Remove @dirrm entries from PLISTs

21 files changed, 21 insertions, 122 deletions

diff --git a/biology/arka/PLIST b/biology/arka/PLIST
index 78344143409..d2b1c109cb4 100644
--- a/biology/arka/PLIST
+++ b/biology/arka/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/arka
 man/man1/arka.1
 share/doc/arka/CHANGES.TXT
@@ -9,6 +9,3 @@ share/doc/arka/TODO.TXT
 share/examples/arka/arkarc
 share/pixmaps/arka_16x16.xpm
 share/pixmaps/arka_32x32.xpm
-@comment in xdg-dirs: @dirrm share/pixmaps
-@dirrm share/examples/arka
-@dirrm share/doc/arka
diff --git a/biology/bioperl/PLIST b/biology/bioperl/PLIST
index 4323bdd8e94..22976d99fe5 100644
--- a/biology/bioperl/PLIST
+++ b/biology/bioperl/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1 2001/10/31 21:27:53 zuntum Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 share/examples/bioperl/blast/out/blastn.2.gz
 share/examples/bioperl/blast/out/blastn.2.wu.gz
 share/examples/bioperl/blast/out/blastp.1.gcg.gz
@@ -72,10 +72,3 @@ share/examples/bioperl/seq/seqs1.pl
 share/examples/bioperl/seq/seqs2.pl
 share/examples/bioperl/seq/seqs3.pl
 share/examples/bioperl/seq/seqtools.pl
-@dirrm share/examples/bioperl/seq
-@dirrm share/examples/bioperl/root_object/vector
-@dirrm share/examples/bioperl/root_object
-@dirrm share/examples/bioperl/blast/seq
-@dirrm share/examples/bioperl/blast/out
-@dirrm share/examples/bioperl/blast
-@dirrm share/examples/bioperl
diff --git a/biology/chemtool/PLIST b/biology/chemtool/PLIST
index b134aa79047..5477380d3f1 100644
--- a/biology/chemtool/PLIST
+++ b/biology/chemtool/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.7 2006/04/17 07:07:13 jlam Exp $
+@comment $NetBSD: PLIST,v 1.8 2009/06/14 17:34:33 joerg Exp $
 bin/chemtool
 bin/cht
 man/man1/chemtool.1
@@ -49,5 +49,3 @@ share/locale/nl/LC_MESSAGES/chemtool.mo
 share/locale/pl/LC_MESSAGES/chemtool.mo
 share/locale/pt_BR/LC_MESSAGES/chemtool.mo
 share/locale/ru/LC_MESSAGES/chemtool.mo
-@dirrm share/examples/chemtool
-@dirrm share/doc/chemtool
diff --git a/biology/clustalw/PLIST b/biology/clustalw/PLIST
index 782c2b99196..637727a70be 100644
--- a/biology/clustalw/PLIST
+++ b/biology/clustalw/PLIST
@@ -1,7 +1,6 @@
-@comment $NetBSD: PLIST,v 1.1 2001/10/31 21:28:00 zuntum Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/clustalw
 share/doc/clustalw/clustalv.doc
 share/doc/clustalw/clustalw.doc
 share/doc/clustalw/clustalw.ms
 share/doc/clustalw/clustalw_help
-@dirrm share/doc/clustalw
diff --git a/biology/coalesce/PLIST b/biology/coalesce/PLIST
index 0ff8c903eaa..37fdbea3ee9 100644
--- a/biology/coalesce/PLIST
+++ b/biology/coalesce/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/30 01:03:56 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/coalesce
 share/doc/coalesce/coalesce.doc
 share/doc/coalesce/errors.doc
@@ -9,5 +9,3 @@ share/examples/coalesce/intree
 share/examples/coalesce/outfile
 share/examples/coalesce/parmfile
 share/examples/coalesce/seedfile
-@dirrm share/examples/coalesce
-@dirrm share/doc/coalesce
diff --git a/biology/fastDNAml/PLIST b/biology/fastDNAml/PLIST
index f7daad5d1c6..e3a27ba1f19 100644
--- a/biology/fastDNAml/PLIST
+++ b/biology/fastDNAml/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2005/05/07 20:54:05 kristerw Exp $
+@comment $NetBSD: PLIST,v 1.3 2009/06/14 17:34:33 joerg Exp $
 bin/ae2dnaml
 bin/bootstrap
 bin/categories
@@ -35,4 +35,3 @@ bin/weights
 bin/weights_categories
 share/doc/fastDNAml/fastDNAml_doc_1.2.txt
 share/doc/fastDNAml/fastDNAml_scripts.txt
-@dirrm share/doc/fastDNAml
diff --git a/biology/fluctuate/PLIST b/biology/fluctuate/PLIST
index 66ae75d4508..8618a0e87dd 100644
--- a/biology/fluctuate/PLIST
+++ b/biology/fluctuate/PLIST
@@ -1,9 +1,7 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/30 01:19:31 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/fluctuate
 share/doc/fluctuate/errors.doc
 share/doc/fluctuate/fluctuate.doc
 share/examples/fluctuate/bestree
 share/examples/fluctuate/infile
 share/examples/fluctuate/outfile
-@dirrm share/examples/fluctuate
-@dirrm share/doc/fluctuate
diff --git a/biology/genesplicer/PLIST b/biology/genesplicer/PLIST
index d3f97e4560c..167ad40599f 100644
--- a/biology/genesplicer/PLIST
+++ b/biology/genesplicer/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/30 01:57:09 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/genesplicer
 share/examples/genesplicer/arabidopsis/acc1.mar
 share/examples/genesplicer/arabidopsis/acc15
@@ -136,13 +136,3 @@ share/examples/genesplicer/training_data_sets/Arabidopsis/exons.dat.nohomologs
 share/examples/genesplicer/training_data_sets/Arabidopsis/seqs.nohomologs
 share/examples/genesplicer/training_data_sets/Human/exons.dat.nohomologs
 share/examples/genesplicer/training_data_sets/Human/seqs.nohomologs
-@dirrm share/examples/genesplicer/training_data_sets/Human
-@dirrm share/examples/genesplicer/training_data_sets/Arabidopsis
-@dirrm share/examples/genesplicer/training_data_sets
-@dirrm share/examples/genesplicer/rice
-@dirrm share/examples/genesplicer/pyoelii
-@dirrm share/examples/genesplicer/malaria
-@dirrm share/examples/genesplicer/human
-@dirrm share/examples/genesplicer/drosophila
-@dirrm share/examples/genesplicer/arabidopsis
-@dirrm share/examples/genesplicer
diff --git a/biology/glimmer/PLIST b/biology/glimmer/PLIST
index 98d3a6f5b7f..dc0d518d1cc 100644
--- a/biology/glimmer/PLIST
+++ b/biology/glimmer/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2003/10/07 18:20:15 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.3 2009/06/14 17:34:33 joerg Exp $
 bin/adjust
 bin/anomaly
 bin/build-icm
@@ -17,5 +17,3 @@ share/doc/glimmer/glimmer2.readme
 share/doc/glimmer/long-orfs.readme
 share/doc/glimmer/run-glimmer2.readme
 share/glimmer/run-glimmer2
-@dirrm share/glimmer
-@dirrm share/doc/glimmer
diff --git a/biology/gp/PLIST b/biology/gp/PLIST
index f4b93eb1c8f..019700ad4fc 100644
--- a/biology/gp/PLIST
+++ b/biology/gp/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/26 03:30:00 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:33 joerg Exp $
 bin/gp_acc
 bin/gp_adjust
 bin/gp_cdndev
@@ -47,4 +47,3 @@ share/examples/genpak/mporfs.seq
 share/examples/genpak/myco.cdn
 share/examples/genpak/sample.seq
 share/examples/genpak/standard.cdn
-@dirrm share/examples/genpak
diff --git a/biology/lucy/PLIST b/biology/lucy/PLIST
index 0fb1792b963..089d1b80837 100644
--- a/biology/lucy/PLIST
+++ b/biology/lucy/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2009/06/12 19:07:29 rillig Exp $
+@comment $NetBSD: PLIST,v 1.3 2009/06/14 17:34:34 joerg Exp $
 bin/lucy
 man/man1/lucy.1
 share/examples/lucy/ARMTM40TR.qul
@@ -14,4 +14,3 @@ share/examples/lucy/lucy.debug
 share/examples/lucy/lucy.ps
 share/examples/lucy/pSPORT1splice
 share/examples/lucy/pSPORT1vector
-@dirrm share/examples/lucy
diff --git a/biology/mopac/PLIST b/biology/mopac/PLIST
index 189be4e5dad..010ed9b5717 100644
--- a/biology/mopac/PLIST
+++ b/biology/mopac/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2008/03/09 17:52:57 tnn Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:34 joerg Exp $
 bin/MOPAC7
 bin/mopac
 share/mopac7/mopac7-man/front
@@ -23,6 +23,3 @@ share/mopac7/sample/test_gre.end
 share/mopac7/sample/test_gre.out
 share/mopac7/sample/test_pol.dat
 share/mopac7/sample/test_pol.out
-@dirrm share/mopac7/sample
-@dirrm share/mopac7/mopac7-man
-@dirrm share/mopac7
diff --git a/biology/mummer/PLIST b/biology/mummer/PLIST
index 7c07fdc68f4..866d16b1daf 100644
--- a/biology/mummer/PLIST
+++ b/biology/mummer/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.6 2008/10/11 22:01:13 schwarz Exp $
+@comment $NetBSD: PLIST,v 1.7 2009/06/14 17:34:34 joerg Exp $
 bin/annotate
 bin/combineMUMs
 bin/delta-filter
@@ -101,9 +101,3 @@ share/mummer/nucmer2xfig
 share/mummer/promer
 share/mummer/run-mummer1
 share/mummer/run-mummer3
-@dirrm share/mummer
-@dirrm share/doc/mummer/web/manual
-@dirrm share/doc/mummer/web/examples/data
-@dirrm share/doc/mummer/web/examples
-@dirrm share/doc/mummer/web
-@dirrm share/doc/mummer
diff --git a/biology/nut/PLIST b/biology/nut/PLIST
index a612c0390d6..5312b21c4a7 100644
--- a/biology/nut/PLIST
+++ b/biology/nut/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.5 2008/01/30 05:43:55 obache Exp $
+@comment $NetBSD: PLIST,v 1.6 2009/06/14 17:34:34 joerg Exp $
 bin/nut
 man/man1/nut.1
 share/nut/FOOD_DES.txt
@@ -6,4 +6,3 @@ share/nut/NUT_DATA.txt
 share/nut/WEIGHT.lib
 share/nut/WEIGHT.txt
 share/nut/sr20.nut
-@dirrm share/nut
diff --git a/biology/phylip/PLIST b/biology/phylip/PLIST
index d8948ce4287..0378c7e77d1 100644
--- a/biology/phylip/PLIST
+++ b/biology/phylip/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2006/07/08 06:33:56 wiz Exp $
+@comment $NetBSD: PLIST,v 1.5 2009/06/14 17:34:34 joerg Exp $
 bin/clique
 bin/consense
 bin/contml
@@ -77,12 +77,10 @@ share/doc/html/phylip/retree.html
 share/doc/html/phylip/seqboot.html
 share/doc/html/phylip/sequence.html
 share/doc/html/phylip/treedist.html
-@dirrm share/doc/html/phylip
 share/fonts/phylip/font1
 share/fonts/phylip/font2
 share/fonts/phylip/font3
 share/fonts/phylip/font4
 share/fonts/phylip/font5
 share/fonts/phylip/font6
-@dirrm share/fonts/phylip
 @unexec ${RMDIR} %D/share/fonts 2> /dev/null || ${TRUE}
diff --git a/biology/profit/PLIST b/biology/profit/PLIST
index e0e1b1507a2..f7cd70dc6ef 100644
--- a/biology/profit/PLIST
+++ b/biology/profit/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 23:18:27 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:34 joerg Exp $
 bin/profit
 share/doc/html/profit/IMG_PARAMS.db
 share/doc/html/profit/ProFit.css
@@ -46,6 +46,3 @@ share/doc/html/profit/node9.html
 share/doc/profit/ProFit.dvi
 share/doc/profit/ProFit.ps
 share/doc/profit/ProFit.tex
-@dirrm share/doc/profit
-@dirrm share/doc/html/profit/l2h32434
-@dirrm share/doc/html/profit
diff --git a/biology/puzzle/PLIST b/biology/puzzle/PLIST
index ff59d506049..7b430af7803 100644
--- a/biology/puzzle/PLIST
+++ b/biology/puzzle/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2003/05/10 23:46:15 jtb Exp $
+@comment $NetBSD: PLIST,v 1.3 2009/06/14 17:34:34 joerg Exp $
 bin/ppuzzle
 bin/puzzle
 share/doc/html/puzzle/ppuzzle.gif
@@ -11,6 +11,3 @@ share/examples/puzzle/atp6.a
 share/examples/puzzle/globin.a
 share/examples/puzzle/marswolf.n
 share/examples/puzzle/primates.b
-@dirrm share/doc/puzzle
-@dirrm share/doc/html/puzzle
-@dirrm share/examples/puzzle
diff --git a/biology/py-mol/PLIST b/biology/py-mol/PLIST
index d22ada57e85..98437661aaa 100644
--- a/biology/py-mol/PLIST
+++ b/biology/py-mol/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2007/08/12 03:19:19 wiz Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:34 joerg Exp $
 bin/pymol
 ${PYSITELIB}/chempy/__init__.py
 ${PYSITELIB}/chempy/__init__.pyc
@@ -733,46 +733,3 @@ ${PYSITELIB}/pymol/xray.pyo
 ${PYSITELIB}/pymol/xwin.py
 ${PYSITELIB}/pymol/xwin.pyc
 ${PYSITELIB}/pymol/xwin.pyo
-@dirrm ${PYSITELIB}/pymol/wizard
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/ref
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/inp
-@dirrm ${PYSITELIB}/pymol/pymol_path/test/dat
-@dirrm ${PYSITELIB}/pymol/pymol_path/test
-@dirrm ${PYSITELIB}/pymol/pymol_path/scripts/metaphorics
-@dirrm ${PYSITELIB}/pymol/pymol_path/scripts
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/package/redhat
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/package
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/launching
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/devel
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/cookbook
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples/chempy
-@dirrm ${PYSITELIB}/pymol/pymol_path/examples
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/tut
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pymol/matrices
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pymol
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps/builder
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk/bitmaps
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/pmg_tk
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/demo
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/tinker
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/sidechains
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy/fragments
-@dirrm ${PYSITELIB}/pymol/pymol_path/data/chempy
-@dirrm ${PYSITELIB}/pymol/pymol_path/data
-@dirrm ${PYSITELIB}/pymol/pymol_path
-@dirrm ${PYSITELIB}/pymol/opengl/glut
-@dirrm ${PYSITELIB}/pymol/opengl/glu
-@dirrm ${PYSITELIB}/pymol/opengl/gl
-@dirrm ${PYSITELIB}/pymol/opengl
-@dirrm ${PYSITELIB}/pymol
-@dirrm ${PYSITELIB}/pmg_wx
-@dirrm ${PYSITELIB}/pmg_tk/startup
-@dirrm ${PYSITELIB}/pmg_tk/skins/normal
-@dirrm ${PYSITELIB}/pmg_tk/skins
-@dirrm ${PYSITELIB}/pmg_tk
-@dirrm ${PYSITELIB}/chempy/tinker
-@dirrm ${PYSITELIB}/chempy/fragments
-@dirrm ${PYSITELIB}/chempy/fast
-@dirrm ${PYSITELIB}/chempy/champ
-@dirrm ${PYSITELIB}/chempy/bmin
-@dirrm ${PYSITELIB}/chempy
diff --git a/biology/rasmol/PLIST b/biology/rasmol/PLIST
index 560b0b48860..5ff63600051 100644
--- a/biology/rasmol/PLIST
+++ b/biology/rasmol/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.4 2005/12/28 14:03:51 joerg Exp $
+@comment $NetBSD: PLIST,v 1.5 2009/06/14 17:34:34 joerg Exp $
 bin/rasmol
 ${IMAKE_MAN_DIR}/rasmol.${IMAKE_MAN_SUFFIX}
 share/doc/rasmol/NOTICE
@@ -15,7 +15,6 @@ share/doc/rasmol/refcardA4.rtf.gz
 share/doc/rasmol/refcardUS.pdf.gz
 share/doc/rasmol/refcardUS.ps.gz
 share/doc/rasmol/refcardUS.rtf.gz
-@dirrm share/doc/rasmol
 share/examples/rasmol/1crn.pdb
 share/examples/rasmol/1gpd.pdb.gz
 share/examples/rasmol/1ldb.pdb.gz
@@ -27,4 +26,3 @@ share/examples/rasmol/7lyz.pdb
 share/examples/rasmol/IUCR9800028.cif
 share/examples/rasmol/asprin.alc
 share/examples/rasmol/pdb2mcg.ent
-@dirrm share/examples/rasmol
diff --git a/biology/sewer/PLIST b/biology/sewer/PLIST
index 8bdda6a408f..d87054e0a55 100644
--- a/biology/sewer/PLIST
+++ b/biology/sewer/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 23:36:34 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:35 joerg Exp $
 share/doc/html/sewer/index.html
 share/doc/html/sewer/align.htm
 share/doc/html/sewer/bookmarklet.htm
@@ -66,7 +66,3 @@ share/doc/html/sewer/styles/unix.css
 share/doc/html/sewer/styles/winie.css
 share/doc/html/sewer/styles/winns.css
 share/doc/html/sewer/tools.htm
-@dirrm share/doc/html/sewer/styles
-@dirrm share/doc/html/sewer/scripts
-@dirrm share/doc/html/sewer/images
-@dirrm share/doc/html/sewer
diff --git a/biology/xylem/PLIST b/biology/xylem/PLIST
index a0dc0796a6f..08bd02f2696 100644
--- a/biology/xylem/PLIST
+++ b/biology/xylem/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 2003/10/04 19:13:30 jschauma Exp $
+@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:35 joerg Exp $
 bin/dbstat
 bin/flat2phyl
 bin/getloc
@@ -47,5 +47,3 @@ share/examples/xylem/sample.ref
 share/examples/xylem/sample.sequential.phylip
 share/examples/xylem/sample.wrp
 share/examples/xylem/testxylem.csh
-@dirrm share/examples/xylem
-@dirrm share/doc/xylem