summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorjlam <jlam@pkgsrc.org>2005-06-16 06:57:37 +0000
committerjlam <jlam@pkgsrc.org>2005-06-16 06:57:37 +0000
commit81edaaa606a86e87c2885489ad72ee9908969aba (patch)
tree3ccd645970d07eb5e027f9f4978696237c5cd04b /biology
parent8b982bf812954ec2be8cdc97dbf2d9dd2be7779e (diff)
downloadpkgsrc-81edaaa606a86e87c2885489ad72ee9908969aba.tar.gz
Create directories before installing files into them.
Diffstat (limited to 'biology')
-rw-r--r--biology/coalesce/Makefile4
-rw-r--r--biology/fastDNAml/Makefile4
-rw-r--r--biology/fluctuate/Makefile4
-rw-r--r--biology/genesplicer/Makefile3
-rw-r--r--biology/glimmer/Makefile3
-rw-r--r--biology/mummer/Makefile3
-rw-r--r--biology/nut/Makefile4
-rw-r--r--biology/pdbalign/Makefile3
-rw-r--r--biology/phylip/Makefile4
-rw-r--r--biology/profit/Makefile3
-rw-r--r--biology/stride/Makefile3
-rw-r--r--biology/xylem/Makefile3
12 files changed, 29 insertions, 12 deletions
diff --git a/biology/coalesce/Makefile b/biology/coalesce/Makefile
index 984ed61b1cc..85d25fbd57e 100644
--- a/biology/coalesce/Makefile
+++ b/biology/coalesce/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= coalesce1.5b
@@ -18,6 +18,8 @@ EXDIR= ${PREFIX}/share/examples/coalesce
DOCFILES= coalesce.doc errors.doc readme
EXFILES= bestree infile intree outfile parmfile seedfile
+INSTALLATION_DIRS= bin
+
do-install:
${INSTALL_DATA_DIR} ${DOCDIR}
${INSTALL_DATA_DIR} ${EXDIR}
diff --git a/biology/fastDNAml/Makefile b/biology/fastDNAml/Makefile
index 3ca124a921e..ef7ec12fc43 100644
--- a/biology/fastDNAml/Makefile
+++ b/biology/fastDNAml/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2005/05/07 20:55:26 kristerw Exp $
+# $NetBSD: Makefile,v 1.8 2005/06/16 06:57:40 jlam Exp $
DISTNAME= fastDNAml_1.2.2
PKGNAME= fastDNAml-1.2.2
@@ -11,6 +11,8 @@ COMMENT= Program derived from Joseph Felsenstein's version 3.3 DNAML
WRKSRC= ${WRKDIR}/${DISTNAME}/source
+INSTALLATION_DIRS= bin
+
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/fastDNAml ${PREFIX}/bin
.for SCRIPT in ae2dnaml bootstrap categories categories_file \
diff --git a/biology/fluctuate/Makefile b/biology/fluctuate/Makefile
index 575649ceee1..1769b26eb68 100644
--- a/biology/fluctuate/Makefile
+++ b/biology/fluctuate/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= fluctuate1.4.src.doc
@@ -18,6 +18,8 @@ EXDIR= ${PREFIX}/share/examples/fluctuate
DOCFILES= fluctuate.doc errors.doc
EXFILES= bestree infile outfile
+INSTALLATION_DIRS= bin
+
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/fluctuate ${PREFIX}/bin/
${INSTALL_DATA_DIR} ${DOCDIR}
diff --git a/biology/genesplicer/Makefile b/biology/genesplicer/Makefile
index 111b9c69d89..537a0d4527a 100644
--- a/biology/genesplicer/Makefile
+++ b/biology/genesplicer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/05/23 08:56:25 rillig Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= GeneSplicer
@@ -16,6 +16,7 @@ EXAMPLES= arabidopsis drosophila malaria pyoelii human rice \
training_data_sets/Human
MAKEFILE= makefile
WRKSRC= ${WRKDIR}/GeneSplicer/sources
+INSTALLATION_DIRS= bin
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/genesplicer ${PREFIX}/bin
diff --git a/biology/glimmer/Makefile b/biology/glimmer/Makefile
index 773b35c96f6..2fa2ae41cd4 100644
--- a/biology/glimmer/Makefile
+++ b/biology/glimmer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2005/04/11 21:45:00 tv Exp $
+# $NetBSD: Makefile,v 1.7 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= glimmer213
@@ -11,6 +11,7 @@ HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/
COMMENT= System for finding genes in microbial DNA
WRKSRC= ${WRKDIR}/glimmer2.13
+INSTALLATION_DIRS= bin
do-install:
.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index ee0dd58b935..1d3f67d4bb8 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2005/05/22 20:07:40 jlam Exp $
+# $NetBSD: Makefile,v 1.7 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= MUMmer3.15
@@ -14,6 +14,7 @@ WRKSRC= ${WRKDIR}/${DISTNAME}
USE_TOOLS+= gmake
MAKE_ENV+= SH="${SH}"
+INSTALLATION_DIRS= bin
do-install:
.for PROGRAM in annotate combineMUMs gaps mgaps mummer repeat-match \
diff --git a/biology/nut/Makefile b/biology/nut/Makefile
index 2daf8e5e8b3..e3ac5a37657 100644
--- a/biology/nut/Makefile
+++ b/biology/nut/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.19 2005/05/22 20:07:40 jlam Exp $
+# $NetBSD: Makefile,v 1.20 2005/06/16 06:57:40 jlam Exp $
DISTNAME= nut-10.18
CATEGORIES= biology
@@ -12,6 +12,8 @@ COMMENT= Record what you eat and analyze your meals
BUILD_TARGET= nut
USE_TOOLS+= gmake
+INSTALLATION_DIRS= bin man/man1
+
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/nut ${PREFIX}/bin
${INSTALL_DATA_DIR} ${PREFIX}/share/nut
diff --git a/biology/pdbalign/Makefile b/biology/pdbalign/Makefile
index e91b270d53c..b0c74d6eebb 100644
--- a/biology/pdbalign/Makefile
+++ b/biology/pdbalign/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.2 2004/01/20 12:08:40 agc Exp $
+# $NetBSD: Makefile,v 1.3 2005/06/16 06:57:40 jlam Exp $
#
DISTNAME= pdbalign
@@ -11,6 +11,7 @@ HOMEPAGE= #empty
COMMENT= Prediction of Protein Secondary Structure and Active Sites
WRKSRC= ${WRKDIR}
+INSTALLATION_DIRS= bin
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/pdbalign ${PREFIX}/bin
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
index eb9edb42999..93854fd3b55 100644
--- a/biology/phylip/Makefile
+++ b/biology/phylip/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.10 2005/06/01 18:02:40 jlam Exp $
+# $NetBSD: Makefile,v 1.11 2005/06/16 06:57:40 jlam Exp $
DISTNAME= phylip-3.61
CATEGORIES= biology
@@ -14,6 +14,8 @@ NO_BIN_ON_CDROM= ${RESTRICTED}
WRKSRC= ${WRKDIR}/${DISTNAME}/src
+INSTALLATION_DIRS= bin
+
.include "../../mk/x11.buildlink3.mk"
do-install:
diff --git a/biology/profit/Makefile b/biology/profit/Makefile
index c6536b01a52..5a9ec5c0f26 100644
--- a/biology/profit/Makefile
+++ b/biology/profit/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.7 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.8 2005/06/16 06:57:41 jlam Exp $
#
DISTNAME= profit
@@ -13,6 +13,7 @@ COMMENT= Performs least squares fits of two protein structures
DIST_SUBDIR= ${DISTNAME}
BUILD_TARGET= ${DISTNAME}
WRKSRC= ${WRKDIR}/ProFitV2.2/src
+INSTALLATION_DIRS= bin
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/profit ${PREFIX}/bin
diff --git a/biology/stride/Makefile b/biology/stride/Makefile
index 703c6df68a7..03e990d1d22 100644
--- a/biology/stride/Makefile
+++ b/biology/stride/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.5 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.6 2005/06/16 06:57:41 jlam Exp $
#
DISTNAME= stride
@@ -11,6 +11,7 @@ HOMEPAGE= http://wolf.bi.umist.ac.uk/unix/stride.html
COMMENT= Protein secondary structure assignment from atomic coordinates
WRKSRC= ${WRKDIR}
+INSTALLATION_DIRS= bin
do-install:
${INSTALL_PROGRAM} ${WRKDIR}/stride ${PREFIX}/bin
diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile
index 6aba269cab7..8e7bab5d9d6 100644
--- a/biology/xylem/Makefile
+++ b/biology/xylem/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.4 2005/04/11 21:45:01 tv Exp $
+# $NetBSD: Makefile,v 1.5 2005/06/16 06:57:41 jlam Exp $
#
DISTNAME= xylem.1.8.7
@@ -12,6 +12,7 @@ HOMEPAGE= http://home.cc.umanitoba.ca/~psgendb/XYLEM.html
COMMENT= Tools for manipulation of genetic databases
WRKSRC= ${WRKDIR}/xylem/src.c
+INSTALLATION_DIRS= bin
do-configure:
${CP} ${WRKSRC}/p2c.h.standard ${WRKSRC}/p2c.h