summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authornia <nia@pkgsrc.org>2020-12-04 20:44:57 +0000
committernia <nia@pkgsrc.org>2020-12-04 20:44:57 +0000
commit77345cbaf77c9e43b7a467af6bdf4c29b1a41dd8 (patch)
tree1eccd708a0d316288b6c89678204df314ab01ff0 /biology
parent00fa5d76195777807cd64ed9f07dc0cefefe2d4b (diff)
downloadpkgsrc-77345cbaf77c9e43b7a467af6bdf4c29b1a41dd8.tar.gz
Revbump packages with a runtime Python dep but no version prefix.
For the Python 3.8 default switch.
Diffstat (limited to 'biology')
-rw-r--r--biology/bcftools/Makefile4
-rw-r--r--biology/hisat2/Makefile4
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/samtools/Makefile4
-rw-r--r--biology/stacks/Makefile4
5 files changed, 10 insertions, 10 deletions
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index 9933d341398..abb3f4402db 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.8 2020/08/31 18:06:38 wiz Exp $
+# $NetBSD: Makefile,v 1.9 2020/12/04 20:45:00 nia Exp $
DISTNAME= bcftools-1.10.2
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile
index abf9c6222f1..ed9955c6fb9 100644
--- a/biology/hisat2/Makefile
+++ b/biology/hisat2/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.4 2020/08/31 18:06:39 wiz Exp $
+# $NetBSD: Makefile,v 1.5 2020/12/04 20:45:00 nia Exp $
DISTNAME= hisat2-2.1.0.23
-PKGREVISION= 3
+PKGREVISION= 4
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=infphilo/}
GITHUB_TAG= 20f333e2cfe7ff4d1362b248912893e2644683d7
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index 334d3c56b0b..1712c8c9a1f 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,8 +1,8 @@
-# $NetBSD: Makefile,v 1.19 2020/11/05 09:07:32 ryoon Exp $
+# $NetBSD: Makefile,v 1.20 2020/12/04 20:45:00 nia Exp $
DISTNAME= ncbi-blast-2.8.1+-src
PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
-PKGREVISION= 11
+PKGREVISION= 12
CATEGORIES= biology
MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index a57f3926ea5..997c3925e1c 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.9 2020/08/31 18:06:40 wiz Exp $
+# $NetBSD: Makefile,v 1.10 2020/12/04 20:45:00 nia Exp $
DISTNAME= samtools-1.10
-PKGREVISION= 1
+PKGREVISION= 2
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/}
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile
index dc8455e4af5..2acfda4fbd1 100644
--- a/biology/stacks/Makefile
+++ b/biology/stacks/Makefile
@@ -1,7 +1,7 @@
-# $NetBSD: Makefile,v 1.4 2020/08/31 18:06:40 wiz Exp $
+# $NetBSD: Makefile,v 1.5 2020/12/04 20:45:00 nia Exp $
DISTNAME= stacks-2.2
-PKGREVISION= 3
+PKGREVISION= 4
CATEGORIES= biology
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/