Finish move of pymol to py-mol.

5 files changed, 2 insertions, 834 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 96c3da40dbb..fd66b2c92d9 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -1,4 +1,4 @@
-# $NetBSD: Makefile,v 1.26 2005/11/05 01:49:34 minskim Exp $
+# $NetBSD: Makefile,v 1.27 2007/08/12 03:21:06 wiz Exp $
 #
 
 COMMENT=	Software for the biological sciences
@@ -22,7 +22,7 @@ SUBDIR+=	pdbalign
 SUBDIR+=	phylip
 SUBDIR+=	profit
 SUBDIR+=	puzzle
-SUBDIR+=	pymol
+SUBDIR+=	py-mol
 SUBDIR+=	rasmol
 SUBDIR+=	sewer
 SUBDIR+=	stride
diff --git a/biology/pymol/DESCR b/biology/pymol/DESCR
deleted file mode 100644
index 4db4e9dc525..00000000000
--- a/biology/pymol/DESCR
+++ /dev/null
@@ -1,4 +0,0 @@
-PyMOL is a molecular visualization program. It excels at 3D
-visualization of proteins, small molecules, density, surfaces, and
-trajectories. It also includes molecular editing, ray tracing, and
-movies.
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
deleted file mode 100644
index 41b5f4d6869..00000000000
--- a/biology/pymol/Makefile
+++ /dev/null
@@ -1,45 +0,0 @@
-# $NetBSD: Makefile,v 1.8 2007/08/11 18:13:13 joerg Exp $
-
-DISTNAME=	pymol-0_98-src
-PKGNAME=	pymol-0.98
-PKGREVISION=	4
-CATEGORIES=	biology
-MASTER_SITES=	${MASTER_SITE_SOURCEFORGE:=pymol/}
-EXTRACT_SUFX=	.tgz
-
-MAINTAINER=	pkgsrc-users@NetBSD.org
-HOMEPAGE=	http://pymol.sourceforge.net/
-COMMENT=	Molecular Visualization System
-
-PYTHON_VERSIONS_ACCEPTED=	24 23
-
-WRKSRC=		${WRKDIR}/${PKGNAME_NOREV}
-PYDISTUTILSPKG=	yes
-PYBINMODULE=	yes
-PYSETUP=	setup.py
-
-REPLACE_PYTHON=	test/cyg test/run test/show test/win.py
-
-post-install:
-	cd ${WRKSRC} && env ${MAKE_ENV} ${PYTHONBIN} setup2.py
-	${INSTALL_SCRIPT} ${WRKSRC}/pymol.com ${PREFIX}/bin/pymol
-
-.include "../../devel/zlib/buildlink3.mk"
-.include "../../graphics/glu/buildlink3.mk"
-.include "../../graphics/glut/buildlink3.mk"
-.include "../../graphics/png/buildlink3.mk"
-.include "../../math/py-Numeric/buildlink3.mk"
-.include "../../lang/tcl/buildlink3.mk"
-.include "../../x11/tk/buildlink3.mk"
-.include "../../x11/py-Tk/buildlink3.mk"
-.include "../../x11/py-Pmw/buildlink3.mk"
-
-# Note that the website claims this package needs "freeglut", which
-# would mean:
-#  .include "../../graphics/freeglut/buildlink3.mk"
-# However, the package seems to link with "glut" and not with "freeglut",
-# and no other pkgsrc packages seem to use freeglut.
-
-.include "../../lang/python/application.mk"
-.include "../../lang/python/extension.mk"
-.include "../../mk/bsd.pkg.mk"
diff --git a/biology/pymol/PLIST b/biology/pymol/PLIST
deleted file mode 100644
index c3235f80429..00000000000
--- a/biology/pymol/PLIST
+++ /dev/null
@@ -1,778 +0,0 @@
-@comment $NetBSD: PLIST,v 1.2 2005/10/24 20:39:55 rillig Exp $
-bin/pymol
-${PYSITELIB}/chempy/__init__.py
-${PYSITELIB}/chempy/__init__.pyc
-${PYSITELIB}/chempy/__init__.pyo
-${PYSITELIB}/chempy/arc.py
-${PYSITELIB}/chempy/arc.pyc
-${PYSITELIB}/chempy/arc.pyo
-${PYSITELIB}/chempy/bmin/__init__.py
-${PYSITELIB}/chempy/bmin/__init__.pyc
-${PYSITELIB}/chempy/bmin/__init__.pyo
-${PYSITELIB}/chempy/bmin/commands.py
-${PYSITELIB}/chempy/bmin/commands.pyc
-${PYSITELIB}/chempy/bmin/commands.pyo
-${PYSITELIB}/chempy/bmin/realtime.py
-${PYSITELIB}/chempy/bmin/realtime.pyc
-${PYSITELIB}/chempy/bmin/realtime.pyo
-${PYSITELIB}/chempy/bmin/state.py
-${PYSITELIB}/chempy/bmin/state.pyc
-${PYSITELIB}/chempy/bmin/state.pyo
-${PYSITELIB}/chempy/bmin/util.py
-${PYSITELIB}/chempy/bmin/util.pyc
-${PYSITELIB}/chempy/bmin/util.pyo
-${PYSITELIB}/chempy/bond_amber.py
-${PYSITELIB}/chempy/bond_amber.pyc
-${PYSITELIB}/chempy/bond_amber.pyo
-${PYSITELIB}/chempy/bond_mmff.py
-${PYSITELIB}/chempy/bond_mmff.pyc
-${PYSITELIB}/chempy/bond_mmff.pyo
-${PYSITELIB}/chempy/bonds.py
-${PYSITELIB}/chempy/bonds.pyc
-${PYSITELIB}/chempy/bonds.pyo
-${PYSITELIB}/chempy/brick.py
-${PYSITELIB}/chempy/brick.pyc
-${PYSITELIB}/chempy/brick.pyo
-${PYSITELIB}/chempy/cc1.py
-${PYSITELIB}/chempy/cc1.pyc
-${PYSITELIB}/chempy/cc1.pyo
-${PYSITELIB}/chempy/cex.py
-${PYSITELIB}/chempy/cex.pyc
-${PYSITELIB}/chempy/cex.pyo
-${PYSITELIB}/chempy/champ/__init__.py
-${PYSITELIB}/chempy/champ/__init__.pyc
-${PYSITELIB}/chempy/champ/__init__.pyo
-${PYSITELIB}/chempy/champ/_champ.so
-${PYSITELIB}/chempy/champ/amber99.py
-${PYSITELIB}/chempy/champ/amber99.pyc
-${PYSITELIB}/chempy/champ/amber99.pyo
-${PYSITELIB}/chempy/champ/assign.py
-${PYSITELIB}/chempy/champ/assign.pyc
-${PYSITELIB}/chempy/champ/assign.pyo
-${PYSITELIB}/chempy/champ/formal_charges.py
-${PYSITELIB}/chempy/champ/formal_charges.pyc
-${PYSITELIB}/chempy/champ/formal_charges.pyo
-${PYSITELIB}/chempy/charge.py
-${PYSITELIB}/chempy/charge.pyc
-${PYSITELIB}/chempy/charge.pyo
-${PYSITELIB}/chempy/cpv.py
-${PYSITELIB}/chempy/cpv.pyc
-${PYSITELIB}/chempy/cpv.pyo
-${PYSITELIB}/chempy/dictdb.py
-${PYSITELIB}/chempy/dictdb.pyc
-${PYSITELIB}/chempy/dictdb.pyo
-${PYSITELIB}/chempy/fast/__init__.py
-${PYSITELIB}/chempy/fast/__init__.pyc
-${PYSITELIB}/chempy/fast/__init__.pyo
-${PYSITELIB}/chempy/fragments/__init__.py
-${PYSITELIB}/chempy/fragments/__init__.pyc
-${PYSITELIB}/chempy/fragments/__init__.pyo
-${PYSITELIB}/chempy/gamess1.py
-${PYSITELIB}/chempy/gamess1.pyc
-${PYSITELIB}/chempy/gamess1.pyo
-${PYSITELIB}/chempy/gms.py
-${PYSITELIB}/chempy/gms.pyc
-${PYSITELIB}/chempy/gms.pyo
-${PYSITELIB}/chempy/hetatm.py
-${PYSITELIB}/chempy/hetatm.pyc
-${PYSITELIB}/chempy/hetatm.pyo
-${PYSITELIB}/chempy/io.py
-${PYSITELIB}/chempy/io.pyc
-${PYSITELIB}/chempy/io.pyo
-${PYSITELIB}/chempy/lst.py
-${PYSITELIB}/chempy/lst.pyc
-${PYSITELIB}/chempy/lst.pyo
-${PYSITELIB}/chempy/mae.py
-${PYSITELIB}/chempy/mae.pyc
-${PYSITELIB}/chempy/mae.pyo
-${PYSITELIB}/chempy/map.py
-${PYSITELIB}/chempy/map.pyc
-${PYSITELIB}/chempy/map.pyo
-${PYSITELIB}/chempy/mass.py
-${PYSITELIB}/chempy/mass.pyc
-${PYSITELIB}/chempy/mass.pyo
-${PYSITELIB}/chempy/mmd.py
-${PYSITELIB}/chempy/mmd.pyc
-${PYSITELIB}/chempy/mmd.pyo
-${PYSITELIB}/chempy/models.py
-${PYSITELIB}/chempy/models.pyc
-${PYSITELIB}/chempy/models.pyo
-${PYSITELIB}/chempy/mol.py
-${PYSITELIB}/chempy/mol.pyc
-${PYSITELIB}/chempy/mol.pyo
-${PYSITELIB}/chempy/neighbor.py
-${PYSITELIB}/chempy/neighbor.pyc
-${PYSITELIB}/chempy/neighbor.pyo
-${PYSITELIB}/chempy/pdb.py
-${PYSITELIB}/chempy/pdb.pyc
-${PYSITELIB}/chempy/pdb.pyo
-${PYSITELIB}/chempy/pkl.py
-${PYSITELIB}/chempy/pkl.pyc
-${PYSITELIB}/chempy/pkl.pyo
-${PYSITELIB}/chempy/place.py
-${PYSITELIB}/chempy/place.pyc
-${PYSITELIB}/chempy/place.pyo
-${PYSITELIB}/chempy/protein.py
-${PYSITELIB}/chempy/protein.pyc
-${PYSITELIB}/chempy/protein.pyo
-${PYSITELIB}/chempy/protein_amber.py
-${PYSITELIB}/chempy/protein_amber.pyc
-${PYSITELIB}/chempy/protein_amber.pyo
-${PYSITELIB}/chempy/protein_amber99.py
-${PYSITELIB}/chempy/protein_amber99.pyc
-${PYSITELIB}/chempy/protein_amber99.pyo
-${PYSITELIB}/chempy/protein_mmff.py
-${PYSITELIB}/chempy/protein_mmff.pyc
-${PYSITELIB}/chempy/protein_mmff.pyo
-${PYSITELIB}/chempy/protein_residues.py
-${PYSITELIB}/chempy/protein_residues.pyc
-${PYSITELIB}/chempy/protein_residues.pyo
-${PYSITELIB}/chempy/sdf.py
-${PYSITELIB}/chempy/sdf.pyc
-${PYSITELIB}/chempy/sdf.pyo
-${PYSITELIB}/chempy/solvate.py
-${PYSITELIB}/chempy/solvate.pyc
-${PYSITELIB}/chempy/solvate.pyo
-${PYSITELIB}/chempy/tinker/__init__.py
-${PYSITELIB}/chempy/tinker/__init__.pyc
-${PYSITELIB}/chempy/tinker/__init__.pyo
-${PYSITELIB}/chempy/tinker/amber.py
-${PYSITELIB}/chempy/tinker/amber.pyc
-${PYSITELIB}/chempy/tinker/amber.pyo
-${PYSITELIB}/chempy/tinker/keyword.py
-${PYSITELIB}/chempy/tinker/keyword.pyc
-${PYSITELIB}/chempy/tinker/keyword.pyo
-${PYSITELIB}/chempy/tinker/realtime.py
-${PYSITELIB}/chempy/tinker/realtime.pyc
-${PYSITELIB}/chempy/tinker/realtime.pyo
-${PYSITELIB}/chempy/tinker/state.py
-${PYSITELIB}/chempy/tinker/state.pyc
-${PYSITELIB}/chempy/tinker/state.pyo
-${PYSITELIB}/chempy/water_amber.py
-${PYSITELIB}/chempy/water_amber.pyc
-${PYSITELIB}/chempy/water_amber.pyo
-${PYSITELIB}/chempy/water_residues.py
-${PYSITELIB}/chempy/water_residues.pyc
-${PYSITELIB}/chempy/water_residues.pyo
-${PYSITELIB}/chempy/xyz.py
-${PYSITELIB}/chempy/xyz.pyc
-${PYSITELIB}/chempy/xyz.pyo
-${PYSITELIB}/pmg_tk/ColorEditor.py
-${PYSITELIB}/pmg_tk/ColorEditor.pyc
-${PYSITELIB}/pmg_tk/ColorEditor.pyo
-${PYSITELIB}/pmg_tk/Demo.py
-${PYSITELIB}/pmg_tk/Demo.pyc
-${PYSITELIB}/pmg_tk/Demo.pyo
-${PYSITELIB}/pmg_tk/PMGApp.py
-${PYSITELIB}/pmg_tk/PMGApp.pyc
-${PYSITELIB}/pmg_tk/PMGApp.pyo
-${PYSITELIB}/pmg_tk/SetEditor.py
-${PYSITELIB}/pmg_tk/SetEditor.pyc
-${PYSITELIB}/pmg_tk/SetEditor.pyo
-${PYSITELIB}/pmg_tk/Setting.py
-${PYSITELIB}/pmg_tk/Setting.pyc
-${PYSITELIB}/pmg_tk/Setting.pyo
-${PYSITELIB}/pmg_tk/__init__.py
-${PYSITELIB}/pmg_tk/__init__.pyc
-${PYSITELIB}/pmg_tk/__init__.pyo
-${PYSITELIB}/pmg_tk/skins/__init__.py
-${PYSITELIB}/pmg_tk/skins/__init__.pyc
-${PYSITELIB}/pmg_tk/skins/__init__.pyo
-${PYSITELIB}/pmg_tk/skins/normal/__init__.py
-${PYSITELIB}/pmg_tk/skins/normal/__init__.pyc
-${PYSITELIB}/pmg_tk/skins/normal/__init__.pyo
-${PYSITELIB}/pmg_tk/skins/normal/builder.py
-${PYSITELIB}/pmg_tk/skins/normal/builder.pyc
-${PYSITELIB}/pmg_tk/skins/normal/builder.pyo
-${PYSITELIB}/pmg_tk/startup/__init__.py
-${PYSITELIB}/pmg_tk/startup/__init__.pyc
-${PYSITELIB}/pmg_tk/startup/__init__.pyo
-${PYSITELIB}/pmg_tk/startup/apbs_tools.py
-${PYSITELIB}/pmg_tk/startup/apbs_tools.pyc
-${PYSITELIB}/pmg_tk/startup/apbs_tools.pyo
-${PYSITELIB}/pmg_tk/startup/remote_pdb_load.py
-${PYSITELIB}/pmg_tk/startup/remote_pdb_load.pyc
-${PYSITELIB}/pmg_tk/startup/remote_pdb_load.pyo
-${PYSITELIB}/pmg_wx/__init__.py
-${PYSITELIB}/pmg_wx/__init__.pyc
-${PYSITELIB}/pmg_wx/__init__.pyo
-${PYSITELIB}/pymol/ExtensionClass.so
-${PYSITELIB}/pymol/__init__.py
-${PYSITELIB}/pymol/__init__.pyc
-${PYSITELIB}/pymol/__init__.pyo
-${PYSITELIB}/pymol/_cmd.so
-${PYSITELIB}/pymol/callback.py
-${PYSITELIB}/pymol/callback.pyc
-${PYSITELIB}/pymol/callback.pyo
-${PYSITELIB}/pymol/cgo.py
-${PYSITELIB}/pymol/cgo.pyc
-${PYSITELIB}/pymol/cgo.pyo
-${PYSITELIB}/pymol/cmd.py
-${PYSITELIB}/pymol/cmd.pyc
-${PYSITELIB}/pymol/cmd.pyo
-${PYSITELIB}/pymol/commanding.py
-${PYSITELIB}/pymol/commanding.pyc
-${PYSITELIB}/pymol/commanding.pyo
-${PYSITELIB}/pymol/contrib.py
-${PYSITELIB}/pymol/contrib.pyc
-${PYSITELIB}/pymol/contrib.pyo
-${PYSITELIB}/pymol/controlling.py
-${PYSITELIB}/pymol/controlling.pyc
-${PYSITELIB}/pymol/controlling.pyo
-${PYSITELIB}/pymol/creating.py
-${PYSITELIB}/pymol/creating.pyc
-${PYSITELIB}/pymol/creating.pyo
-${PYSITELIB}/pymol/editing.py
-${PYSITELIB}/pymol/editing.pyc
-${PYSITELIB}/pymol/editing.pyo
-${PYSITELIB}/pymol/editor.py
-${PYSITELIB}/pymol/editor.pyc
-${PYSITELIB}/pymol/editor.pyo
-${PYSITELIB}/pymol/experimenting.py
-${PYSITELIB}/pymol/experimenting.pyc
-${PYSITELIB}/pymol/experimenting.pyo
-${PYSITELIB}/pymol/exporting.py
-${PYSITELIB}/pymol/exporting.pyc
-${PYSITELIB}/pymol/exporting.pyo
-${PYSITELIB}/pymol/externing.py
-${PYSITELIB}/pymol/externing.pyc
-${PYSITELIB}/pymol/externing.pyo
-${PYSITELIB}/pymol/fitting.py
-${PYSITELIB}/pymol/fitting.pyc
-${PYSITELIB}/pymol/fitting.pyo
-${PYSITELIB}/pymol/helping.py
-${PYSITELIB}/pymol/helping.pyc
-${PYSITELIB}/pymol/helping.pyo
-${PYSITELIB}/pymol/importing.py
-${PYSITELIB}/pymol/importing.pyc
-${PYSITELIB}/pymol/importing.pyo
-${PYSITELIB}/pymol/invocation.py
-${PYSITELIB}/pymol/invocation.pyc
-${PYSITELIB}/pymol/invocation.pyo
-${PYSITELIB}/pymol/m4x.py
-${PYSITELIB}/pymol/m4x.pyc
-${PYSITELIB}/pymol/m4x.pyo
-${PYSITELIB}/pymol/menu.py
-${PYSITELIB}/pymol/menu.pyc
-${PYSITELIB}/pymol/menu.pyo
-${PYSITELIB}/pymol/movie.py
-${PYSITELIB}/pymol/movie.pyc
-${PYSITELIB}/pymol/movie.pyo
-${PYSITELIB}/pymol/moving.py
-${PYSITELIB}/pymol/moving.pyc
-${PYSITELIB}/pymol/moving.pyo
-${PYSITELIB}/pymol/opengl/__init__.py
-${PYSITELIB}/pymol/opengl/__init__.pyc
-${PYSITELIB}/pymol/opengl/__init__.pyo
-${PYSITELIB}/pymol/opengl/gl/__init__.py
-${PYSITELIB}/pymol/opengl/gl/__init__.pyc
-${PYSITELIB}/pymol/opengl/gl/__init__.pyo
-${PYSITELIB}/pymol/opengl/gl/_opengl.so
-${PYSITELIB}/pymol/opengl/gl/_opengl_num.so
-${PYSITELIB}/pymol/opengl/gl/glconst.py
-${PYSITELIB}/pymol/opengl/gl/glconst.pyc
-${PYSITELIB}/pymol/opengl/gl/glconst.pyo
-${PYSITELIB}/pymol/opengl/gl/openglutil.so
-${PYSITELIB}/pymol/opengl/gl/openglutil_num.so
-${PYSITELIB}/pymol/opengl/glu/__init__.py
-${PYSITELIB}/pymol/opengl/glu/__init__.pyc
-${PYSITELIB}/pymol/opengl/glu/__init__.pyo
-${PYSITELIB}/pymol/opengl/glu/_glu.so
-${PYSITELIB}/pymol/opengl/glu/_glu_num.so
-${PYSITELIB}/pymol/opengl/glu/gluconst.py
-${PYSITELIB}/pymol/opengl/glu/gluconst.pyc
-${PYSITELIB}/pymol/opengl/glu/gluconst.pyo
-${PYSITELIB}/pymol/opengl/glut/__init__.py
-${PYSITELIB}/pymol/opengl/glut/__init__.pyc
-${PYSITELIB}/pymol/opengl/glut/__init__.pyo
-${PYSITELIB}/pymol/opengl/glut/_glut.so
-${PYSITELIB}/pymol/opengl/glut/glutconst.py
-${PYSITELIB}/pymol/opengl/glut/glutconst.pyc
-${PYSITELIB}/pymol/opengl/glut/glutconst.pyo
-${PYSITELIB}/pymol/parser.py
-${PYSITELIB}/pymol/parser.pyc
-${PYSITELIB}/pymol/parser.pyo
-${PYSITELIB}/pymol/parsing.py
-${PYSITELIB}/pymol/parsing.pyc
-${PYSITELIB}/pymol/parsing.pyo
-${PYSITELIB}/pymol/povray.py
-${PYSITELIB}/pymol/povray.pyc
-${PYSITELIB}/pymol/povray.pyo
-${PYSITELIB}/pymol/preset.py
-${PYSITELIB}/pymol/preset.pyc
-${PYSITELIB}/pymol/preset.pyo
-${PYSITELIB}/pymol/pymol_path/LICENSE
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ace.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/acetylene.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ala.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/arg.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/asn.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/asp.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/benzene.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/butane.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_ala.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_arg.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_asn.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_asp.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_cys.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_gln.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_glu.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_gly.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_hid.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_hie.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_hip.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_his.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_ile.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_leu.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_lys.pkl
-${PYSITELIB}/pymol/pymol_path/data/chempy/fragments/ct_met.pkl
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-${PYSITELIB}/pymol/pymol_path/test/ref/C0080create.log
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-${PYSITELIB}/pymol/pymol_path/test/ref/C0150alter.log
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-${PYSITELIB}/pymol/pymol_path/test/ref/C0202help_python.log
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-${PYSITELIB}/pymol/pymol_path/test/ref/C1040editing.log
-${PYSITELIB}/pymol/pymol_path/test/ref/C1050fitting.log
-${PYSITELIB}/pymol/pymol_path/test/ref/C1060controlling.log
-${PYSITELIB}/pymol/pymol_path/test/ref/C1070exporting.log
-${PYSITELIB}/pymol/pymol_path/test/ref/C1080isomore.log
-${PYSITELIB}/pymol/pymol_path/test/ref/C1090coulomb.log
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-${PYSITELIB}/pymol/pymol_path/test/ref/C1100do.log
-${PYSITELIB}/pymol/pymol_path/test/ref/L0010ccp4read.log
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-${PYSITELIB}/pymol/pymol_path/test/ref/L0030isomesh.log
-${PYSITELIB}/pymol/pymol_path/test/ref/L0040isomesh2.log
-${PYSITELIB}/pymol/pymol_path/test/ref/L0100isomisc.log
-${PYSITELIB}/pymol/pymol_path/test/ref/L0200electro.log
-${PYSITELIB}/pymol/pymol_path/test/ref/T01.log
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-${PYSITELIB}/pymol/pymol_path/test/show
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-${PYSITELIB}/pymol/pymol_path/test/vdiff
-${PYSITELIB}/pymol/pymol_path/test/win.py
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-${PYSITELIB}/pymol/querying.pyc
-${PYSITELIB}/pymol/querying.pyo
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-${PYSITELIB}/pymol/rpc.pyc
-${PYSITELIB}/pymol/rpc.pyo
-${PYSITELIB}/pymol/selecting.py
-${PYSITELIB}/pymol/selecting.pyc
-${PYSITELIB}/pymol/selecting.pyo
-${PYSITELIB}/pymol/selector.py
-${PYSITELIB}/pymol/selector.pyc
-${PYSITELIB}/pymol/selector.pyo
-${PYSITELIB}/pymol/setting.py
-${PYSITELIB}/pymol/setting.pyc
-${PYSITELIB}/pymol/setting.pyo
-${PYSITELIB}/pymol/sglite.so
-${PYSITELIB}/pymol/shortcut.py
-${PYSITELIB}/pymol/shortcut.pyc
-${PYSITELIB}/pymol/shortcut.pyo
-${PYSITELIB}/pymol/util.py
-${PYSITELIB}/pymol/util.pyc
-${PYSITELIB}/pymol/util.pyo
-${PYSITELIB}/pymol/vfont.py
-${PYSITELIB}/pymol/vfont.pyc
-${PYSITELIB}/pymol/vfont.pyo
-${PYSITELIB}/pymol/viewing.py
-${PYSITELIB}/pymol/viewing.pyc
-${PYSITELIB}/pymol/viewing.pyo
-${PYSITELIB}/pymol/wizard/__init__.py
-${PYSITELIB}/pymol/wizard/__init__.pyc
-${PYSITELIB}/pymol/wizard/__init__.pyo
-${PYSITELIB}/pymol/wizard/annotation.py
-${PYSITELIB}/pymol/wizard/annotation.pyc
-${PYSITELIB}/pymol/wizard/annotation.pyo
-${PYSITELIB}/pymol/wizard/appearance.py
-${PYSITELIB}/pymol/wizard/appearance.pyc
-${PYSITELIB}/pymol/wizard/appearance.pyo
-${PYSITELIB}/pymol/wizard/benchmark.py
-${PYSITELIB}/pymol/wizard/benchmark.pyc
-${PYSITELIB}/pymol/wizard/benchmark.pyo
-${PYSITELIB}/pymol/wizard/charge.py
-${PYSITELIB}/pymol/wizard/charge.pyc
-${PYSITELIB}/pymol/wizard/charge.pyo
-${PYSITELIB}/pymol/wizard/cleanup.py
-${PYSITELIB}/pymol/wizard/cleanup.pyc
-${PYSITELIB}/pymol/wizard/cleanup.pyo
-${PYSITELIB}/pymol/wizard/demo.py
-${PYSITELIB}/pymol/wizard/demo.pyc
-${PYSITELIB}/pymol/wizard/demo.pyo
-${PYSITELIB}/pymol/wizard/density.py
-${PYSITELIB}/pymol/wizard/density.pyc
-${PYSITELIB}/pymol/wizard/density.pyo
-${PYSITELIB}/pymol/wizard/distance.py
-${PYSITELIB}/pymol/wizard/distance.pyc
-${PYSITELIB}/pymol/wizard/distance.pyo
-${PYSITELIB}/pymol/wizard/fedora.py
-${PYSITELIB}/pymol/wizard/fedora.pyc
-${PYSITELIB}/pymol/wizard/fedora.pyo
-${PYSITELIB}/pymol/wizard/filter.py
-${PYSITELIB}/pymol/wizard/filter.pyc
-${PYSITELIB}/pymol/wizard/filter.pyo
-${PYSITELIB}/pymol/wizard/label.py
-${PYSITELIB}/pymol/wizard/label.pyc
-${PYSITELIB}/pymol/wizard/label.pyo
-${PYSITELIB}/pymol/wizard/measurement.py
-${PYSITELIB}/pymol/wizard/measurement.pyc
-${PYSITELIB}/pymol/wizard/measurement.pyo
-${PYSITELIB}/pymol/wizard/message.py
-${PYSITELIB}/pymol/wizard/message.pyc
-${PYSITELIB}/pymol/wizard/message.pyo
-${PYSITELIB}/pymol/wizard/mutagenesis.py
-${PYSITELIB}/pymol/wizard/mutagenesis.pyc
-${PYSITELIB}/pymol/wizard/mutagenesis.pyo
-${PYSITELIB}/pymol/wizard/pair_fit.py
-${PYSITELIB}/pymol/wizard/pair_fit.pyc
-${PYSITELIB}/pymol/wizard/pair_fit.pyo
-${PYSITELIB}/pymol/wizard/renaming.py
-${PYSITELIB}/pymol/wizard/renaming.pyc
-${PYSITELIB}/pymol/wizard/renaming.pyo
-${PYSITELIB}/pymol/wizard/sculpting.py
-${PYSITELIB}/pymol/wizard/sculpting.pyc
-${PYSITELIB}/pymol/wizard/sculpting.pyo
-${PYSITELIB}/pymol/wizard/security.py
-${PYSITELIB}/pymol/wizard/security.pyc
-${PYSITELIB}/pymol/wizard/security.pyo
-${PYSITELIB}/pymol/wizarding.py
-${PYSITELIB}/pymol/wizarding.pyc
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-${PYSITELIB}/pymol/xray.py
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-${PYSITELIB}/pymol/xray.pyo
-${PYSITELIB}/pymol/xwin.py
-${PYSITELIB}/pymol/xwin.pyc
-${PYSITELIB}/pymol/xwin.pyo
-@dirrm ${PYSITELIB}/pymol/wizard
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/ref
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/inp
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/dat
-@dirrm ${PYSITELIB}/pymol/pymol_path/test
-@dirrm ${PYSITELIB}/pymol/pymol_path/scripts/metaphorics
-@dirrm ${PYSITELIB}/pymol/pymol_path/scripts
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/package/redhat
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/package
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/launching
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/devel
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/cookbook
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/chempy
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/tut
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pymol/matrices
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pymol
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps/builder
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/demo
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/tinker
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/sidechains
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/fragments
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy
-@dirrm ${PYSITELIB}/pymol/pymol_path/data
-@dirrm ${PYSITELIB}/pymol/pymol_path
-@dirrm ${PYSITELIB}/pymol/opengl/glut
-@dirrm ${PYSITELIB}/pymol/opengl/glu
-@dirrm ${PYSITELIB}/pymol/opengl/gl
-@dirrm ${PYSITELIB}/pymol/opengl
-@dirrm ${PYSITELIB}/pymol
-@dirrm ${PYSITELIB}/pmg_wx
-@dirrm ${PYSITELIB}/pmg_tk/startup
-@dirrm ${PYSITELIB}/pmg_tk/skins/normal
-@dirrm ${PYSITELIB}/pmg_tk/skins
-@dirrm ${PYSITELIB}/pmg_tk
-@dirrm ${PYSITELIB}/chempy/tinker
-@dirrm ${PYSITELIB}/chempy/fragments
-@dirrm ${PYSITELIB}/chempy/fast
-@dirrm ${PYSITELIB}/chempy/champ
-@dirrm ${PYSITELIB}/chempy/bmin
-@dirrm ${PYSITELIB}/chempy
diff --git a/biology/pymol/distinfo b/biology/pymol/distinfo
deleted file mode 100644
index b23867bcecc..00000000000
--- a/biology/pymol/distinfo
+++ /dev/null
@@ -1,5 +0,0 @@
-$NetBSD: distinfo,v 1.1 2005/10/07 19:41:07 perry Exp $
-
-SHA1 (pymol-0_98-src.tgz) = 7140eb0478d41705ee2affb6527f7cacd0ff9ace
-RMD160 (pymol-0_98-src.tgz) = 0aa31ffc1fb85e1c03320fb806a76b315a847bbd
-Size (pymol-0_98-src.tgz) = 3033733 bytes