diff options
| author | brook <brook@pkgsrc.org> | 2021-05-29 17:35:18 +0000 |
|---|---|---|
| committer | brook <brook@pkgsrc.org> | 2021-05-29 17:35:18 +0000 |
| commit | 6885ca90d3b0e250025b2f91c4a2d29e74f11f2c (patch) | |
| tree | 5a9aa5a8ff0a288471c68b7b33f01d876034b25b /biology | |
| parent | 8d9dea1db28185a8314f7785f92c4382ed27b221 (diff) | |
| download | pkgsrc-6885ca90d3b0e250025b2f91c4a2d29e74f11f2c.tar.gz | |
biology/minimap2: install minimap2 program instead of python binding
The distfile for minimap2 includes two different components: (i) the
minimap2 sequence mapping program itself, and (ii) a python binding
generally referred to as mappy. The initial version of this package
included only the python binding. However, it is more appropriate
that the minimap2 package should contain the program of the same name,
and a new package be created with the name mappy for the python
binding. Splitting these into two packages makes sense, because this
allows users to install the minimap2 package without python
dependencies.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/minimap2/Makefile | 18 | ||||
| -rw-r--r-- | biology/minimap2/PLIST | 12 |
2 files changed, 11 insertions, 19 deletions
diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index fd0b19dfb96..90879f863bc 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,29 +1,27 @@ -# $NetBSD: Makefile,v 1.1 2021/05/26 18:49:20 brook Exp $ +# $NetBSD: Makefile,v 1.2 2021/05/29 17:35:18 brook Exp $ GITHUB_PROJECT= minimap2 GITHUB_TAG= refs/tags/v2.18 DISTNAME= v2.18 PKGNAME= ${GITHUB_PROJECT}-${DISTNAME:S,^v,,} +PKGREVISION= 1 CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_GITHUB:=lh3/} DIST_SUBDIR= ${GITHUB_PROJECT} MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= https://github.com/lh3/minimap2 -COMMENT= Minimap2 python binding +COMMENT= Sequence alignment program for noisy, long reads LICENSE= mit WRKSRC= ${WRKDIR}/minimap2-2.18 USE_TOOLS+= gmake -INSTALLATION_DIRS+= share/examples/minimap2 +INSTALLATION_DIRS+= bin ${PKGMANDIR}/man1 -post-install: - ${INSTALL_DATA} ${WRKSRC}/README.md ${DESTDIR}${PREFIX}/share/examples/minimap2 - ${INSTALL_DATA} ${WRKSRC}/cookbook.md ${DESTDIR}${PREFIX}/share/examples/minimap2 +do-install: + ${INSTALL} ${WRKSRC}/minimap2 ${DESTDIR}${PREFIX}/bin + ${INSTALL_DATA} ${WRKSRC}/minimap2.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1 -BUILDLINK_DEPENDS.py-cython+= build -BUILDLINK_API_DEPENDS.py-cython+= ${PYPKGPREFIX}-cython>=0.29.23 -.include "../../devel/py-cython/buildlink3.mk" -.include "../../lang/python/egg.mk" +.include "../../devel/zlib/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/minimap2/PLIST b/biology/minimap2/PLIST index 8c68d6a6aa6..7139aa37d8b 100644 --- a/biology/minimap2/PLIST +++ b/biology/minimap2/PLIST @@ -1,9 +1,3 @@ -@comment $NetBSD: PLIST,v 1.1 2021/05/26 18:49:20 brook Exp $ -bin/minimap2.py -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/PKG-INFO -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/SOURCES.txt -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/dependency_links.txt -${PYSITELIB}/mappy-${PKGVERSION}-py${PYVERSSUFFIX}.egg-info/top_level.txt -${PYSITELIB}/mappy.so -share/examples/minimap2/README.md -share/examples/minimap2/cookbook.md +@comment $NetBSD: PLIST,v 1.2 2021/05/29 17:35:18 brook Exp $ +bin/minimap2 +man/man1/minimap2.1 |