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authoradam <adam@pkgsrc.org>2021-12-08 16:01:42 +0000
committeradam <adam@pkgsrc.org>2021-12-08 16:01:42 +0000
commitac26554d9f5c20806cbab620560e5cdb9f5af267 (patch)
treef19c5de6d0b7dd975754ab007486cb1a5d65f5ef /biology
parent89042bb7303ab35491df57328b4ced04ed0f68bc (diff)
downloadpkgsrc-ac26554d9f5c20806cbab620560e5cdb9f5af267.tar.gz
revbump for icu and libffi
Diffstat (limited to 'biology')
-rw-r--r--biology/azara/Makefile4
-rw-r--r--biology/bodr/Makefile4
-rw-r--r--biology/chemtool/Makefile4
-rw-r--r--biology/gabedit/Makefile4
-rw-r--r--biology/gnome-chemistry-utils/Makefile4
-rw-r--r--biology/gromacs/Makefile4
-rw-r--r--biology/htslib/Makefile4
-rw-r--r--biology/molsketch/Makefile4
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/openbabel/Makefile4
-rw-r--r--biology/openbabel/buildlink3.mk4
-rw-r--r--biology/py-mol/Makefile4
12 files changed, 24 insertions, 24 deletions
diff --git a/biology/azara/Makefile b/biology/azara/Makefile
index bb8010c970d..84ae4a92cd9 100644
--- a/biology/azara/Makefile
+++ b/biology/azara/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.17 2020/03/08 16:48:51 wiz Exp $
+# $NetBSD: Makefile,v 1.18 2021/12/08 16:03:23 adam Exp $
#
DISTNAME= azara-2.7-src
PKGNAME= azara-2.7
-PKGREVISION= 8
+PKGREVISION= 9
CATEGORIES= biology
MASTER_SITES= http://www.ccpn.ac.uk/download/azara/
diff --git a/biology/bodr/Makefile b/biology/bodr/Makefile
index de6c145e5d7..03a6e69cf48 100644
--- a/biology/bodr/Makefile
+++ b/biology/bodr/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.17 2021/05/24 19:49:10 wiz Exp $
+# $NetBSD: Makefile,v 1.18 2021/12/08 16:03:23 adam Exp $
#
DISTNAME= bodr-9
-PKGREVISION= 14
+PKGREVISION= 15
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=bodr/}
diff --git a/biology/chemtool/Makefile b/biology/chemtool/Makefile
index 496dd1f0110..0f0d4362fc0 100644
--- a/biology/chemtool/Makefile
+++ b/biology/chemtool/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.65 2020/08/17 20:18:13 leot Exp $
+# $NetBSD: Makefile,v 1.66 2021/12/08 16:03:23 adam Exp $
DISTNAME= chemtool-1.6.14
-PKGREVISION= 15
+PKGREVISION= 16
CATEGORIES= biology
MASTER_SITES= http://ruby.chemie.uni-freiburg.de/~martin/chemtool/
diff --git a/biology/gabedit/Makefile b/biology/gabedit/Makefile
index 0e35d05ab90..0a8f908520d 100644
--- a/biology/gabedit/Makefile
+++ b/biology/gabedit/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.17 2020/08/17 20:18:13 leot Exp $
+# $NetBSD: Makefile,v 1.18 2021/12/08 16:03:23 adam Exp $
PKGNAME= gabedit-2.4.8
-PKGREVISION= 11
+PKGREVISION= 12
DISTNAME= GabeditSrc248
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=gabedit/}
diff --git a/biology/gnome-chemistry-utils/Makefile b/biology/gnome-chemistry-utils/Makefile
index 6e65ac5ca6f..c441e7c33a1 100644
--- a/biology/gnome-chemistry-utils/Makefile
+++ b/biology/gnome-chemistry-utils/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.53 2021/05/24 19:49:10 wiz Exp $
+# $NetBSD: Makefile,v 1.54 2021/12/08 16:03:23 adam Exp $
#
DISTNAME= gnome-chemistry-utils-0.14.16
-PKGREVISION= 6
+PKGREVISION= 7
CATEGORIES= biology
MASTER_SITES= http://download-mirror.savannah.gnu.org/releases/gchemutils/0.14/
EXTRACT_SUFX= .tar.bz2
diff --git a/biology/gromacs/Makefile b/biology/gromacs/Makefile
index d37d96c8164..458dab0a39f 100644
--- a/biology/gromacs/Makefile
+++ b/biology/gromacs/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.25 2021/06/01 09:12:22 wiz Exp $
+# $NetBSD: Makefile,v 1.26 2021/12/08 16:03:23 adam Exp $
DISTNAME= gromacs-4.5.5
-PKGREVISION= 14
+PKGREVISION= 15
CATEGORIES= biology
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 7f6d1336bdb..1679bb60fb8 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.22 2021/09/29 19:00:20 adam Exp $
+# $NetBSD: Makefile,v 1.23 2021/12/08 16:03:23 adam Exp $
DISTNAME= htslib-1.12
-PKGREVISION= 3
+PKGREVISION= 4
CATEGORIES= biology
# Github-generated distfiles are incomplete, use custom tarballs instead
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${PKGVERSION_NOREV}/
diff --git a/biology/molsketch/Makefile b/biology/molsketch/Makefile
index 1f4acade916..621bfd0c61e 100644
--- a/biology/molsketch/Makefile
+++ b/biology/molsketch/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.4 2021/04/21 11:41:03 adam Exp $
+# $NetBSD: Makefile,v 1.5 2021/12/08 16:03:23 adam Exp $
DISTNAME= Molsketch-0.7.2-src
PKGNAME= ${DISTNAME:S/-src//:tl}
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=molsketch/}
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 573d8784259..06bc43ccda9 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.25 2021/09/29 19:00:20 adam Exp $
+# $NetBSD: Makefile,v 1.26 2021/12/08 16:03:24 adam Exp $
DISTNAME= ncbi-blast-2.11.0+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/openbabel/Makefile b/biology/openbabel/Makefile
index 62cb6fe13c1..e50591ab46b 100644
--- a/biology/openbabel/Makefile
+++ b/biology/openbabel/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.49 2021/09/29 19:00:21 adam Exp $
+# $NetBSD: Makefile,v 1.50 2021/12/08 16:01:45 adam Exp $
#
GITHUB_PROJECT= openbabel
DISTNAME= openbabel-${RELVERSION:S/-/./g}
-PKGREVISION= 8
+PKGREVISION= 9
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=openbabel/}
GITHUB_TAG= ${PKGBASE}-${RELVERSION}
diff --git a/biology/openbabel/buildlink3.mk b/biology/openbabel/buildlink3.mk
index 2e5950d0519..7d65fdc64da 100644
--- a/biology/openbabel/buildlink3.mk
+++ b/biology/openbabel/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.10 2021/04/21 11:40:13 adam Exp $
+# $NetBSD: buildlink3.mk,v 1.11 2021/12/08 16:01:45 adam Exp $
BUILDLINK_TREE+= openbabel
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= openbabel
OPENBABEL_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.openbabel+= openbabel>=3.0.0nb1
-BUILDLINK_ABI_DEPENDS.openbabel?= openbabel>=3.1.1nb6
+BUILDLINK_ABI_DEPENDS.openbabel?= openbabel>=3.1.1nb8
BUILDLINK_PKGSRCDIR.openbabel?= ../../biology/openbabel
.include "../../graphics/cairo/buildlink3.mk"
diff --git a/biology/py-mol/Makefile b/biology/py-mol/Makefile
index 1147b6cec39..61d504eff7a 100644
--- a/biology/py-mol/Makefile
+++ b/biology/py-mol/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.37 2020/10/12 21:51:59 bacon Exp $
+# $NetBSD: Makefile,v 1.38 2021/12/08 16:03:24 adam Exp $
DISTNAME= pymol-v1.5.0.1
PKGNAME= ${PYPKGPREFIX}-${DISTNAME:S/pymol-v/mol-/}
EGG_NAME= pymol-1.5.0.1
-PKGREVISION= 8
+PKGREVISION= 9
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=pymol/}
EXTRACT_SUFX= .tar.bz2