diff options
| author | bacon <bacon@pkgsrc.org> | 2021-03-24 18:22:53 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-03-24 18:22:53 +0000 |
| commit | 9664f306e36fd092410ff18c764d7924d8267b83 (patch) | |
| tree | ab4aaad8773d9881683d9881edcf0f4e89ce2e87 /biology | |
| parent | ab4eb23e1a3d30622178f34c526d38a8b126ed1a (diff) | |
| download | pkgsrc-9664f306e36fd092410ff18c764d7924d8267b83.tar.gz | |
biology/vcf2hap: import vcf2hap-0.1.2
vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq.
vcf2hap is extremely fast and requires a trivial amount of memory regardless of
the size of the VCF file.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/vcf2hap/DESCR | 4 | ||||
| -rw-r--r-- | biology/vcf2hap/Makefile | 19 | ||||
| -rw-r--r-- | biology/vcf2hap/PLIST | 3 | ||||
| -rw-r--r-- | biology/vcf2hap/distinfo | 6 |
4 files changed, 32 insertions, 0 deletions
diff --git a/biology/vcf2hap/DESCR b/biology/vcf2hap/DESCR new file mode 100644 index 00000000000..0d3f7bc3d89 --- /dev/null +++ b/biology/vcf2hap/DESCR @@ -0,0 +1,4 @@ +vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file +is required by haplohseq. +vcf2hap is extremely fast and requires a trivial amount of memory regardless of +the size of the VCF file. diff --git a/biology/vcf2hap/Makefile b/biology/vcf2hap/Makefile new file mode 100644 index 00000000000..de91656004d --- /dev/null +++ b/biology/vcf2hap/Makefile @@ -0,0 +1,19 @@ +# $NetBSD: Makefile,v 1.1 2021/03/24 18:22:53 bacon Exp $ + +DISTNAME= vcf2hap-0.1.2 +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://github.com/auerlab/vcf2hap +COMMENT= Generate .hap file from VCF for haplohseq +LICENSE= 2-clause-bsd + +pre-build: + cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend + +do-test: + cd ${WRKSRC}/Test && ./run-test.sh + +.include "../../biology/biolibc/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/vcf2hap/PLIST b/biology/vcf2hap/PLIST new file mode 100644 index 00000000000..37845b33c01 --- /dev/null +++ b/biology/vcf2hap/PLIST @@ -0,0 +1,3 @@ +@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:22:53 bacon Exp $ +bin/vcf2hap +man/man1/vcf2hap.1 diff --git a/biology/vcf2hap/distinfo b/biology/vcf2hap/distinfo new file mode 100644 index 00000000000..6a24c1fa8d7 --- /dev/null +++ b/biology/vcf2hap/distinfo @@ -0,0 +1,6 @@ +$NetBSD: distinfo,v 1.1 2021/03/24 18:22:53 bacon Exp $ + +SHA1 (vcf2hap-0.1.2.tar.gz) = a18bc1746ec4df4be88d635c18b0a6b240d2c309 +RMD160 (vcf2hap-0.1.2.tar.gz) = a7ec7f863888e005b84f59db7c2787ec19e960de +SHA512 (vcf2hap-0.1.2.tar.gz) = 4a4b3c0c63e711f7f9a57706c675bb02f9d55976b6ee3aee1e1d1eeb14f2d92a62ad952e2c03fbe5ab525174b01260b5cb305c9980b48411618bf7e9669ae7f6 +Size (vcf2hap-0.1.2.tar.gz) = 197782 bytes |