diff options
| author | bacon <bacon@pkgsrc.org> | 2021-03-24 18:19:21 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-03-24 18:19:21 +0000 |
| commit | 7eb483a112b09a7aa8fe82172d467db40c1ec734 (patch) | |
| tree | ffc43603697a028a11b0915500d1f41a258d5871 /biology | |
| parent | d2e51b102de9338e75c2fffa730c8fc66265bb93 (diff) | |
| download | pkgsrc-7eb483a112b09a7aa8fe82172d467db40c1ec734.tar.gz | |
biology/ad2vcf: import ad2vcf-0.1.2
ad2vdf extracts allelic depth info from a SAM stream and adds it to a
corresponding single-sample VCF file.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/ad2vcf/DESCR | 2 | ||||
| -rw-r--r-- | biology/ad2vcf/Makefile | 19 | ||||
| -rw-r--r-- | biology/ad2vcf/PLIST | 3 | ||||
| -rw-r--r-- | biology/ad2vcf/distinfo | 6 |
4 files changed, 30 insertions, 0 deletions
diff --git a/biology/ad2vcf/DESCR b/biology/ad2vcf/DESCR new file mode 100644 index 00000000000..3a5387e3481 --- /dev/null +++ b/biology/ad2vcf/DESCR @@ -0,0 +1,2 @@ +ad2vdf extracts allelic depth info from a SAM stream and adds it to a +corresponding single-sample VCF file. diff --git a/biology/ad2vcf/Makefile b/biology/ad2vcf/Makefile new file mode 100644 index 00000000000..91fc5341964 --- /dev/null +++ b/biology/ad2vcf/Makefile @@ -0,0 +1,19 @@ +# $NetBSD: Makefile,v 1.1 2021/03/24 18:19:21 bacon Exp $ + +DISTNAME= ad2vcf-0.1.2 +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://github.com/auerlab/ad2vcf +COMMENT= Add allelic depth info from a SAM stream to a VCF file +LICENSE= 2-clause-bsd + +pre-build: + cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend + +do-test: + cd ${WRKSRC}/Test && ./run-test.sh + +.include "../../biology/biolibc/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/ad2vcf/PLIST b/biology/ad2vcf/PLIST new file mode 100644 index 00000000000..6a684679113 --- /dev/null +++ b/biology/ad2vcf/PLIST @@ -0,0 +1,3 @@ +@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:19:21 bacon Exp $ +bin/ad2vcf +man/man1/ad2vcf.1 diff --git a/biology/ad2vcf/distinfo b/biology/ad2vcf/distinfo new file mode 100644 index 00000000000..f01dc22eb25 --- /dev/null +++ b/biology/ad2vcf/distinfo @@ -0,0 +1,6 @@ +$NetBSD: distinfo,v 1.1 2021/03/24 18:19:21 bacon Exp $ + +SHA1 (ad2vcf-0.1.2.tar.gz) = 15e8e90122003d2bc83542414ba65e4fa40182ae +RMD160 (ad2vcf-0.1.2.tar.gz) = 7e98382c79935f46ae259bd879b499966a470cb7 +SHA512 (ad2vcf-0.1.2.tar.gz) = 64db184331207b00659909af219deb9dc352fad64f066e29fc7fabc28f3a60a9209319e589999cdb66551f267d1405d5be6f221c0147da33b4d924e87bec4ad3 +Size (ad2vcf-0.1.2.tar.gz) = 15204 bytes |