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authorkristerw <kristerw@pkgsrc.org>2005-06-19 01:13:23 +0000
committerkristerw <kristerw@pkgsrc.org>2005-06-19 01:13:23 +0000
commit49cb8e1be93494d502d051c40cda3597fe22ee64 (patch)
tree7f49173dbe01859cd237207a3b4310c870f48675 /biology
parent627ac5f5c970cb27617f323414b134f7df89e3ed (diff)
downloadpkgsrc-49cb8e1be93494d502d051c40cda3597fe22ee64.tar.gz
Prevent paths to the build directories from being included in the package.
Bump PKGREVISION.
Diffstat (limited to 'biology')
-rw-r--r--biology/mummer/Makefile4
-rw-r--r--biology/mummer/distinfo3
-rw-r--r--biology/mummer/patches/patch-ab13
3 files changed, 18 insertions, 2 deletions
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index 1d3f67d4bb8..d3c35a66244 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -1,8 +1,9 @@
-# $NetBSD: Makefile,v 1.7 2005/06/16 06:57:40 jlam Exp $
+# $NetBSD: Makefile,v 1.8 2005/06/19 01:13:23 kristerw Exp $
#
DISTNAME= MUMmer3.15
PKGNAME= mummer-3.15
+PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.tigr.org/pub/software/MUMmer/
@@ -14,6 +15,7 @@ WRKSRC= ${WRKDIR}/${DISTNAME}
USE_TOOLS+= gmake
MAKE_ENV+= SH="${SH}"
+MAKE_ENV+= PERL="${PERL5}"
INSTALLATION_DIRS= bin
do-install:
diff --git a/biology/mummer/distinfo b/biology/mummer/distinfo
index 5f2e5790336..ff411468bd5 100644
--- a/biology/mummer/distinfo
+++ b/biology/mummer/distinfo
@@ -1,6 +1,7 @@
-$NetBSD: distinfo,v 1.3 2005/02/22 21:28:55 agc Exp $
+$NetBSD: distinfo,v 1.4 2005/06/19 01:13:23 kristerw Exp $
SHA1 (MUMmer3.15.tar.gz) = c8907b0b2010e3a8d07fff0dde570c12d9cf8dea
RMD160 (MUMmer3.15.tar.gz) = 223135f09c8795f7fab5219f07c7047f114056df
Size (MUMmer3.15.tar.gz) = 660102 bytes
SHA1 (patch-aa) = bf64019cbbfa53c1883641b28186146cd7c0a946
+SHA1 (patch-ab) = 8548bc11a6d43b489ea9af5dbca584ce0d2750c9
diff --git a/biology/mummer/patches/patch-ab b/biology/mummer/patches/patch-ab
new file mode 100644
index 00000000000..90db65090b2
--- /dev/null
+++ b/biology/mummer/patches/patch-ab
@@ -0,0 +1,13 @@
+$NetBSD: patch-ab,v 1.1 2005/06/19 01:13:23 kristerw Exp $
+
+--- scripts/Makefile.orig 2005-06-19 03:10:05.000000000 +0200
++++ scripts/Makefile 2005-06-19 03:10:14.000000000 +0200
+@@ -14,7 +14,7 @@
+ SCRIPT_DIR := $(CURDIR)
+ SED := $(filter /%,$(shell /bin/sh -c 'type sed'))
+ CSH := $(filter /%,$(shell /bin/sh -c 'type csh'))
+-PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
++#PERL := $(filter /%,$(shell /bin/sh -c 'type perl'))
+ VPATH := $(BIN_DIR)
+
+ ALL := exact-tandems mapview mummerplot nucmer promer \