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| author | bacon <bacon@pkgsrc.org> | 2021-12-17 15:10:06 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-12-17 15:10:06 +0000 |
| commit | c78a52e93b91c4d4ae8a5482daed63031f61f1ec (patch) | |
| tree | 6947089d6095c21adcbe7398a53dcc0d3e684b6f /biology | |
| parent | 8449a0b802138a26470e1ab7c36e88317cfc1b4f (diff) | |
| download | pkgsrc-c78a52e93b91c4d4ae8a5482daed63031f61f1ec.tar.gz | |
biology/samtools: Update to 1.14
Numerous fixes and enhancements since 1.12
Changes: https://github.com/samtools/samtools/tags
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/samtools/Makefile | 6 | ||||
| -rw-r--r-- | biology/samtools/PLIST | 4 | ||||
| -rw-r--r-- | biology/samtools/distinfo | 8 | ||||
| -rw-r--r-- | biology/samtools/patches/patch-Makefile | 2 |
4 files changed, 10 insertions, 10 deletions
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index cc38c534166..78c99151d27 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,7 +1,6 @@ -# $NetBSD: Makefile,v 1.12 2021/05/24 19:49:11 wiz Exp $ +# $NetBSD: Makefile,v 1.13 2021/12/17 15:10:06 bacon Exp $ -DISTNAME= samtools-1.12 -PKGREVISION= 1 +DISTNAME= samtools-1.14 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} @@ -35,7 +34,6 @@ TEST_TARGET= test pre-configure: cd ${WRKSRC} && autoreconf -if -BUILDLINK_API_DEPENDS.htslib+= htslib>=1.10.2 .include "../../biology/htslib/buildlink3.mk" .include "../../devel/zlib/buildlink3.mk" .include "../../lang/python/application.mk" diff --git a/biology/samtools/PLIST b/biology/samtools/PLIST index d8b3d51a4e0..8bdccfa7edd 100644 --- a/biology/samtools/PLIST +++ b/biology/samtools/PLIST @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.3 2021/03/20 18:17:07 bacon Exp $ +@comment $NetBSD: PLIST,v 1.4 2021/12/17 15:10:06 bacon Exp $ bin/ace2sam bin/blast2sam.pl bin/bowtie2sam.pl @@ -40,6 +40,7 @@ man/man1/samtools-flags.1 man/man1/samtools-flagstat.1 man/man1/samtools-fqidx.1 man/man1/samtools-idxstats.1 +man/man1/samtools-import.1 man/man1/samtools-index.1 man/man1/samtools-markdup.1 man/man1/samtools-merge.1 @@ -48,6 +49,7 @@ man/man1/samtools-phase.1 man/man1/samtools-quickcheck.1 man/man1/samtools-reheader.1 man/man1/samtools-rmdup.1 +man/man1/samtools-samples.1 man/man1/samtools-sort.1 man/man1/samtools-split.1 man/man1/samtools-stats.1 diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 4b4a19957cf..3a3b5746a1d 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.6 2021/10/26 10:03:44 nia Exp $ +$NetBSD: distinfo,v 1.7 2021/12/17 15:10:06 bacon Exp $ -BLAKE2s (samtools-1.12.tar.gz) = 5da0299084134f46286b6cae23738ff493b1144a660fea417f05d36bd78cc382 -SHA512 (samtools-1.12.tar.gz) = 7f468a4740610c2fdc42d8f020d3082e5b2b2e73b0c2dfc19b212ca259d703f34f7df0922e409a94500ccc0357d4d46306035be29c23a523ef6e959022f9d1db -Size (samtools-1.12.tar.gz) = 4528460 bytes +BLAKE2s (samtools-1.14.tar.gz) = 86b0e03b47d62619507b3b3284ac82689caa962da424c4af03f6690113a2ea50 +SHA512 (samtools-1.14.tar.gz) = fafc256fff8d2725b8a8ff4555cdb14aa0d32eec3a9afc6ff8ab7b474deed48f2a108805cc8f020cc3a28eec0d04034784d1af340bf89eb3c5f6ef3f262ac489 +Size (samtools-1.14.tar.gz) = 4933354 bytes SHA1 (patch-Makefile) = 3fc1f1d67167c8ca8eff1ed17f7a084ec3d4579d diff --git a/biology/samtools/patches/patch-Makefile b/biology/samtools/patches/patch-Makefile index 700832db503..6e4eef0df64 100644 --- a/biology/samtools/patches/patch-Makefile +++ b/biology/samtools/patches/patch-Makefile @@ -1,4 +1,4 @@ -$NetBSD: patch-Makefile,v 1.2 2021/03/20 18:17:07 bacon Exp $ +$NetBSD: patch-Makefile,v 1.3 2021/12/17 15:10:06 bacon Exp $ # Respect pkgsrc env |