diff options
| author | bacon <bacon@pkgsrc.org> | 2021-12-14 19:05:39 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2021-12-14 19:05:39 +0000 |
| commit | c9349eaeab8cef1493b90275551c72705ade376a (patch) | |
| tree | b7a5b4696ff6089846fdb027609702964f16452f /biology | |
| parent | 508d7bc467d58fa885429c90b8f423e4ca1af99e (diff) | |
| download | pkgsrc-c9349eaeab8cef1493b90275551c72705ade376a.tar.gz | |
biology/biolibc-tools: Update to 0.1.1
Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements
Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/biolibc-tools/Makefile | 10 | ||||
| -rw-r--r-- | biology/biolibc-tools/PLIST | 28 | ||||
| -rw-r--r-- | biology/biolibc-tools/distinfo | 8 |
3 files changed, 31 insertions, 15 deletions
diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile index 9ccd93c04e8..7bbaff06b4f 100644 --- a/biology/biolibc-tools/Makefile +++ b/biology/biolibc-tools/Makefile @@ -1,9 +1,8 @@ -# $NetBSD: Makefile,v 1.1 2021/08/31 15:55:16 bacon Exp $ +# $NetBSD: Makefile,v 1.2 2021/12/14 19:05:39 bacon Exp $ -DISTNAME= biolibc-tools-0.1.0.36 +DISTNAME= biolibc-tools-0.1.1 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} -GITHUB_TAG= 0a781f7ec6566051382d7f4950fd673f73b7fb2f MAINTAINER= bacon@NetBSD.org HOMEPAGE= https://github.com/auerlab/biolibc-tools @@ -11,10 +10,13 @@ COMMENT= High-performance bioinformatics tools based on biolibc LICENSE= 2-clause-bsd BUILD_TARGET= depend all +MAKE_ENV+= VERSION=${PKGVERSION} INSTALL_TARGET= install-strip +pre-build: + cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend + .include "../../devel/xxhash/buildlink3.mk" .include "../../devel/uthash/buildlink3.mk" .include "../../biology/biolibc/buildlink3.mk" -.include "../../devel/libxtend/buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/biolibc-tools/PLIST b/biology/biolibc-tools/PLIST index 94e83cd7924..812e68d1b08 100644 --- a/biology/biolibc-tools/PLIST +++ b/biology/biolibc-tools/PLIST @@ -1,8 +1,22 @@ -@comment $NetBSD: PLIST,v 1.1 2021/08/31 15:55:16 bacon Exp $ -bin/fastq-derep.sh -bin/fastx-derep -bin/fastx2tsv +@comment $NetBSD: PLIST,v 1.2 2021/12/14 19:05:39 bacon Exp $ +bin/blt +libexec/biolibc-tools/chrom-lens +libexec/biolibc-tools/extract-seq +libexec/biolibc-tools/fasta2seq +libexec/biolibc-tools/fastq-derep.sh +libexec/biolibc-tools/fastx-derep +libexec/biolibc-tools/fastx2tsv +libexec/biolibc-tools/find-orfs +libexec/biolibc-tools/gff2bed libexec/biolibc-tools/uniq-seqs.awk -man/man1/fastq-derep.sh.1 -man/man1/fastx-derep.1 -man/man1/fastx2tsv.1 +libexec/biolibc-tools/vcf-search +man/man1/blt-chrom-lens.1 +man/man1/blt-extract-seq.1 +man/man1/blt-fasta2seq.1 +man/man1/blt-fastq-derep.sh.1 +man/man1/blt-fastx-derep.1 +man/man1/blt-fastx2tsv.1 +man/man1/blt-find-orfs.1 +man/man1/blt-gff2bed.1 +man/man1/blt-vcf-search.1 +man/man1/blt.1 diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo index d4fb5cd1a87..5686cd816e3 100644 --- a/biology/biolibc-tools/distinfo +++ b/biology/biolibc-tools/distinfo @@ -1,5 +1,5 @@ -$NetBSD: distinfo,v 1.3 2021/10/26 10:03:37 nia Exp $ +$NetBSD: distinfo,v 1.4 2021/12/14 19:05:39 bacon Exp $ -BLAKE2s (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 1a919142ac6a2fdec136ae63ca85f83885771ba7732586cdd8b4dd09b871bef7 -SHA512 (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 475fd700923e9e2aa660df80cd7cdb82f0b3386b6d9ebcd3518697616240af021bb5010ff53e885d2d1d582db291a614a7ecf2c5ac4c4e4883700f282fbfadc4 -Size (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 11611 bytes +BLAKE2s (biolibc-tools-0.1.1.tar.gz) = 9b8d4999c641b0b5aaaef88102d59b4972b5f1a6b6782546e274128c57f19c98 +SHA512 (biolibc-tools-0.1.1.tar.gz) = cfd2e7bacef0093a87c28dd4fbab8ee7007e874ee638816c75f6df92dd436d13a1fb6d5faa8e97491711bece19b8bf7d3f5ed0301c732d6c86f4255872884ff6 +Size (biolibc-tools-0.1.1.tar.gz) = 21700 bytes |