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authoradam <adam@pkgsrc.org>2021-09-29 19:00:02 +0000
committeradam <adam@pkgsrc.org>2021-09-29 19:00:02 +0000
commit3c26900bdec43ba96cb9ef764679e78883765c08 (patch)
treed7d1327295be82f463d6fc3b3697f16b74f504ff /biology
parent914bbf781af88c0cb849a9b37376e4c15c838803 (diff)
downloadpkgsrc-3c26900bdec43ba96cb9ef764679e78883765c08.tar.gz
revbump for boost-libs
Diffstat (limited to 'biology')
-rw-r--r--biology/canu/Makefile4
-rw-r--r--biology/coordgenlibs/Makefile4
-rw-r--r--biology/coordgenlibs/buildlink3.mk4
-rw-r--r--biology/htslib/Makefile4
-rw-r--r--biology/maeparser/Makefile4
-rw-r--r--biology/maeparser/buildlink3.mk4
-rw-r--r--biology/ncbi-blast+/Makefile3
-rw-r--r--biology/openbabel/Makefile4
8 files changed, 16 insertions, 15 deletions
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index b8925f9c318..c6138c754ea 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.13 2021/05/24 19:49:10 wiz Exp $
+# $NetBSD: Makefile,v 1.14 2021/09/29 19:00:20 adam Exp $
DISTNAME= canu-1.8
-PKGREVISION= 10
+PKGREVISION= 11
CATEGORIES= biology java
MASTER_SITES= ${MASTER_SITE_GITHUB:=marbl/}
GITHUB_TAG= v${PKGVERSION_NOREV}
diff --git a/biology/coordgenlibs/Makefile b/biology/coordgenlibs/Makefile
index 33371a26ef8..1dccb55ed52 100644
--- a/biology/coordgenlibs/Makefile
+++ b/biology/coordgenlibs/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.3 2021/04/21 13:24:06 adam Exp $
+# $NetBSD: Makefile,v 1.4 2021/09/29 19:00:03 adam Exp $
GITHUB_TAG= v${PKGVERSION_NOREV}
DISTNAME= coordgenlibs-1.4.2
-PKGREVISION= 2
+PKGREVISION= 3
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=schrodinger/}
diff --git a/biology/coordgenlibs/buildlink3.mk b/biology/coordgenlibs/buildlink3.mk
index 1f2096b157e..54c0ce9155d 100644
--- a/biology/coordgenlibs/buildlink3.mk
+++ b/biology/coordgenlibs/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.3 2021/04/21 13:24:06 adam Exp $
+# $NetBSD: buildlink3.mk,v 1.4 2021/09/29 19:00:03 adam Exp $
BUILDLINK_TREE+= coordgenlibs
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= coordgenlibs
COORDGENLIBS_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.coordgenlibs+= coordgenlibs>=1.4.2
-BUILDLINK_ABI_DEPENDS.coordgenlibs?= coordgenlibs>=1.4.2nb2
+BUILDLINK_ABI_DEPENDS.coordgenlibs?= coordgenlibs>=1.4.2nb3
BUILDLINK_PKGSRCDIR.coordgenlibs?= ../../biology/coordgenlibs
.include "../../biology/maeparser/buildlink3.mk"
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 8271b3bfb3e..7f6d1336bdb 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.21 2021/05/24 19:49:11 wiz Exp $
+# $NetBSD: Makefile,v 1.22 2021/09/29 19:00:20 adam Exp $
DISTNAME= htslib-1.12
-PKGREVISION= 2
+PKGREVISION= 3
CATEGORIES= biology
# Github-generated distfiles are incomplete, use custom tarballs instead
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${PKGVERSION_NOREV}/
diff --git a/biology/maeparser/Makefile b/biology/maeparser/Makefile
index 5dbd72eb6ad..638a8b4712d 100644
--- a/biology/maeparser/Makefile
+++ b/biology/maeparser/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.3 2021/04/21 13:24:07 adam Exp $
+# $NetBSD: Makefile,v 1.4 2021/09/29 19:00:03 adam Exp $
GITHUB_TAG= v${PKGVERSION_NOREV}
DISTNAME= maeparser-1.2.4
-PKGREVISION= 2
+PKGREVISION= 3
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=schrodinger/}
diff --git a/biology/maeparser/buildlink3.mk b/biology/maeparser/buildlink3.mk
index e9e49efe955..2bd6a934156 100644
--- a/biology/maeparser/buildlink3.mk
+++ b/biology/maeparser/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.3 2021/04/21 13:24:07 adam Exp $
+# $NetBSD: buildlink3.mk,v 1.4 2021/09/29 19:00:03 adam Exp $
BUILDLINK_TREE+= maeparser
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= maeparser
MAEPARSER_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.maeparser+= maeparser>=1.2.4
-BUILDLINK_ABI_DEPENDS.maeparser?= maeparser>=1.2.4nb2
+BUILDLINK_ABI_DEPENDS.maeparser?= maeparser>=1.2.4nb3
BUILDLINK_PKGSRCDIR.maeparser?= ../../biology/maeparser
.include "../../devel/boost-libs/buildlink3.mk"
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 5dc30266155..573d8784259 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,7 +1,8 @@
-# $NetBSD: Makefile,v 1.24 2021/06/11 13:47:39 bacon Exp $
+# $NetBSD: Makefile,v 1.25 2021/09/29 19:00:20 adam Exp $
DISTNAME= ncbi-blast-2.11.0+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/openbabel/Makefile b/biology/openbabel/Makefile
index 03cc07082f3..62cb6fe13c1 100644
--- a/biology/openbabel/Makefile
+++ b/biology/openbabel/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.48 2021/04/21 13:24:24 adam Exp $
+# $NetBSD: Makefile,v 1.49 2021/09/29 19:00:21 adam Exp $
#
GITHUB_PROJECT= openbabel
DISTNAME= openbabel-${RELVERSION:S/-/./g}
-PKGREVISION= 7
+PKGREVISION= 8
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=openbabel/}
GITHUB_TAG= ${PKGBASE}-${RELVERSION}