summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authormef <mef@pkgsrc.org>2017-05-07 13:57:12 +0000
committermef <mef@pkgsrc.org>2017-05-07 13:57:12 +0000
commit092521f474a157ae46d632ed288eabaa21c7d93e (patch)
treeb2b79b1e338972df4131b88bf149a9bc2299a011 /biology
parentb689b8bedbe7ed5300cde993b86537a7919fe40f (diff)
downloadpkgsrc-092521f474a157ae46d632ed288eabaa21c7d93e.tar.gz
Import p5-BioPerl-1.007001 as biology/p5-BioPerl.
Easy first time access to BioPerl via functions.
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-BioPerl/DESCR1
-rw-r--r--biology/p5-BioPerl/Makefile25
-rw-r--r--biology/p5-BioPerl/distinfo6
3 files changed, 32 insertions, 0 deletions
diff --git a/biology/p5-BioPerl/DESCR b/biology/p5-BioPerl/DESCR
new file mode 100644
index 00000000000..3118a8d6a15
--- /dev/null
+++ b/biology/p5-BioPerl/DESCR
@@ -0,0 +1 @@
+Easy first time access to BioPerl via functions.
diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile
new file mode 100644
index 00000000000..b44c67eb529
--- /dev/null
+++ b/biology/p5-BioPerl/Makefile
@@ -0,0 +1,25 @@
+# $NetBSD: Makefile,v 1.1 2017/05/07 13:57:12 mef Exp $
+
+DISTNAME= BioPerl-1.007001
+PKGNAME= p5-${DISTNAME}
+CATEGORIES= biology perl5
+MASTER_SITES= http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/
+
+MAINTAINER= pkgsrc-users@NetBSD.org
+HOMEPAGE= http://search.cpan.org/~cjfields/BioPerl/Bio/Perl.pm
+COMMENT= Functional access to BioPerl for people who don't know objects
+LICENSE= ${PERL5_LICENSE}
+
+BUILD_DEPENDS+= p5-Data-Stag-[0-9]*:../../devel/p5-Data-Stag
+
+PERL5_MODULE_TYPE= Module::Build
+PERL5_PACKLIST= auto/Bio/.packlist
+USE_LANGUAGES= # none
+
+REPLACE_PERL+= scripts/utilities/bp_find-blast-matches.pl
+REPLACE_PERL+= scripts/seq/bp_seqcut.pl
+REPLACE_PERL+= scripts/Bio-DB-SeqFeature-Store/bp_seqfeature_gff3.pl
+REPLACE_PERL+= scripts/seq/bp_seqpart.pl
+
+.include "../../lang/perl5/module.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo
new file mode 100644
index 00000000000..5b488129ca8
--- /dev/null
+++ b/biology/p5-BioPerl/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2017/05/07 13:57:12 mef Exp $
+
+SHA1 (BioPerl-1.007001.tar.gz) = 13a3e7a30d68ee32d735921668839eda668771f4
+RMD160 (BioPerl-1.007001.tar.gz) = c433044f47f5827f480836329487bf5780c9f480
+SHA512 (BioPerl-1.007001.tar.gz) = 6ab6af9d8fa74a299870273f2843872af099764997aa1b03f88248502f9ed1b74f4f577b67befa1ae8c18ee2640c029a08a403e2dec5b1cdea41f2b86c82c11b
+Size (BioPerl-1.007001.tar.gz) = 12486953 bytes