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authorleot <leot@pkgsrc.org>2015-10-14 17:12:52 +0000
committerleot <leot@pkgsrc.org>2015-10-14 17:12:52 +0000
commitc9c64af079a7c742492b90399ae88b78a632888e (patch)
tree50bcdaddb335973a581dfb8e494ec75078b593c8 /biology
parent0b0a3ac8bcbf9abf2d99ea4fc3352b71344aac79 (diff)
downloadpkgsrc-c9c64af079a7c742492b90399ae88b78a632888e.tar.gz
Import biology/bwa as bwa-0.7.9a.
Packaged in pkgsrc-wip by Jason Bacon. BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome.
Diffstat (limited to 'biology')
-rw-r--r--biology/bwa/DESCR2
-rw-r--r--biology/bwa/Makefile28
-rw-r--r--biology/bwa/PLIST5
-rw-r--r--biology/bwa/distinfo5
4 files changed, 40 insertions, 0 deletions
diff --git a/biology/bwa/DESCR b/biology/bwa/DESCR
new file mode 100644
index 00000000000..1a8e65be4a9
--- /dev/null
+++ b/biology/bwa/DESCR
@@ -0,0 +1,2 @@
+BWA is a software package for mapping low-divergent sequences against a large
+reference genome, such as the human genome.
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
new file mode 100644
index 00000000000..bf9f30e8504
--- /dev/null
+++ b/biology/bwa/Makefile
@@ -0,0 +1,28 @@
+# $NetBSD: Makefile,v 1.1 2015/10/14 17:12:52 leot Exp $
+#
+###########################################################
+# Generated by fbsd2pkg #
+###########################################################
+
+DISTNAME= bwa-0.7.9a
+CATEGORIES= biology
+MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bio-bwa/}
+EXTRACT_SUFX= .tar.bz2
+
+MAINTAINER= jwbacon@tds.net
+HOMEPAGE= http://bio-bwa.sourceforge.net/
+COMMENT= Map low-divergent sequences against a large reference genome
+LICENSE= gnu-gpl-v3
+
+USE_TOOLS+= perl:run gmake
+REPLACE_PERL= *.pl
+
+INSTALLATION_DIRS= bin ${PKGMANDIR}/man1
+
+do-install:
+ ${INSTALL_PROGRAM} ${WRKSRC}/bwa ${DESTDIR}${PREFIX}/bin
+ ${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${DESTDIR}${PREFIX}/bin
+ ${INSTALL_MAN} ${WRKSRC}/*.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1
+
+.include "../../devel/zlib/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/biology/bwa/PLIST b/biology/bwa/PLIST
new file mode 100644
index 00000000000..e218473248f
--- /dev/null
+++ b/biology/bwa/PLIST
@@ -0,0 +1,5 @@
+@comment $NetBSD: PLIST,v 1.1 2015/10/14 17:12:52 leot Exp $
+bin/bwa
+bin/qualfa2fq.pl
+bin/xa2multi.pl
+man/man1/bwa.1
diff --git a/biology/bwa/distinfo b/biology/bwa/distinfo
new file mode 100644
index 00000000000..ed4e8824b4b
--- /dev/null
+++ b/biology/bwa/distinfo
@@ -0,0 +1,5 @@
+$NetBSD: distinfo,v 1.1 2015/10/14 17:12:52 leot Exp $
+
+SHA1 (bwa-0.7.9a.tar.bz2) = a77ce327e8acba554b1d27bfdd1c148f79726484
+RMD160 (bwa-0.7.9a.tar.bz2) = a51b7c686a206144eab2aee0a372d5ae46fcfce1
+Size (bwa-0.7.9a.tar.bz2) = 166193 bytes