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authoradam <adam@pkgsrc.org>2021-04-21 13:24:06 +0000
committeradam <adam@pkgsrc.org>2021-04-21 13:24:06 +0000
commitae0a61b94066a8c86753f1f663bc074b2b853e5f (patch)
treef7b7566748234b030e4cd966e480fc3dbbbd3c04 /biology
parent10d612e8ec31c0b03c032c8c6007b86cb84319bb (diff)
downloadpkgsrc-ae0a61b94066a8c86753f1f663bc074b2b853e5f.tar.gz
revbump for boost-libs
Diffstat (limited to 'biology')
-rw-r--r--biology/canu/Makefile4
-rw-r--r--biology/coordgenlibs/Makefile4
-rw-r--r--biology/coordgenlibs/buildlink3.mk4
-rw-r--r--biology/htslib/Makefile3
-rw-r--r--biology/maeparser/Makefile4
-rw-r--r--biology/maeparser/buildlink3.mk4
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/openbabel/Makefile4
8 files changed, 16 insertions, 15 deletions
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index f4a4d5e6e80..902b9388aab 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.11 2021/01/01 08:24:34 ryoon Exp $
+# $NetBSD: Makefile,v 1.12 2021/04/21 13:24:23 adam Exp $
DISTNAME= canu-1.8
-PKGREVISION= 8
+PKGREVISION= 9
CATEGORIES= biology java
MASTER_SITES= ${MASTER_SITE_GITHUB:=marbl/}
GITHUB_TAG= v${PKGVERSION_NOREV}
diff --git a/biology/coordgenlibs/Makefile b/biology/coordgenlibs/Makefile
index e2aa882bed8..33371a26ef8 100644
--- a/biology/coordgenlibs/Makefile
+++ b/biology/coordgenlibs/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.2 2021/01/01 08:24:34 ryoon Exp $
+# $NetBSD: Makefile,v 1.3 2021/04/21 13:24:06 adam Exp $
GITHUB_TAG= v${PKGVERSION_NOREV}
DISTNAME= coordgenlibs-1.4.2
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=schrodinger/}
diff --git a/biology/coordgenlibs/buildlink3.mk b/biology/coordgenlibs/buildlink3.mk
index f3f9a99d45d..1f2096b157e 100644
--- a/biology/coordgenlibs/buildlink3.mk
+++ b/biology/coordgenlibs/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.2 2021/01/01 08:24:34 ryoon Exp $
+# $NetBSD: buildlink3.mk,v 1.3 2021/04/21 13:24:06 adam Exp $
BUILDLINK_TREE+= coordgenlibs
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= coordgenlibs
COORDGENLIBS_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.coordgenlibs+= coordgenlibs>=1.4.2
-BUILDLINK_ABI_DEPENDS.coordgenlibs?= coordgenlibs>=1.4.2nb1
+BUILDLINK_ABI_DEPENDS.coordgenlibs?= coordgenlibs>=1.4.2nb2
BUILDLINK_PKGSRCDIR.coordgenlibs?= ../../biology/coordgenlibs
.include "../../biology/maeparser/buildlink3.mk"
diff --git a/biology/htslib/Makefile b/biology/htslib/Makefile
index 1103edec029..06909f0a009 100644
--- a/biology/htslib/Makefile
+++ b/biology/htslib/Makefile
@@ -1,6 +1,7 @@
-# $NetBSD: Makefile,v 1.19 2021/03/20 18:17:07 bacon Exp $
+# $NetBSD: Makefile,v 1.20 2021/04/21 13:24:24 adam Exp $
DISTNAME= htslib-1.12
+PKGREVISION= 1
CATEGORIES= biology
# Github-generated distfiles are incomplete, use custom tarballs instead
MASTER_SITES= https://github.com/samtools/htslib/releases/download/${PKGVERSION_NOREV}/
diff --git a/biology/maeparser/Makefile b/biology/maeparser/Makefile
index 546d52edbb3..5dbd72eb6ad 100644
--- a/biology/maeparser/Makefile
+++ b/biology/maeparser/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.2 2021/01/01 08:24:34 ryoon Exp $
+# $NetBSD: Makefile,v 1.3 2021/04/21 13:24:07 adam Exp $
GITHUB_TAG= v${PKGVERSION_NOREV}
DISTNAME= maeparser-1.2.4
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=schrodinger/}
diff --git a/biology/maeparser/buildlink3.mk b/biology/maeparser/buildlink3.mk
index fcdc4a47779..e9e49efe955 100644
--- a/biology/maeparser/buildlink3.mk
+++ b/biology/maeparser/buildlink3.mk
@@ -1,4 +1,4 @@
-# $NetBSD: buildlink3.mk,v 1.2 2021/01/01 08:24:34 ryoon Exp $
+# $NetBSD: buildlink3.mk,v 1.3 2021/04/21 13:24:07 adam Exp $
BUILDLINK_TREE+= maeparser
@@ -6,7 +6,7 @@ BUILDLINK_TREE+= maeparser
MAEPARSER_BUILDLINK3_MK:=
BUILDLINK_API_DEPENDS.maeparser+= maeparser>=1.2.4
-BUILDLINK_ABI_DEPENDS.maeparser?= maeparser>=1.2.4nb1
+BUILDLINK_ABI_DEPENDS.maeparser?= maeparser>=1.2.4nb2
BUILDLINK_PKGSRCDIR.maeparser?= ../../biology/maeparser
.include "../../devel/boost-libs/buildlink3.mk"
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 1e6bb710a0a..b629ad91542 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.21 2021/04/21 11:41:03 adam Exp $
+# $NetBSD: Makefile,v 1.22 2021/04/21 13:24:24 adam Exp $
DISTNAME= ncbi-blast-2.8.1+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
-PKGREVISION= 13
+PKGREVISION= 14
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/openbabel/Makefile b/biology/openbabel/Makefile
index 8feabd30ca7..03cc07082f3 100644
--- a/biology/openbabel/Makefile
+++ b/biology/openbabel/Makefile
@@ -1,9 +1,9 @@
-# $NetBSD: Makefile,v 1.47 2021/04/21 11:40:13 adam Exp $
+# $NetBSD: Makefile,v 1.48 2021/04/21 13:24:24 adam Exp $
#
GITHUB_PROJECT= openbabel
DISTNAME= openbabel-${RELVERSION:S/-/./g}
-PKGREVISION= 6
+PKGREVISION= 7
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=openbabel/}
GITHUB_TAG= ${PKGBASE}-${RELVERSION}