summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorwiz <wiz@pkgsrc.org>2018-08-22 09:42:51 +0000
committerwiz <wiz@pkgsrc.org>2018-08-22 09:42:51 +0000
commit7da3396fbc255a2e05a47f1ec8d0d4651809b018 (patch)
treea850c34dd49b5e6bde60c6e0b6280637f411e838 /biology
parenteabc5364f14ce27ce590642bd937cf2a5d1a56c1 (diff)
downloadpkgsrc-7da3396fbc255a2e05a47f1ec8d0d4651809b018.tar.gz
Recursive bump for perl5-5.28.0
Diffstat (limited to 'biology')
-rw-r--r--biology/bioperl/Makefile3
-rw-r--r--biology/bodr/Makefile4
-rw-r--r--biology/bwa/Makefile4
-rw-r--r--biology/cdhit/Makefile4
-rw-r--r--biology/gnome-chemistry-utils/Makefile4
-rw-r--r--biology/gromacs/Makefile4
-rw-r--r--biology/htslib/Makefile3
-rw-r--r--biology/mpqc/Makefile4
-rw-r--r--biology/mummer/Makefile4
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/Makefile3
-rw-r--r--biology/samtools/Makefile3
11 files changed, 22 insertions, 18 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile
index 153724b8e92..9dc88e0f412 100644
--- a/biology/bioperl/Makefile
+++ b/biology/bioperl/Makefile
@@ -1,7 +1,8 @@
-# $NetBSD: Makefile,v 1.35 2017/09/17 07:48:11 wiz Exp $
+# $NetBSD: Makefile,v 1.36 2018/08/22 09:42:59 wiz Exp $
DISTNAME= BioPerl-1.007002
PKGNAME= ${DISTNAME:tl}
+PKGREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
diff --git a/biology/bodr/Makefile b/biology/bodr/Makefile
index 5e44d8b1c57..2a50fddf87f 100644
--- a/biology/bodr/Makefile
+++ b/biology/bodr/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.10 2017/08/01 17:40:08 wiz Exp $
+# $NetBSD: Makefile,v 1.11 2018/08/22 09:42:59 wiz Exp $
#
DISTNAME= bodr-9
-PKGREVISION= 7
+PKGREVISION= 8
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bodr/}
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
index b382e4a148d..efdb04f05e7 100644
--- a/biology/bwa/Makefile
+++ b/biology/bwa/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.6 2017/12/27 23:44:01 he Exp $
+# $NetBSD: Makefile,v 1.7 2018/08/22 09:42:59 wiz Exp $
DISTNAME= bwa-0.7.17
CATEGORIES= biology
-PKGREVISION= 1
+PKGREVISION= 2
GITHUB_TAG= v${PKGVERSION_NOREV}
MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/}
diff --git a/biology/cdhit/Makefile b/biology/cdhit/Makefile
index a851d1f2d04..d918b08d91f 100644
--- a/biology/cdhit/Makefile
+++ b/biology/cdhit/Makefile
@@ -1,11 +1,11 @@
-# $NetBSD: Makefile,v 1.3 2018/07/04 13:40:09 jperkin Exp $
+# $NetBSD: Makefile,v 1.4 2018/08/22 09:42:59 wiz Exp $
#
###########################################################
# Generated by fbsd2pkg #
###########################################################
DISTNAME= cdhit-4.6.4
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=weizhongli/}
GITHUB_TAG= V${PKGVERSION_NOREV}
diff --git a/biology/gnome-chemistry-utils/Makefile b/biology/gnome-chemistry-utils/Makefile
index b0a3764f26f..c320652d055 100644
--- a/biology/gnome-chemistry-utils/Makefile
+++ b/biology/gnome-chemistry-utils/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.35 2018/04/16 14:34:10 wiz Exp $
+# $NetBSD: Makefile,v 1.36 2018/08/22 09:42:59 wiz Exp $
#
DISTNAME= gnome-chemistry-utils-0.12.13
-PKGREVISION= 24
+PKGREVISION= 25
CATEGORIES= biology
MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/gromacs/Makefile b/biology/gromacs/Makefile
index 3f3682a1a05..f06f2deda20 100644
--- a/biology/gromacs/Makefile
+++ b/biology/gromacs/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.16 2016/07/09 06:37:51 wiz Exp $
+# $NetBSD: Makefile,v 1.17 2018/08/22 09:42:59 wiz Exp $
#
DISTNAME= gromacs-4.5.5
-PKGREVISION= 6
+PKGREVISION= 7
CATEGORIES= biology
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 2c20fc95652..8f2694c732e 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2018/07/04 13:40:09 jperkin Exp $
+# $NetBSD: Makefile,v 1.3 2018/08/22 09:42:59 wiz Exp $
DISTNAME= htslib-1.8
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
GITHUB_PROJECT= htslib
diff --git a/biology/mpqc/Makefile b/biology/mpqc/Makefile
index ab45735bb19..3230981ee34 100644
--- a/biology/mpqc/Makefile
+++ b/biology/mpqc/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.13 2018/01/01 01:16:43 rillig Exp $
+# $NetBSD: Makefile,v 1.14 2018/08/22 09:42:59 wiz Exp $
DISTNAME= mpqc-2.3.1
-PKGREVISION= 6
+PKGREVISION= 7
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mpqc/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index d4df8cdfe05..fe54517afc1 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.24 2016/07/09 06:37:51 wiz Exp $
+# $NetBSD: Makefile,v 1.25 2018/08/22 09:42:59 wiz Exp $
#
DISTNAME= MUMmer3.20
PKGNAME= mummer-3.20
-PKGREVISION= 5
+PKGREVISION= 6
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/}
diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile
index b7b821b7c7a..0a2ee77d838 100644
--- a/biology/p5-Bio-ASN1-EntrezGene/Makefile
+++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile
@@ -1,7 +1,8 @@
-# $NetBSD: Makefile,v 1.6 2017/09/17 07:51:04 wiz Exp $
+# $NetBSD: Makefile,v 1.7 2018/08/22 09:42:59 wiz Exp $
DISTNAME= Bio-ASN1-EntrezGene-1.72
PKGNAME= p5-${DISTNAME}
+PKGREVISION= 1
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 3ea284938cf..acb712e98a9 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2018/05/07 18:37:31 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2018/08/22 09:42:59 wiz Exp $
DISTNAME= samtools-1.8
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
GITHUB_TAG= ${PKGVERSION_NOREV}