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authorrillig <rillig@pkgsrc.org>2020-01-26 17:30:40 +0000
committerrillig <rillig@pkgsrc.org>2020-01-26 17:30:40 +0000
commit0267807f87c64f31dfd0e699ddbab19e55e61df4 (patch)
treed0a3f84c95c120b8b0804700a18681e739dece61 /biology
parent8d627c555cb4fdc633e2d2ab8056558c863ea6da (diff)
downloadpkgsrc-0267807f87c64f31dfd0e699ddbab19e55e61df4.tar.gz
all: migrate homepages from http to https
pkglint -r --network --only "migrate" As a side-effect of migrating the homepages, pkglint also fixed a few indentations in unrelated lines. These and the new homepages have been checked manually.
Diffstat (limited to 'biology')
-rw-r--r--biology/arka/Makefile4
-rw-r--r--biology/gp/Makefile4
-rw-r--r--biology/htslib/Makefile4
-rw-r--r--biology/py-biopython/Makefile4
-rw-r--r--biology/samtools/Makefile4
-rw-r--r--biology/xylem/Makefile4
6 files changed, 12 insertions, 12 deletions
diff --git a/biology/arka/Makefile b/biology/arka/Makefile
index 85b645e6063..0d4c840c845 100644
--- a/biology/arka/Makefile
+++ b/biology/arka/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.13 2012/09/11 20:32:10 asau Exp $
+# $NetBSD: Makefile,v 1.14 2020/01/26 17:30:46 rillig Exp $
#
DISTNAME= arka-0.11
@@ -8,7 +8,7 @@ MASTER_SITES= http://www.bioinformatics.org/genpak/download/
EXTRACT_SUFX= .tgz
MAINTAINER= hdp@cs.nmsu.edu
-HOMEPAGE= http://www.bioinformatics.org/genpak/
+HOMEPAGE= https://www.bioinformatics.org/genpak/
COMMENT= Graphic interface for the programs from the GP package
DEPENDS+= gp-[0-9]*:../../biology/gp
diff --git a/biology/gp/Makefile b/biology/gp/Makefile
index 0f43601c1f3..f92f098a6ff 100644
--- a/biology/gp/Makefile
+++ b/biology/gp/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.8 2012/09/11 20:32:12 asau Exp $
+# $NetBSD: Makefile,v 1.9 2020/01/26 17:30:46 rillig Exp $
#
DISTNAME= gp-0.26
@@ -7,7 +7,7 @@ MASTER_SITES= http://www.bioinformatics.org/genpak/download/
EXTRACT_SUFX= .tgz
MAINTAINER= hdp@cs.nmsu.edu
-HOMEPAGE= http://www.bioinformatics.org/genpak/
+HOMEPAGE= https://www.bioinformatics.org/genpak/
COMMENT= Manipulate DNA/RNA sequence in a Unix fashion
INSTALLATION_DIRS= bin ${PKGMANDIR}/man1 share/examples
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index b00a0f39b5e..e02e1f2e45d 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.11 2020/01/18 21:48:47 jperkin Exp $
+# $NetBSD: Makefile,v 1.12 2020/01/26 17:30:46 rillig Exp $
DISTNAME= htslib-1.9
PKGREVISION= 7
@@ -8,7 +8,7 @@ EXTRACT_SUFX= .tar.bz2
GITHUB_RELEASE= ${PKGVERSION_NOREV}
MAINTAINER= bacon@NetBSD.org
-HOMEPAGE= http://www.htslib.org/
+HOMEPAGE= https://www.htslib.org/
COMMENT= C library for high-throughput sequencing data formats
LICENSE= mit
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile
index 90692ad6973..6b6a452e5f6 100644
--- a/biology/py-biopython/Makefile
+++ b/biology/py-biopython/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.2 2019/08/14 18:12:00 brook Exp $
+# $NetBSD: Makefile,v 1.3 2020/01/26 17:30:46 rillig Exp $
DISTNAME= biopython-1.74
PKGNAME= ${PYPKGPREFIX}-${DISTNAME}
@@ -6,7 +6,7 @@ CATEGORIES= biology
MASTER_SITES= http://biopython.org/DIST/
MAINTAINER= pkgsrc-users@NetBSD.org
-HOMEPAGE= http://biopython.org/
+HOMEPAGE= https://biopython.org/
COMMENT= Python libraries for computational molecular biology
LICENSE= biopython
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index b6cdf658fb9..5ea403b6591 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.6 2019/08/11 13:18:01 wiz Exp $
+# $NetBSD: Makefile,v 1.7 2020/01/26 17:30:46 rillig Exp $
DISTNAME= samtools-1.9
PKGREVISION= 2
@@ -8,7 +8,7 @@ EXTRACT_SUFX= .tar.bz2
GITHUB_RELEASE= ${PKGVERSION_NOREV}
MAINTAINER= bacon@NetBSD.org
-HOMEPAGE= http://www.htslib.org/
+HOMEPAGE= https://www.htslib.org/
COMMENT= Tools for manipulating next-generation sequencing data
LICENSE= mit
diff --git a/biology/xylem/Makefile b/biology/xylem/Makefile
index 4ba7c051637..da1ec8cfb86 100644
--- a/biology/xylem/Makefile
+++ b/biology/xylem/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.11 2013/04/06 13:24:18 rodent Exp $
+# $NetBSD: Makefile,v 1.12 2020/01/26 17:30:47 rillig Exp $
#
DISTNAME= xylem.1.8.7
@@ -8,7 +8,7 @@ MASTER_SITES= ftp://ftp.cc.umanitoba.ca/psgendb/
EXTRACT_SUFX= .tar.Z
MAINTAINER= hdp@cs.nmsu.edu
-HOMEPAGE= http://home.cc.umanitoba.ca/~psgendb/XYLEM.html
+HOMEPAGE= https://home.cc.umanitoba.ca/~psgendb/XYLEM.html
COMMENT= Tools for manipulation of genetic databases
MAKE_JOBS_SAFE= no