py-pydicom: Update to 1.3.0

From Eric A. Borisch in pull request NetBSD/pkgsrc#52.

3 files changed, 150 insertions, 138 deletions

diff --git a/biology/py-pydicom/Makefile b/biology/py-pydicom/Makefile
index f5650294ec1..8b9eec30f2d 100644
--- a/biology/py-pydicom/Makefile
+++ b/biology/py-pydicom/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.2 2018/12/05 10:09:09 bsiegert Exp $
+# $NetBSD: Makefile,v 1.3 2019/10/01 14:45:29 nia Exp $
 
-DISTNAME=	pydicom-1.2.1
+DISTNAME=	pydicom-1.3.0
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	biology python
 MASTER_SITES=	${MASTER_SITE_GITHUB:=pydicom/}
diff --git a/biology/py-pydicom/PLIST b/biology/py-pydicom/PLIST
index 79ee3f5051d..260298473f2 100644
--- a/biology/py-pydicom/PLIST
+++ b/biology/py-pydicom/PLIST
@@ -1,42 +1,27 @@
-@comment $NetBSD: PLIST,v 1.1 2018/10/31 20:15:40 leot Exp $
+@comment $NetBSD: PLIST,v 1.2 2019/10/01 14:45:29 nia Exp $
 ${PYSITELIB}/dicom.py
 ${PYSITELIB}/dicom.pyc
 ${PYSITELIB}/dicom.pyo
-${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
-${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt
 ${PYSITELIB}/${EGG_INFODIR}/not-zip-safe
+${PYSITELIB}/${EGG_INFODIR}/PKG-INFO
+${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt
 ${PYSITELIB}/${EGG_INFODIR}/top_level.txt
-${PYSITELIB}/pydicom/__init__.py
-${PYSITELIB}/pydicom/__init__.pyc
-${PYSITELIB}/pydicom/__init__.pyo
-${PYSITELIB}/pydicom/_dicom_dict.py
-${PYSITELIB}/pydicom/_dicom_dict.pyc
-${PYSITELIB}/pydicom/_dicom_dict.pyo
-${PYSITELIB}/pydicom/_private_dict.py
-${PYSITELIB}/pydicom/_private_dict.pyc
-${PYSITELIB}/pydicom/_private_dict.pyo
-${PYSITELIB}/pydicom/_storage_sopclass_uids.py
-${PYSITELIB}/pydicom/_storage_sopclass_uids.pyc
-${PYSITELIB}/pydicom/_storage_sopclass_uids.pyo
-${PYSITELIB}/pydicom/_uid_dict.py
-${PYSITELIB}/pydicom/_uid_dict.pyc
-${PYSITELIB}/pydicom/_uid_dict.pyo
-${PYSITELIB}/pydicom/_version.py
-${PYSITELIB}/pydicom/_version.pyc
-${PYSITELIB}/pydicom/_version.pyo
-${PYSITELIB}/pydicom/benchmarks/__init__.py
-${PYSITELIB}/pydicom/benchmarks/__init__.pyc
-${PYSITELIB}/pydicom/benchmarks/__init__.pyo
 ${PYSITELIB}/pydicom/benchmarks/bench_encaps.py
 ${PYSITELIB}/pydicom/benchmarks/bench_encaps.pyc
 ${PYSITELIB}/pydicom/benchmarks/bench_encaps.pyo
 ${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.py
 ${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.pyc
 ${PYSITELIB}/pydicom/benchmarks/bench_handler_numpy.pyo
-${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.py
-${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.pyc
-${PYSITELIB}/pydicom/benchmarks/bench_handler_rle.pyo
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_decode.py
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_decode.pyc
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_decode.pyo
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_encode.py
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_encode.pyc
+${PYSITELIB}/pydicom/benchmarks/bench_handler_rle_encode.pyo
+${PYSITELIB}/pydicom/benchmarks/__init__.py
+${PYSITELIB}/pydicom/benchmarks/__init__.pyc
+${PYSITELIB}/pydicom/benchmarks/__init__.pyo
 ${PYSITELIB}/pydicom/charset.py
 ${PYSITELIB}/pydicom/charset.pyc
 ${PYSITELIB}/pydicom/charset.pyo
@@ -46,13 +31,6 @@ ${PYSITELIB}/pydicom/compat.pyo
 ${PYSITELIB}/pydicom/config.py
 ${PYSITELIB}/pydicom/config.pyc
 ${PYSITELIB}/pydicom/config.pyo
-${PYSITELIB}/pydicom/data/__init__.py
-${PYSITELIB}/pydicom/data/__init__.pyc
-${PYSITELIB}/pydicom/data/__init__.pyo
-${PYSITELIB}/pydicom/data/charset_files/FileInfo.txt
-${PYSITELIB}/pydicom/data/charset_files/__init__.py
-${PYSITELIB}/pydicom/data/charset_files/__init__.pyc
-${PYSITELIB}/pydicom/data/charset_files/__init__.pyo
 ${PYSITELIB}/pydicom/data/charset_files/charlist.py
 ${PYSITELIB}/pydicom/data/charset_files/charlist.pyc
 ${PYSITELIB}/pydicom/data/charset_files/charlist.pyo
@@ -69,80 +47,34 @@ ${PYSITELIB}/pydicom/data/charset_files/chrJapMulti.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrJapMultiExplicitIR6.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrKoreanMulti.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrRuss.dcm
-${PYSITELIB}/pydicom/data/charset_files/chrSQEncoding.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrSQEncoding1.dcm
+${PYSITELIB}/pydicom/data/charset_files/chrSQEncoding.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrX1.dcm
 ${PYSITELIB}/pydicom/data/charset_files/chrX2.dcm
+${PYSITELIB}/pydicom/data/charset_files/FileInfo.txt
+${PYSITELIB}/pydicom/data/charset_files/__init__.py
+${PYSITELIB}/pydicom/data/charset_files/__init__.pyc
+${PYSITELIB}/pydicom/data/charset_files/__init__.pyo
 ${PYSITELIB}/pydicom/data/data_manager.py
 ${PYSITELIB}/pydicom/data/data_manager.pyc
 ${PYSITELIB}/pydicom/data/data_manager.pyo
-${PYSITELIB}/pydicom/data/test_files/CT_small.dcm
-${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEnd.dcm
-${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEndNoMeta.dcm
-${PYSITELIB}/pydicom/data/test_files/ExplVR_LitEndNoMeta.dcm
-${PYSITELIB}/pydicom/data/test_files/JPEG-LL.dcm
-${PYSITELIB}/pydicom/data/test_files/JPEG-lossy.dcm
-${PYSITELIB}/pydicom/data/test_files/JPEG2000.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_RLE.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_bigendian.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_expb.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_implicit.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_jp2klossless.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_small_jpeg_ls_lossless.dcm
-${PYSITELIB}/pydicom/data/test_files/MR_truncated.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle.dcm
-${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/OT-PAL-8-face.dcm
-${PYSITELIB}/pydicom/data/test_files/README.txt
-${PYSITELIB}/pydicom/data/test_files/SC_rgb.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cr.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n1.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n2.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+np.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s2.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s4.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcr_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn1_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn2_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcynp_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys2_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys4_dcmd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm2k_uncompressed.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm_KY.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_dcmtk.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_gdcm.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_lossy_gdcm.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit_2frame.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd.dcm
-${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd_jpeg.dcm
-${PYSITELIB}/pydicom/data/test_files/__init__.py
-${PYSITELIB}/pydicom/data/test_files/__init__.pyc
-${PYSITELIB}/pydicom/data/test_files/__init__.pyo
+${PYSITELIB}/pydicom/datadict.py
+${PYSITELIB}/pydicom/datadict.pyc
+${PYSITELIB}/pydicom/datadict.pyo
+${PYSITELIB}/pydicom/dataelem.py
+${PYSITELIB}/pydicom/dataelem.pyc
+${PYSITELIB}/pydicom/dataelem.pyo
+${PYSITELIB}/pydicom/data/__init__.py
+${PYSITELIB}/pydicom/data/__init__.pyc
+${PYSITELIB}/pydicom/data/__init__.pyo
+${PYSITELIB}/pydicom/dataset.py
+${PYSITELIB}/pydicom/dataset.pyc
+${PYSITELIB}/pydicom/dataset.pyo
 ${PYSITELIB}/pydicom/data/test_files/badVR.dcm
+${PYSITELIB}/pydicom/data/test_files/color3d_jpeg_baseline.dcm
 ${PYSITELIB}/pydicom/data/test_files/color-pl.dcm
 ${PYSITELIB}/pydicom/data/test_files/color-px.dcm
-${PYSITELIB}/pydicom/data/test_files/color3d_jpeg_baseline.dcm
+${PYSITELIB}/pydicom/data/test_files/CT_small.dcm
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/77654033/CR1/6154
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/77654033/CR2/6247
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/77654033/CR3/6278
@@ -175,37 +107,102 @@ ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/98892003/MR700/4618
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/98892003/MR700/4648
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/98892003/MR700/4678
 ${PYSITELIB}/pydicom/data/test_files/dicomdirtests/DICOMDIR
-${PYSITELIB}/pydicom/data/test_files/emri_small.dcm
-${PYSITELIB}/pydicom/data/test_files/emri_small_RLE.dcm
 ${PYSITELIB}/pydicom/data/test_files/emri_small_big_endian.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small.dcm
 ${PYSITELIB}/pydicom/data/test_files/emri_small_jpeg_2k_lossless.dcm
 ${PYSITELIB}/pydicom/data/test_files/emri_small_jpeg_ls_lossless.dcm
+${PYSITELIB}/pydicom/data/test_files/emri_small_RLE.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEnd.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_BigEndNoMeta.dcm
+${PYSITELIB}/pydicom/data/test_files/ExplVR_LitEndNoMeta.dcm
 ${PYSITELIB}/pydicom/data/test_files/image_dfl.dcm
-${PYSITELIB}/pydicom/data/test_files/liver.dcm
+${PYSITELIB}/pydicom/data/test_files/__init__.py
+${PYSITELIB}/pydicom/data/test_files/__init__.pyc
+${PYSITELIB}/pydicom/data/test_files/__init__.pyo
+${PYSITELIB}/pydicom/data/test_files/JPEG2000.dcm
+${PYSITELIB}/pydicom/data/test_files/JPEG-LL.dcm
+${PYSITELIB}/pydicom/data/test_files/JPEG-lossy.dcm
 ${PYSITELIB}/pydicom/data/test_files/liver_1frame.dcm
-${PYSITELIB}/pydicom/data/test_files/liver_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/liver.dcm
 ${PYSITELIB}/pydicom/data/test_files/liver_expb_1frame.dcm
+${PYSITELIB}/pydicom/data/test_files/liver_expb.dcm
 ${PYSITELIB}/pydicom/data/test_files/meta_missing_tsyntax.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_bigendian.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_implicit.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_jp2klossless.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_jpeg_ls_lossless.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_padded.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_small_RLE.dcm
+${PYSITELIB}/pydicom/data/test_files/MR_truncated.dcm
 ${PYSITELIB}/pydicom/data/test_files/nested_priv_SQ.dcm
 ${PYSITELIB}/pydicom/data/test_files/no_meta_group_length.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/OBXXXX1A_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/OT-PAL-8-face.dcm
 ${PYSITELIB}/pydicom/data/test_files/priv_SQ.dcm
+${PYSITELIB}/pydicom/data/test_files/README.txt
 ${PYSITELIB}/pydicom/data/test_files/reportsi.dcm
 ${PYSITELIB}/pydicom/data/test_files/reportsi_with_empty_number_tags.dcm
-${PYSITELIB}/pydicom/data/test_files/rtdose.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtdose_1frame.dcm
-${PYSITELIB}/pydicom/data/test_files/rtdose_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/rtdose.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtdose_expb_1frame.dcm
-${PYSITELIB}/pydicom/data/test_files/rtdose_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/rtdose_expb.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtdose_rle_1frame.dcm
+${PYSITELIB}/pydicom/data/test_files/rtdose_rle.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtplan.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtplan.dump
 ${PYSITELIB}/pydicom/data/test_files/rtplan_truncated.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtstruct.dcm
 ${PYSITELIB}/pydicom/data/test_files/rtstruct.dump
-${PYSITELIB}/pydicom/data/test_files/test-SR.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cr.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcr_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n1.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn1_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+n2.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcyn2_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+np.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcynp_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s2.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys2_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_+eb+cy+s4.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_dcmtk_ebcys4_dcmd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_expb.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm2k_uncompressed.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_gdcm_KY.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_dcmtk.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_gdcm.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_jpeg_lossy_gdcm.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_16bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit_2frame.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle_32bit.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_rle.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd.dcm
+${PYSITELIB}/pydicom/data/test_files/SC_rgb_small_odd_jpeg.dcm
+${PYSITELIB}/pydicom/data/test_files/test1.json
+${PYSITELIB}/pydicom/data/test_files/test_PN.json
 ${PYSITELIB}/pydicom/data/test_files/test.py
 ${PYSITELIB}/pydicom/data/test_files/test.pyc
 ${PYSITELIB}/pydicom/data/test_files/test.pyo
+${PYSITELIB}/pydicom/data/test_files/test-SR.dcm
 ${PYSITELIB}/pydicom/data/test_files/zipMR.gz
 ${PYSITELIB}/pydicom/data/tests/__init__.py
 ${PYSITELIB}/pydicom/data/tests/__init__.pyc
@@ -213,15 +210,9 @@ ${PYSITELIB}/pydicom/data/tests/__init__.pyo
 ${PYSITELIB}/pydicom/data/tests/test_data_manager.py
 ${PYSITELIB}/pydicom/data/tests/test_data_manager.pyc
 ${PYSITELIB}/pydicom/data/tests/test_data_manager.pyo
-${PYSITELIB}/pydicom/datadict.py
-${PYSITELIB}/pydicom/datadict.pyc
-${PYSITELIB}/pydicom/datadict.pyo
-${PYSITELIB}/pydicom/dataelem.py
-${PYSITELIB}/pydicom/dataelem.pyc
-${PYSITELIB}/pydicom/dataelem.pyo
-${PYSITELIB}/pydicom/dataset.py
-${PYSITELIB}/pydicom/dataset.pyc
-${PYSITELIB}/pydicom/dataset.pyo
+${PYSITELIB}/pydicom/_dicom_dict.py
+${PYSITELIB}/pydicom/_dicom_dict.pyc
+${PYSITELIB}/pydicom/_dicom_dict.pyo
 ${PYSITELIB}/pydicom/dicomdir.py
 ${PYSITELIB}/pydicom/dicomdir.pyc
 ${PYSITELIB}/pydicom/dicomdir.pyo
@@ -246,18 +237,24 @@ ${PYSITELIB}/pydicom/fileutil.pyo
 ${PYSITELIB}/pydicom/filewriter.py
 ${PYSITELIB}/pydicom/filewriter.pyc
 ${PYSITELIB}/pydicom/filewriter.pyo
+${PYSITELIB}/pydicom/__init__.py
+${PYSITELIB}/pydicom/__init__.pyc
+${PYSITELIB}/pydicom/__init__.pyo
+${PYSITELIB}/pydicom/jsonrep.py
+${PYSITELIB}/pydicom/jsonrep.pyc
+${PYSITELIB}/pydicom/jsonrep.pyo
 ${PYSITELIB}/pydicom/misc.py
 ${PYSITELIB}/pydicom/misc.pyc
 ${PYSITELIB}/pydicom/misc.pyo
 ${PYSITELIB}/pydicom/multival.py
 ${PYSITELIB}/pydicom/multival.pyc
 ${PYSITELIB}/pydicom/multival.pyo
-${PYSITELIB}/pydicom/pixel_data_handlers/__init__.py
-${PYSITELIB}/pydicom/pixel_data_handlers/__init__.pyc
-${PYSITELIB}/pydicom/pixel_data_handlers/__init__.pyo
 ${PYSITELIB}/pydicom/pixel_data_handlers/gdcm_handler.py
 ${PYSITELIB}/pydicom/pixel_data_handlers/gdcm_handler.pyc
 ${PYSITELIB}/pydicom/pixel_data_handlers/gdcm_handler.pyo
+${PYSITELIB}/pydicom/pixel_data_handlers/__init__.py
+${PYSITELIB}/pydicom/pixel_data_handlers/__init__.pyc
+${PYSITELIB}/pydicom/pixel_data_handlers/__init__.pyo
 ${PYSITELIB}/pydicom/pixel_data_handlers/jpeg_ls_handler.py
 ${PYSITELIB}/pydicom/pixel_data_handlers/jpeg_ls_handler.pyc
 ${PYSITELIB}/pydicom/pixel_data_handlers/jpeg_ls_handler.pyo
@@ -273,21 +270,24 @@ ${PYSITELIB}/pydicom/pixel_data_handlers/rle_handler.pyo
 ${PYSITELIB}/pydicom/pixel_data_handlers/util.py
 ${PYSITELIB}/pydicom/pixel_data_handlers/util.pyc
 ${PYSITELIB}/pydicom/pixel_data_handlers/util.pyo
+${PYSITELIB}/pydicom/_private_dict.py
+${PYSITELIB}/pydicom/_private_dict.pyc
+${PYSITELIB}/pydicom/_private_dict.pyo
 ${PYSITELIB}/pydicom/sequence.py
 ${PYSITELIB}/pydicom/sequence.pyc
 ${PYSITELIB}/pydicom/sequence.pyo
+${PYSITELIB}/pydicom/_storage_sopclass_uids.py
+${PYSITELIB}/pydicom/_storage_sopclass_uids.pyc
+${PYSITELIB}/pydicom/_storage_sopclass_uids.pyo
 ${PYSITELIB}/pydicom/tag.py
 ${PYSITELIB}/pydicom/tag.pyc
 ${PYSITELIB}/pydicom/tag.pyo
-${PYSITELIB}/pydicom/tests/__init__.py
-${PYSITELIB}/pydicom/tests/__init__.pyc
-${PYSITELIB}/pydicom/tests/__init__.pyo
 ${PYSITELIB}/pydicom/tests/_handler_common.py
 ${PYSITELIB}/pydicom/tests/_handler_common.pyc
 ${PYSITELIB}/pydicom/tests/_handler_common.pyo
-${PYSITELIB}/pydicom/tests/_write_stds.py
-${PYSITELIB}/pydicom/tests/_write_stds.pyc
-${PYSITELIB}/pydicom/tests/_write_stds.pyo
+${PYSITELIB}/pydicom/tests/__init__.py
+${PYSITELIB}/pydicom/tests/__init__.pyc
+${PYSITELIB}/pydicom/tests/__init__.pyo
 ${PYSITELIB}/pydicom/tests/performance/__init__.py
 ${PYSITELIB}/pydicom/tests/performance/__init__.pyc
 ${PYSITELIB}/pydicom/tests/performance/__init__.pyo
@@ -300,9 +300,6 @@ ${PYSITELIB}/pydicom/tests/performance/time_test.pyo
 ${PYSITELIB}/pydicom/tests/performance/write_profiling.py
 ${PYSITELIB}/pydicom/tests/performance/write_profiling.pyc
 ${PYSITELIB}/pydicom/tests/performance/write_profiling.pyo
-${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.py
-${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.pyc
-${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.pyo
 ${PYSITELIB}/pydicom/tests/test_charset.py
 ${PYSITELIB}/pydicom/tests/test_charset.pyc
 ${PYSITELIB}/pydicom/tests/test_charset.pyo
@@ -351,6 +348,12 @@ ${PYSITELIB}/pydicom/tests/test_handler_util.pyo
 ${PYSITELIB}/pydicom/tests/test_jpeg_ls_pixel_data.py
 ${PYSITELIB}/pydicom/tests/test_jpeg_ls_pixel_data.pyc
 ${PYSITELIB}/pydicom/tests/test_jpeg_ls_pixel_data.pyo
+${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.py
+${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.pyc
+${PYSITELIB}/pydicom/tests/test_JPEG_LS_transfer_syntax.pyo
+${PYSITELIB}/pydicom/tests/test_json.py
+${PYSITELIB}/pydicom/tests/test_json.pyc
+${PYSITELIB}/pydicom/tests/test_json.pyo
 ${PYSITELIB}/pydicom/tests/test_misc.py
 ${PYSITELIB}/pydicom/tests/test_misc.pyc
 ${PYSITELIB}/pydicom/tests/test_misc.pyo
@@ -390,12 +393,15 @@ ${PYSITELIB}/pydicom/tests/test_valuerep.pyo
 ${PYSITELIB}/pydicom/tests/test_values.py
 ${PYSITELIB}/pydicom/tests/test_values.pyc
 ${PYSITELIB}/pydicom/tests/test_values.pyo
+${PYSITELIB}/pydicom/tests/_write_stds.py
+${PYSITELIB}/pydicom/tests/_write_stds.pyc
+${PYSITELIB}/pydicom/tests/_write_stds.pyo
+${PYSITELIB}/pydicom/_uid_dict.py
+${PYSITELIB}/pydicom/_uid_dict.pyc
+${PYSITELIB}/pydicom/_uid_dict.pyo
 ${PYSITELIB}/pydicom/uid.py
 ${PYSITELIB}/pydicom/uid.pyc
 ${PYSITELIB}/pydicom/uid.pyo
-${PYSITELIB}/pydicom/util/__init__.py
-${PYSITELIB}/pydicom/util/__init__.pyc
-${PYSITELIB}/pydicom/util/__init__.pyo
 ${PYSITELIB}/pydicom/util/codify.py
 ${PYSITELIB}/pydicom/util/codify.pyc
 ${PYSITELIB}/pydicom/util/codify.pyo
@@ -411,6 +417,9 @@ ${PYSITELIB}/pydicom/util/fixes.pyo
 ${PYSITELIB}/pydicom/util/hexutil.py
 ${PYSITELIB}/pydicom/util/hexutil.pyc
 ${PYSITELIB}/pydicom/util/hexutil.pyo
+${PYSITELIB}/pydicom/util/__init__.py
+${PYSITELIB}/pydicom/util/__init__.pyc
+${PYSITELIB}/pydicom/util/__init__.pyo
 ${PYSITELIB}/pydicom/util/leanread.py
 ${PYSITELIB}/pydicom/util/leanread.pyc
 ${PYSITELIB}/pydicom/util/leanread.pyo
@@ -420,5 +429,8 @@ ${PYSITELIB}/pydicom/valuerep.pyo
 ${PYSITELIB}/pydicom/values.py
 ${PYSITELIB}/pydicom/values.pyc
 ${PYSITELIB}/pydicom/values.pyo
+${PYSITELIB}/pydicom/_version.py
+${PYSITELIB}/pydicom/_version.pyc
+${PYSITELIB}/pydicom/_version.pyo
 ${DOCDIR}/LICENSE
 ${DOCDIR}/README.md
diff --git a/biology/py-pydicom/distinfo b/biology/py-pydicom/distinfo
index de81de001ba..f96c1e7f825 100644
--- a/biology/py-pydicom/distinfo
+++ b/biology/py-pydicom/distinfo
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.2 2018/12/05 10:09:09 bsiegert Exp $
+$NetBSD: distinfo,v 1.3 2019/10/01 14:45:29 nia Exp $
 
-SHA1 (pydicom-1.2.1.tar.gz) = 5601d4b4e510d242cbd56fdb40b7628f3aa2f0bb
-RMD160 (pydicom-1.2.1.tar.gz) = b02f15e8c6d4f09aed8867b4e3ac562b78cc5a83
-SHA512 (pydicom-1.2.1.tar.gz) = 1996b70e37ade23db912a53cc8cb51ca700fc3cf40a12410f14119633b1aa13bfaf2ed2d4a68b1d920fea7853070be8f1589911cbc0f5968fd473d7781659ed7
-Size (pydicom-1.2.1.tar.gz) = 7041066 bytes
+SHA1 (pydicom-1.3.0.tar.gz) = 8fdc0d10559cb59ecc23e7d3e6edc94d95d6fb3b
+RMD160 (pydicom-1.3.0.tar.gz) = 86a76c5ab554609ae0831bbfcf078df38a5fbca3
+SHA512 (pydicom-1.3.0.tar.gz) = bff4925ed77aae812a507c1501db0772964f1d76637f7eaf1b978bbcf080e2fff6f15f4a35c14b4828913114817c76a6d79df8e94c3c2f6a173949d8a084dc63
+Size (pydicom-1.3.0.tar.gz) = 7070424 bytes