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| author | leot <leot@pkgsrc.org> | 2015-10-14 17:12:52 +0000 |
|---|---|---|
| committer | leot <leot@pkgsrc.org> | 2015-10-14 17:12:52 +0000 |
| commit | c9c64af079a7c742492b90399ae88b78a632888e (patch) | |
| tree | 50bcdaddb335973a581dfb8e494ec75078b593c8 /biology | |
| parent | 0b0a3ac8bcbf9abf2d99ea4fc3352b71344aac79 (diff) | |
| download | pkgsrc-c9c64af079a7c742492b90399ae88b78a632888e.tar.gz | |
Import biology/bwa as bwa-0.7.9a.
Packaged in pkgsrc-wip by Jason Bacon.
BWA is a software package for mapping low-divergent sequences against a large
reference genome, such as the human genome.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bwa/DESCR | 2 | ||||
| -rw-r--r-- | biology/bwa/Makefile | 28 | ||||
| -rw-r--r-- | biology/bwa/PLIST | 5 | ||||
| -rw-r--r-- | biology/bwa/distinfo | 5 |
4 files changed, 40 insertions, 0 deletions
diff --git a/biology/bwa/DESCR b/biology/bwa/DESCR new file mode 100644 index 00000000000..1a8e65be4a9 --- /dev/null +++ b/biology/bwa/DESCR @@ -0,0 +1,2 @@ +BWA is a software package for mapping low-divergent sequences against a large +reference genome, such as the human genome. diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile new file mode 100644 index 00000000000..bf9f30e8504 --- /dev/null +++ b/biology/bwa/Makefile @@ -0,0 +1,28 @@ +# $NetBSD: Makefile,v 1.1 2015/10/14 17:12:52 leot Exp $ +# +########################################################### +# Generated by fbsd2pkg # +########################################################### + +DISTNAME= bwa-0.7.9a +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bio-bwa/} +EXTRACT_SUFX= .tar.bz2 + +MAINTAINER= jwbacon@tds.net +HOMEPAGE= http://bio-bwa.sourceforge.net/ +COMMENT= Map low-divergent sequences against a large reference genome +LICENSE= gnu-gpl-v3 + +USE_TOOLS+= perl:run gmake +REPLACE_PERL= *.pl + +INSTALLATION_DIRS= bin ${PKGMANDIR}/man1 + +do-install: + ${INSTALL_PROGRAM} ${WRKSRC}/bwa ${DESTDIR}${PREFIX}/bin + ${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${DESTDIR}${PREFIX}/bin + ${INSTALL_MAN} ${WRKSRC}/*.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1 + +.include "../../devel/zlib/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/bwa/PLIST b/biology/bwa/PLIST new file mode 100644 index 00000000000..e218473248f --- /dev/null +++ b/biology/bwa/PLIST @@ -0,0 +1,5 @@ +@comment $NetBSD: PLIST,v 1.1 2015/10/14 17:12:52 leot Exp $ +bin/bwa +bin/qualfa2fq.pl +bin/xa2multi.pl +man/man1/bwa.1 diff --git a/biology/bwa/distinfo b/biology/bwa/distinfo new file mode 100644 index 00000000000..ed4e8824b4b --- /dev/null +++ b/biology/bwa/distinfo @@ -0,0 +1,5 @@ +$NetBSD: distinfo,v 1.1 2015/10/14 17:12:52 leot Exp $ + +SHA1 (bwa-0.7.9a.tar.bz2) = a77ce327e8acba554b1d27bfdd1c148f79726484 +RMD160 (bwa-0.7.9a.tar.bz2) = a51b7c686a206144eab2aee0a372d5ae46fcfce1 +Size (bwa-0.7.9a.tar.bz2) = 166193 bytes |