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authorhe <he@pkgsrc.org>2017-12-27 23:44:01 +0000
committerhe <he@pkgsrc.org>2017-12-27 23:44:01 +0000
commit8bb201f4dd08de8d7a6fd690b9c0ef5686a7c0f9 (patch)
tree76c43d4906d1edd3cd4620aa4e08099b6b8ff4f4 /biology
parentd89091d505574916e3ff32915df7d684bf90bd69 (diff)
downloadpkgsrc-8bb201f4dd08de8d7a6fd690b9c0ef5686a7c0f9.tar.gz
Re-add patch to bring timeval definition and select prototype into scope.
Bump PKGREVISION.
Diffstat (limited to 'biology')
-rw-r--r--biology/bwa/Makefile3
-rw-r--r--biology/bwa/distinfo3
-rw-r--r--biology/bwa/patches/patch-kopen.c15
3 files changed, 19 insertions, 2 deletions
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
index 05a6870f52b..b382e4a148d 100644
--- a/biology/bwa/Makefile
+++ b/biology/bwa/Makefile
@@ -1,7 +1,8 @@
-# $NetBSD: Makefile,v 1.5 2017/12/17 14:30:36 bacon Exp $
+# $NetBSD: Makefile,v 1.6 2017/12/27 23:44:01 he Exp $
DISTNAME= bwa-0.7.17
CATEGORIES= biology
+PKGREVISION= 1
GITHUB_TAG= v${PKGVERSION_NOREV}
MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/}
diff --git a/biology/bwa/distinfo b/biology/bwa/distinfo
index abf8b8cd593..be23d42ed60 100644
--- a/biology/bwa/distinfo
+++ b/biology/bwa/distinfo
@@ -1,7 +1,8 @@
-$NetBSD: distinfo,v 1.5 2017/12/17 14:30:36 bacon Exp $
+$NetBSD: distinfo,v 1.6 2017/12/27 23:44:01 he Exp $
SHA1 (bwa-0.7.17.tar.gz) = 77f9aac723110227ea51cb42011336d291d03723
RMD160 (bwa-0.7.17.tar.gz) = d26a266387dee4fc9fcf6eef4f7ffcc076495c22
SHA512 (bwa-0.7.17.tar.gz) = 114e61b7cc5edcb67172d1eca7be1fa670ea33dd48b5c02c98318e254871363775c0dab327fd7ee7023200a5fedc745fa01cbe0fd9550d783f091d4df6926f48
Size (bwa-0.7.17.tar.gz) = 232593 bytes
SHA1 (patch-Makefile) = 72ac08d92540a88da08bf4d988ca3f6132327a6a
+SHA1 (patch-kopen.c) = ecc92efa3ebe4da484aa6760e23de9437b000644
diff --git a/biology/bwa/patches/patch-kopen.c b/biology/bwa/patches/patch-kopen.c
new file mode 100644
index 00000000000..bf3c18bf718
--- /dev/null
+++ b/biology/bwa/patches/patch-kopen.c
@@ -0,0 +1,15 @@
+$NetBSD: patch-kopen.c,v 1.3 2017/12/27 23:44:01 he Exp $
+
+Add includes for getting timevals and select prototype into scope.
+
+--- kopen.c.orig 2017-10-23 17:10:17.000000000 +0000
++++ kopen.c
+@@ -12,6 +12,8 @@
+ #include <netdb.h>
+ #include <arpa/inet.h>
+ #include <sys/socket.h>
++#include <sys/time.h>
++#include <sys/select.h>
+ #endif
+
+ #ifdef USE_MALLOC_WRAPPERS