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| author | wiz <wiz@pkgsrc.org> | 2020-07-30 07:59:19 +0000 |
|---|---|---|
| committer | wiz <wiz@pkgsrc.org> | 2020-07-30 07:59:19 +0000 |
| commit | b24799d3511446f35d996d27f2c57888405d0e05 (patch) | |
| tree | 2ca17328ef5938f860cafd2243cec9f8aa053eb5 /biology | |
| parent | 65c810ae8e2bc9c511a7114396fa9184f83d9393 (diff) | |
| download | pkgsrc-b24799d3511446f35d996d27f2c57888405d0e05.tar.gz | |
kallisto: remove patches that were removed from distinfo during update
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/kallisto/patches/patch-CMakeLists.txt | 28 | ||||
| -rw-r--r-- | biology/kallisto/patches/patch-src_CMakeLists.txt | 30 |
2 files changed, 0 insertions, 58 deletions
diff --git a/biology/kallisto/patches/patch-CMakeLists.txt b/biology/kallisto/patches/patch-CMakeLists.txt deleted file mode 100644 index 0bd8d403ca5..00000000000 --- a/biology/kallisto/patches/patch-CMakeLists.txt +++ /dev/null @@ -1,28 +0,0 @@ -$NetBSD: patch-CMakeLists.txt,v 1.1 2018/12/21 19:00:56 bacon Exp $ - -# Unbundle htslib - ---- CMakeLists.txt.orig 2018-12-19 17:13:04.000000000 +0000 -+++ CMakeLists.txt -@@ -35,21 +35,6 @@ ELSE(LINK MATCHES shared) - ENDIF(LINK MATCHES static) - - --include(ExternalProject) --ExternalProject_Add(htslib -- PREFIX ${PROJECT_SOURCE_DIR}/ext/htslib -- SOURCE_DIR ${PROJECT_SOURCE_DIR}/ext/htslib -- BUILD_IN_SOURCE 1 -- CONFIGURE_COMMAND autoheader && autoconf && ${PROJECT_SOURCE_DIR}/ext/htslib/configure -- --prefix=${PREFIX} --disable-bz2 --disable-lzma --disable-libcurl -- BUILD_COMMAND make lib-static -- INSTALL_COMMAND "" --) -- --include_directories(${htslib_PREFIX}/src/htslib) -- -- -- - # add_compile_options(-Wdeprecated-register) - - add_subdirectory(src) diff --git a/biology/kallisto/patches/patch-src_CMakeLists.txt b/biology/kallisto/patches/patch-src_CMakeLists.txt deleted file mode 100644 index bbc8df4a798..00000000000 --- a/biology/kallisto/patches/patch-src_CMakeLists.txt +++ /dev/null @@ -1,30 +0,0 @@ -$NetBSD: patch-src_CMakeLists.txt,v 1.1 2018/12/21 19:00:56 bacon Exp $ - -# Unbundle htslib - ---- src/CMakeLists.txt.orig 2018-10-17 23:58:22 UTC -+++ src/CMakeLists.txt -@@ -3,15 +3,13 @@ file(GLOB headers *.h *.hpp) - - list(REMOVE_ITEM sources main.cpp) - --include_directories(../ext/htslib) -- - add_library(kallisto_core ${sources} ${headers}) - target_include_directories(kallisto_core PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}) - - add_executable(kallisto main.cpp) - - find_package( Threads REQUIRED ) --target_link_libraries(kallisto kallisto_core pthread ${CMAKE_CURRENT_SOURCE_DIR}/../ext/htslib/libhts.a) -+target_link_libraries(kallisto kallisto_core pthread hts) - - if(LINK MATCHES static) - set(BUILD_SHARED_LIBS OFF) -@@ -56,4 +54,4 @@ else() - endif(LINK MATCHES static) - - --install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}") -\ No newline at end of file -+install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}") |