTER_SITES= ftp://ftp.bernstein-plus-sons.com/software/
+
+MAINTAINER= packages@netbsd.org
+HOMEPAGE= http://www.bernstein-plus-sons.com/software/rasmol/
+
+USE_IMAKE= YES
+
+MAKE_ENV+= "DEPTHDEF=${DEPTHDEF}"
+
+post-patch:
+ ${LN} -sf ${WRKDIR}/${DISTNAME}/doc ${WRKSRC}
+ ${LN} -sf ${WRKDIR}/${DISTNAME}/data ${WRKSRC}
+ ${GUNZIP_CMD} ${WRKDIR}/${DISTNAME}/doc/rasmol.1.gz
+ cd ${WRKSRC} && ${SED} "s#@@PREFIX@@#${PREFIX}#" rasmol.h > \
+ rasmol.h.new && ${MV} rasmol.h.new rasmol.h
+
+post-install:
+ ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/NOTICE ${PREFIX}/share/doc/rasmol
+.for DOC in manualA4.pdf.gz manualA4.ps.gz manualA4.rtf.gz \
+ manualUS.pdf.gz manualUS.ps.gz manualUS.rtf.gz \
+ refcardA4.pdf.gz refcardA4.ps.gz refcardA4.rtf.gz \
+ refcardUS.pdf.gz refcardUS.ps.gz refcardUS.rtf.gz
+ ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/${DOC} \
+ ${PREFIX}/share/doc/rasmol
+.endfor
+.for DATA in 1crn.pdb 1gpd.pdb.gz 1ldb.pdb.gz 1ldm.pdb.gz 3cro.pdb \
+ 4hir.ent.gz 4ins.CIF 7lyz.pdb IUCR9800028.cif asprin.alc \
+ pdb2mcg.ent
+ ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/data/${DATA} \
+ ${PREFIX}/share/examples/rasmol
+.endfor
+
+.include "../../mk/bsd.pkg.mk"
+
+# test must be below inclusion of bsd.pkg.mk
+DEPTHDEF= -DEIGHTBIT
+.if defined(RASMOL_DEPTH)
+.if ${RASMOL_DEPTH} == 32
+DEPTHDEF= -DTHIRTYTWOBIT
+.else if ${RASMOL_DEPTH} == 16
+DEPTHDEF= -DSIXTEENBIT
+.endif
+.endif
diff --git a/biology/rasmol/files/md5 b/biology/rasmol/files/md5
new file mode 100644
index 00000000000..260eb9c14b0
--- /dev/null
+++ b/biology/rasmol/files/md5
@@ -0,0 +1,3 @@
+$NetBSD: md5,v 1.1.1.1 2000/03/13 04:41:59 wiz Exp $
+
+MD5 (RasMol_2.7.1.tar.gz) = e01035d1af2a1595874bbee0989cc24c
diff --git a/biology/rasmol/files/patch-sum b/biology/rasmol/files/patch-sum
new file mode 100644
index 00000000000..919ef52416b
--- /dev/null
+++ b/biology/rasmol/files/patch-sum
@@ -0,0 +1,5 @@
+$NetBSD: patch-sum,v 1.1.1.1 2000/03/13 04:41:59 wiz Exp $
+
+MD5 (patch-aa) = 00337b01d0d0b010af698560ffc684bc
+MD5 (patch-ab) = 0f9bf72be7050fb896733795af9bbdf6
+MD5 (patch-ac) = 2649d3710396235653f9e5053def3c38
diff --git a/biology/rasmol/patches/patch-aa b/biology/rasmol/patches/patch-aa
new file mode 100644
index 00000000000..955876b679d
--- /dev/null
+++ b/biology/rasmol/patches/patch-aa
@@ -0,0 +1,31 @@
+$NetBSD: patch-aa,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+
+--- Imakefile.orig Tue Jul 6 01:48:28 1999
++++ Imakefile Mon Mar 13 04:25:00 2000
+@@ -60,11 +60,12 @@
+
+ # DEPTHDEF = -DTHIRTYTWOBIT
+ # DEPTHDEF = -DSIXTEENBIT
+-DEPTHDEF = -DEIGHTBIT
++# DEPTHDEF = -DEIGHTBIT
+
+ # RasMol's on-line help direcory
+ # e.g. /usr/local/lib/rasmol/rasmol.hlp
+-RASMOLDIR = $(USRLIBDIR)/rasmol/
++RASMOLDIR = $(PREFIX)/share/doc/rasmol/
++RASMOLDATADIR = $(PREFIX)/share/examples/rasmol/
+
+
+
+@@ -104,8 +105,9 @@
+ ComplexProgramTarget(rasmol)
+ MakeDirectories(install,$(RASMOLDIR))
+ InstallNonExec(rasmol.hlp,$(RASMOLDIR))
+-InstallNonExec(data/1crn.pdb,$(RASMOLDIR))
+-InstallNonExec(data/3cro.pdb,$(RASMOLDIR))
++MakeDirectories(install,$(RASMOLDATADIR))
++InstallNonExec(data/1crn.pdb,$(RASMOLDATADIR))
++InstallNonExec(data/3cro.pdb,$(RASMOLDATADIR))
+
+ rasmol.man:: doc/rasmol.1
+ ln -s doc/rasmol.1 rasmol.man
diff --git a/biology/rasmol/patches/patch-ab b/biology/rasmol/patches/patch-ab
new file mode 100644
index 00000000000..aae08d6a852
--- /dev/null
+++ b/biology/rasmol/patches/patch-ab
@@ -0,0 +1,12 @@
+$NetBSD: patch-ab,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+
+--- cif_ctonum.c.orig Thu Aug 5 23:11:05 1999
++++ cif_ctonum.c Thu Aug 5 23:11:11 1999
+@@ -168,7 +168,6 @@
+ extern "C" {
+ #endif
+
+-#define _USE_RASMOL_H_
+ #ifdef _USE_RASMOL_H_
+ #include "rasmol.h"
+ #else
diff --git a/biology/rasmol/patches/patch-ac b/biology/rasmol/patches/patch-ac
new file mode 100644
index 00000000000..d887f083e87
--- /dev/null
+++ b/biology/rasmol/patches/patch-ac
@@ -0,0 +1,13 @@
+$NetBSD: patch-ac,v 1.1.1.1 2000/03/13 04:42:00 wiz Exp $
+
+--- rasmol.h.orig Tue Jul 6 01:56:01 1999
++++ rasmol.h Mon Mar 13 05:00:32 2000
+@@ -103,7 +103,7 @@
+ #endif
+
+ #if !defined(IBMPC) && !defined(APPLEMAC) && !defined(VMS)
+-#define RASMOLDIR "/usr/local/lib/rasmol/"
++#define RASMOLDIR "@@PREFIX@@/share/doc/rasmol/"
+ #endif
+ #endif
+
diff --git a/biology/rasmol/pkg/COMMENT b/biology/rasmol/pkg/COMMENT
new file mode 100644
index 00000000000..3d8b5fc87ba
--- /dev/null
+++ b/biology/rasmol/pkg/COMMENT
@@ -0,0 +1 @@
+Molecular Graphics Visualisation Tool
diff --git a/biology/rasmol/pkg/DESCR b/biology/rasmol/pkg/DESCR
new file mode 100644
index 00000000000..090e71520df
--- /dev/null
+++ b/biology/rasmol/pkg/DESCR
@@ -0,0 +1,6 @@
+RasMol is a molecular graphics program intended for the visualisation of
+proteins, nucleic acids and small molecules. The program is aimed at
+display, teaching and generation of publication quality images. The program
+has been developed at the University of Edinburgh's Biocomputing Research
+Unit and the Biomolecular Structures Group at Glaxo Research and
+Development, Greenford, UK.
diff --git a/biology/rasmol/pkg/PLIST b/biology/rasmol/pkg/PLIST
new file mode 100644
index 00000000000..d44f5a7783a
--- /dev/null
+++ b/biology/rasmol/pkg/PLIST
@@ -0,0 +1,30 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 2000/03/13 04:41:59 wiz Exp $
+bin/rasmol
+share/doc/rasmol/rasmol.hlp
+share/doc/rasmol/NOTICE
+share/doc/rasmol/manualA4.pdf.gz
+share/doc/rasmol/manualA4.ps.gz
+share/doc/rasmol/manualA4.rtf.gz
+share/doc/rasmol/manualUS.pdf.gz
+share/doc/rasmol/manualUS.ps.gz
+share/doc/rasmol/manualUS.rtf.gz
+share/doc/rasmol/refcardA4.pdf.gz
+share/doc/rasmol/refcardA4.ps.gz
+share/doc/rasmol/refcardA4.rtf.gz
+share/doc/rasmol/refcardUS.pdf.gz
+share/doc/rasmol/refcardUS.ps.gz
+share/doc/rasmol/refcardUS.rtf.gz
+@dirrm share/doc/rasmol
+share/examples/rasmol/1crn.pdb
+share/examples/rasmol/1gpd.pdb.gz
+share/examples/rasmol/1ldb.pdb.gz
+share/examples/rasmol/1ldm.pdb.gz
+share/examples/rasmol/3cro.pdb
+share/examples/rasmol/4hir.ent.gz
+share/examples/rasmol/4ins.CIF
+share/examples/rasmol/7lyz.pdb
+share/examples/rasmol/IUCR9800028.cif
+share/examples/rasmol/asprin.alc
+share/examples/rasmol/pdb2mcg.ent
+@dirrm share/examples/rasmol
+man/cat1/rasmol.0