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author | bacon <bacon@pkgsrc.org> | 2020-10-12 21:51:57 +0000 |
---|---|---|
committer | bacon <bacon@pkgsrc.org> | 2020-10-12 21:51:57 +0000 |
commit | afefcaa6e54efd2e5b8f95abf655d5d040ae36be (patch) | |
tree | 301b42c86078439d0507aa5e1cb691c3fb6da5d2 /biology | |
parent | 064b357d6f40e50256ec30d40eeb2381a21baa63 (diff) | |
download | pkgsrc-afefcaa6e54efd2e5b8f95abf655d5d040ae36be.tar.gz |
math/blas, math/lapack: Install interchangeable BLAS system
Install the new interchangeable BLAS system created by Thomas Orgis,
currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and
Apple's Accelerate.framework. This system allows the user to select any
BLAS implementation without modifying packages or using package options, by
setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details.
This commit should not alter behavior of existing packages as the system
defaults to Netlib BLAS/LAPACK, which until now has been the only supported
implementation.
Details:
Add new mk/blas.buildlink3.mk for inclusion in dependent packages
Install compatible Netlib math/blas and math/lapack packages
Update math/blas and math/lapack MAINTAINER approved by adam@
OpenBLAS, cblas, and lapacke will follow in separate commits
Update direct dependents to use mk/blas.buildlink3.mk
Perform recursive revbump
Diffstat (limited to 'biology')
-rw-r--r-- | biology/mpqc/Makefile | 7 | ||||
-rw-r--r-- | biology/plink/Makefile | 6 | ||||
-rw-r--r-- | biology/py-biopython/Makefile | 3 | ||||
-rw-r--r-- | biology/py-mol/Makefile | 4 |
4 files changed, 10 insertions, 10 deletions
diff --git a/biology/mpqc/Makefile b/biology/mpqc/Makefile index 98bd3fc4618..c34d4a55262 100644 --- a/biology/mpqc/Makefile +++ b/biology/mpqc/Makefile @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.17 2020/08/31 18:06:39 wiz Exp $ +# $NetBSD: Makefile,v 1.18 2020/10/12 21:51:58 bacon Exp $ DISTNAME= mpqc-2.3.1 -PKGREVISION= 9 +PKGREVISION= 10 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mpqc/} EXTRACT_SUFX= .tar.bz2 @@ -39,7 +39,6 @@ CHECK_INTERPRETER_SKIP= bin/tkmolrender .include "../../x11/tk/interpreter.mk" -.include "../../math/blas/buildlink3.mk" -.include "../../math/lapack/buildlink3.mk" +.include "../../mk/blas.buildlink3.mk" .include "../../mk/pthread.buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/plink/Makefile b/biology/plink/Makefile index 37ccc6b4813..b2939ea96eb 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -1,7 +1,8 @@ -# $NetBSD: Makefile,v 1.8 2019/01/13 22:06:42 bacon Exp $ +# $NetBSD: Makefile,v 1.9 2020/10/12 21:51:58 bacon Exp $ DISTNAME= plink-1.07-src PKGNAME= ${DISTNAME:-src=} +PKGREVISION= 1 CATEGORIES= biology #MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ EXTRACT_SUFX= .zip @@ -36,7 +37,6 @@ do-test: .include "../../devel/libf2c/buildlink3.mk" .include "../../devel/zlib/buildlink3.mk" -.include "../../math/lapack/buildlink3.mk" -.include "../../math/blas/buildlink3.mk" +.include "../../mk/blas.buildlink3.mk" .include "../../mk/dlopen.buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 6b6a452e5f6..899a668e8f4 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -1,7 +1,8 @@ -# $NetBSD: Makefile,v 1.3 2020/01/26 17:30:46 rillig Exp $ +# $NetBSD: Makefile,v 1.4 2020/10/12 21:51:59 bacon Exp $ DISTNAME= biopython-1.74 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} +PKGREVISION= 1 CATEGORIES= biology MASTER_SITES= http://biopython.org/DIST/ diff --git a/biology/py-mol/Makefile b/biology/py-mol/Makefile index 2127923236a..1147b6cec39 100644 --- a/biology/py-mol/Makefile +++ b/biology/py-mol/Makefile @@ -1,9 +1,9 @@ -# $NetBSD: Makefile,v 1.36 2020/04/27 18:33:18 adam Exp $ +# $NetBSD: Makefile,v 1.37 2020/10/12 21:51:59 bacon Exp $ DISTNAME= pymol-v1.5.0.1 PKGNAME= ${PYPKGPREFIX}-${DISTNAME:S/pymol-v/mol-/} EGG_NAME= pymol-1.5.0.1 -PKGREVISION= 7 +PKGREVISION= 8 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=pymol/} EXTRACT_SUFX= .tar.bz2 |