summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorrodent <rodent@pkgsrc.org>2013-04-06 13:24:18 +0000
committerrodent <rodent@pkgsrc.org>2013-04-06 13:24:18 +0000
commitf565a1af87ccaccae3cfc89af55ee17f3d8ff47b (patch)
tree7e09ae380f09209fdebcf2ee8170c971a410c319 /biology
parent45ba4e37fd8e682cf12febc192ee0302681bfa77 (diff)
downloadpkgsrc-f565a1af87ccaccae3cfc89af55ee17f3d8ff47b.tar.gz
".for variable names should not contain uppercase letters"
Diffstat (limited to 'biology')
-rw-r--r--biology/genesplicer/Makefile6
-rw-r--r--biology/glimmer/Makefile10
-rw-r--r--biology/xylem/Makefile6
3 files changed, 11 insertions, 11 deletions
diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile
index 53c1f335cea..7b5e9ff731b 100644
--- a/biology/genesplicer/Makefile
+++ b/biology/genesplicer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.12 2012/09/11 20:32:12 asau Exp $
+# $NetBSD: Makefile,v 1.13 2013/04/06 13:24:18 rodent Exp $
#
DISTNAME= GeneSplicer
@@ -24,8 +24,8 @@ INSTALLATION_DIRS= bin
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/sources/genesplicer ${DESTDIR}${PREFIX}/bin
${INSTALL_DATA_DIR} ${DESTDIR}${EXDIR}
-.for DOC in readme fasta.example fasta.results
- ${INSTALL_DATA} ${WRKSRC}/sources/${DOC} ${DESTDIR}${EXDIR}
+.for doc in readme fasta.example fasta.results
+ ${INSTALL_DATA} ${WRKSRC}/sources/${doc} ${DESTDIR}${EXDIR}
.endfor
cd ${WRKSRC} && pax -rw ${EXAMPLES} ${DESTDIR}${EXDIR}
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile
index 903dbf559c3..a755f0cdb75 100644
--- a/biology/glimmer/Makefile
+++ b/biology/glimmer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.12 2012/09/16 17:20:17 cheusov Exp $
+# $NetBSD: Makefile,v 1.13 2013/04/06 13:24:18 rodent Exp $
#
DISTNAME= glimmer213
@@ -19,16 +19,16 @@ WRKSRC= ${WRKDIR}/glimmer2.13
INSTALLATION_DIRS= bin
do-install:
-.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \
+.for program in adjust anomaly build-icm check codon-usage compare-lists \
generate get-len get-putative glimmer2 long-orfs
- ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${DESTDIR}${PREFIX}/bin
+ ${INSTALL_PROGRAM} ${WRKSRC}/${program} ${DESTDIR}${PREFIX}/bin
.endfor
# ``extract'' is also in the csound package, so rename to avoid conflict
${INSTALL_PROGRAM} ${WRKSRC}/extract ${DESTDIR}${PREFIX}/bin/glextract
${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/glimmer
${CP} ${WRKSRC}/README ${WRKSRC}/run-glimmer2.readme
-.for DOC in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme
- ${INSTALL_DATA} ${WRKSRC}/${DOC} ${DESTDIR}${PREFIX}/share/doc/glimmer
+.for doc in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme
+ ${INSTALL_DATA} ${WRKSRC}/${doc} ${DESTDIR}${PREFIX}/share/doc/glimmer
.endfor
${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/glimmer
${INSTALL_SCRIPT} ${WRKSRC}/run-glimmer2 ${DESTDIR}${PREFIX}/share/glimmer
diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile
index 223bb00ab88..4ba7c051637 100644
--- a/biology/xylem/Makefile
+++ b/biology/xylem/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.10 2012/09/11 20:32:14 asau Exp $
+# $NetBSD: Makefile,v 1.11 2013/04/06 13:24:18 rodent Exp $
#
DISTNAME= xylem.1.8.7
@@ -27,9 +27,9 @@ post-build:
${MV} ${WRKSRC}/src.c/shuffle ${WRKSRC}/src.c/xyl-shuffle
do-install:
-.for PROGRAM in dbstat getloc getob xyl-identify prot2nuc reform ribosome \
+.for program in dbstat getloc getob xyl-identify prot2nuc reform ribosome \
splitdb xyl-shuffle flat2phyl phyl2flat
- ${INSTALL_PROGRAM} ${WRKSRC}/src.c/${PROGRAM} ${DESTDIR}${PREFIX}/bin
+ ${INSTALL_PROGRAM} ${WRKSRC}/src.c/${program} ${DESTDIR}${PREFIX}/bin
.endfor
${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/xylem
${INSTALL_DATA} ${WRKSRC}/doc/* ${DESTDIR}${PREFIX}/share/doc/xylem/