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authormaya <maya@pkgsrc.org>2019-04-25 07:32:34 +0000
committermaya <maya@pkgsrc.org>2019-04-25 07:32:34 +0000
commit3d4f4b52d921d81c07e9bd63bfeafa757f969cc0 (patch)
treea416928cc701450ae75c0a43468ba9fa9f48c674 /biology
parenta4189552bb92eb40213147fa310cbb2e027a33fb (diff)
downloadpkgsrc-3d4f4b52d921d81c07e9bd63bfeafa757f969cc0.tar.gz
PKGREVISION bump for anything using python without a PYPKGPREFIX.
This is a semi-manual PKGREVISION bump.
Diffstat (limited to 'biology')
-rw-r--r--biology/bcftools/Makefile3
-rw-r--r--biology/hisat2/Makefile3
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/samtools/Makefile3
-rw-r--r--biology/stacks/Makefile3
5 files changed, 10 insertions, 6 deletions
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index 418f6e74ba5..45d28c0a38c 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.2 2019/03/27 15:58:38 bacon Exp $
+# $NetBSD: Makefile,v 1.3 2019/04/25 07:32:37 maya Exp $
DISTNAME= bcftools-1.9
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile
index 0dd8c1c8ebd..a1fea15b3d3 100644
--- a/biology/hisat2/Makefile
+++ b/biology/hisat2/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2019/01/15 01:26:29 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2019/04/25 07:32:37 maya Exp $
DISTNAME= hisat2-2.1.0.23
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=infphilo/}
GITHUB_TAG= 20f333e2cfe7ff4d1362b248912893e2644683d7
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 9a274645e70..19b4a5ae511 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.7 2019/04/03 00:32:26 ryoon Exp $
+# $NetBSD: Makefile,v 1.8 2019/04/25 07:32:37 maya Exp $
DISTNAME= ncbi-blast-2.8.1+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 92ae6e4c77e..d82a860333a 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.4 2019/03/27 20:47:36 bacon Exp $
+# $NetBSD: Makefile,v 1.5 2019/04/25 07:32:37 maya Exp $
DISTNAME= samtools-1.9
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile
index ed32c60154f..6ddb4192131 100644
--- a/biology/stacks/Makefile
+++ b/biology/stacks/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.1 2018/12/22 21:52:06 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2019/04/25 07:32:37 maya Exp $
DISTNAME= stacks-2.2
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/