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authorjtb <jtb@pkgsrc.org>2001-02-25 00:05:39 +0000
committerjtb <jtb@pkgsrc.org>2001-02-25 00:05:39 +0000
commit9e413c1652fc7145352a93310118743cd47fc3b3 (patch)
treede1c7e0d1c212005ad390a73619c0ae3e558a301 /devel/hdf5
parent54a9be8cc965b99a2b49deafe68a9930a98fdea3 (diff)
downloadpkgsrc-9e413c1652fc7145352a93310118743cd47fc3b3.tar.gz
Updated hdf5 to 1.4.0. For further details of changes see
${PREFIX}/share/doc/hdf5/RELEASE.txt. New Features ============ * The Virtual File Layer, VFL, was added to replace the old file drivers. It also provides an API for user defined file drivers. * New features added to snapshots. Use 'snapshot help' to see a complete list of features. * Improved configure to detect if MPIO routines are available when parallel mode is requested. * Added Thread-Safe support. Phase I implemented. See: http://hdf.ncsa.uiuc.edu/HDF5/papers/mthdf/MTHDFpaper.htm for more details. * Added data sieve buffering to raw data I/O path. This is enabled for all VFL drivers except the mpio & core drivers. Setting the sieve buffer size is controlled with the new API function, H5Pset_sieve_buf_size(), and retrieved with H5Pget_sieve_buf_size(). * Added new Virtual File Driver, Stream VFD, to send/receive entire HDF5 files via socket connections. * As parts of VFL, HDF-GASS and HDF-SRB are also added to this release. To find out details, please read INSTALL_VFL file. * Increased maximum number of dimensions for a dataset (H5S_MAX_RANK) from 31 to 32 to align with HDF4 & netCDF. * Added 'query' function to VFL drivers. Also added 'type' parameter to VFL 'read' & 'write' calls, so they are aware of the type of data being accessed in the file. Updated the VFL document also. * A new h4toh5 utility, to convert HDF4 files to analogous HDF5 files. * Added a new array datatype to the datatypes which can be created. Removed "array fields" from compound datatypes (use an array datatype instead). * Parallel HDF5 works correctly with mpich-1.2.1 on Solaris, SGI, Linux. * You can now install the HDF5 documentation using the ``make install-doc'' command. The documentation is installed in the $(prefix)/doc directory where $(prefix) is the prefix specified by the (optional) ``--prefix'' flag during configuration. * HDF5 can operate correctly in the OpenMP environment in a limited way. Check doc/html/TechNotes/openmp-hdf5.html for details.
Diffstat (limited to 'devel/hdf5')
-rw-r--r--devel/hdf5/Makefile62
-rw-r--r--devel/hdf5/files/md54
-rw-r--r--devel/hdf5/files/patch-sum7
-rw-r--r--devel/hdf5/patches/patch-aa16
-rw-r--r--devel/hdf5/pkg/PLIST565
5 files changed, 324 insertions, 330 deletions
diff --git a/devel/hdf5/Makefile b/devel/hdf5/Makefile
index d66035d496c..09e28af953b 100644
--- a/devel/hdf5/Makefile
+++ b/devel/hdf5/Makefile
@@ -1,54 +1,26 @@
-# $NetBSD: Makefile,v 1.4 2001/02/16 14:38:31 wiz Exp $
-#
+# $NetBSD: Makefile,v 1.5 2001/02/25 00:05:39 jtb Exp $
-DISTNAME= hdf5-1.2.2
-CATEGORIES= devel
-MASTER_SITES= ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-1.2.2/src/ \
- ftp://sunsite.doc.ic.ac.uk/packages/HDF5/hdf5-1.2.2/src/
+DISTNAME= hdf5-1.4.0
+CATEGORIES= devel
+MASTER_SITES= ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-1.2.2/src/ \
+ ftp://sunsite.doc.ic.ac.uk/packages/HDF5/hdf5-1.2.2/src/
-MAINTAINER= jtb@netbsd.org
-HOMEPAGE= http://hdf.ncsa.uiuc.edu/HDF5/
-COMMENT= Hierarchical Data Format (version 5)
+MAINTAINER= jtb@netbsd.org
+HOMEPAGE= http://hdf.ncsa.uiuc.edu/HDF5/
+COMMENT= Hierarchical Data Format (version 5)
-DEPENDS+= jpeg-[0-9]*:../../graphics/jpeg
+DEPENDS+= jpeg>=6:../../graphics/jpeg
-GNU_CONFIGURE= YES
-USE_LIBTOOL= YES
-LTCONFIG_OVERRIDE= ${WRKSRC}/bin/ltconfig
+GNU_CONFIGURE= #defined
+USE_LIBTOOL= #defined
+LTCONFIG_OVERRIDE= ${WRKSRC}/bin/ltconfig
post-install:
${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/ADGuide
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/PSandPDF
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/TechNotes
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/Tutor
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/Tutor/Graphics
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/Tutor/examples
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/Tutor/examples/java
- ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/hdf5/XML_DTD
- @(cd ${WRKSRC}/doc/html/; \
- for f in *.html *.txt *.gif *.jpg *.c *.obj h5s.examples ; do \
- ${INSTALL_DATA} $$f ${PREFIX}/share/doc/hdf5; \
- done)
- ${INSTALL_DATA} ${WRKSRC}/doc/html/ADGuide/* \
- ${PREFIX}/share/doc/hdf5/ADGuide
- ${INSTALL_DATA} ${WRKSRC}/doc/html/PSandPDF/* \
- ${PREFIX}/share/doc/hdf5/PSandPDF
- ${INSTALL_DATA} ${WRKSRC}/doc/html/TechNotes/* \
- ${PREFIX}/share/doc/hdf5/TechNotes
- @(cd ${WRKSRC}/doc/html/Tutor; \
- for f in *.html *.txt *.gif *.JPG; do \
- ${INSTALL_DATA} $$f ${PREFIX}/share/doc/hdf5/Tutor/; \
- done)
- ${INSTALL_DATA} ${WRKSRC}/doc/html/Tutor/Graphics/* \
- ${PREFIX}/share/doc/hdf5/Tutor/Graphics/
- @(cd ${WRKSRC}/doc/html/Tutor/examples/ ; \
- for f in *.c *.f90 ; do \
- ${INSTALL_DATA} $$f ${PREFIX}/share/doc/hdf5/Tutor/examples/ ; \
- done)
- ${INSTALL_DATA} ${WRKSRC}/doc/html/Tutor/examples/java/* \
- ${PREFIX}/share/doc/hdf5/Tutor/examples/java/
- ${INSTALL_DATA} ${WRKSRC}/doc/html/XML_DTD/* \
- ${PREFIX}/share/doc/hdf5/XML_DTD
+ ${INSTALL_DATA} ${WRKSRC}/COPYING ${WRKSRC}/README \
+ ${WRKSRC}/RELEASE.txt ${PREFIX}/share/doc/hdf5
+ ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/html/hdf5
+ (cd ${WRKSRC}/doc/html; ${GTAR} cf - . ) | \
+ (cd ${PREFIX}/share/doc/html/hdf5/; ${GTAR} xf - )
.include "../../mk/bsd.pkg.mk"
diff --git a/devel/hdf5/files/md5 b/devel/hdf5/files/md5
index d075acbf8f7..ff99dbf8477 100644
--- a/devel/hdf5/files/md5
+++ b/devel/hdf5/files/md5
@@ -1,3 +1,3 @@
-$NetBSD: md5,v 1.1.1.1 2000/11/24 20:43:02 jtb Exp $
+$NetBSD: md5,v 1.2 2001/02/25 00:05:40 jtb Exp $
-MD5 (hdf5-1.2.2.tar.gz) = c11bd387b0ae556e70f16422a91b6a99
+MD5 (hdf5-1.4.0.tar.gz) = acc74bbe3ca2d0c85d2ad88116681dc5
diff --git a/devel/hdf5/files/patch-sum b/devel/hdf5/files/patch-sum
index 065883028f0..2e1aeed7292 100644
--- a/devel/hdf5/files/patch-sum
+++ b/devel/hdf5/files/patch-sum
@@ -1,3 +1,6 @@
-$NetBSD: patch-sum,v 1.1 2001/01/19 20:46:49 jtb Exp $
+$NetBSD: patch-sum,v 1.2 2001/02/25 00:05:40 jtb Exp $
-MD5 (patch-aa) = 79d16e59ffcc51db50258ee89053f18a
+This placeholder file is generated by the ``makepatchsum'' target
+whenever the patches directory is empty or missing. Its purpose
+is to ensure that the presence of any obsolete patches will cause
+the proper error to be emitted at build time.
diff --git a/devel/hdf5/patches/patch-aa b/devel/hdf5/patches/patch-aa
deleted file mode 100644
index 306721a4dcb..00000000000
--- a/devel/hdf5/patches/patch-aa
+++ /dev/null
@@ -1,16 +0,0 @@
-$NetBSD: patch-aa,v 1.1 2001/01/19 20:46:50 jtb Exp $
-
---- tools/h5debug.c.orig Thu Jan 11 23:18:07 2001
-+++ tools/h5debug.c
-@@ -56,6 +56,11 @@
- herr_t status = SUCCEED;
- haddr_t extra;
-
-+ if (argc < 2) {
-+ fprintf(stderr, "Usage: %s FILENAME [OFFSET]\n", argv[0]);
-+ exit (1);
-+ }
-+
- /*
- * Open the file and get the file descriptor.
- */
diff --git a/devel/hdf5/pkg/PLIST b/devel/hdf5/pkg/PLIST
index fef9eea32e2..984e856ae85 100644
--- a/devel/hdf5/pkg/PLIST
+++ b/devel/hdf5/pkg/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.2 2001/01/04 15:10:28 agc Exp $
+@comment $NetBSD: PLIST,v 1.3 2001/02/25 00:05:40 jtb Exp $
bin/h5debug
bin/h5dump
bin/h5import
@@ -9,23 +9,32 @@ include/H5Apublic.h
include/H5Bpublic.h
include/H5Dpublic.h
include/H5Epublic.h
-include/H5FLpublic.h
+include/H5FDcore.h
+include/H5FDdpss.h
+include/H5FDfamily.h
+include/H5FDgass.h
+include/H5FDlog.h
+include/H5FDmpio.h
+include/H5FDmulti.h
+include/H5FDpublic.h
+include/H5FDsec2.h
+include/H5FDsrb.h
+include/H5FDstdio.h
+include/H5FDstream.h
include/H5Fpublic.h
include/H5Gpublic.h
include/H5HGpublic.h
include/H5HLpublic.h
include/H5Ipublic.h
-include/H5MFpublic.h
include/H5MMpublic.h
include/H5Opublic.h
include/H5Ppublic.h
-include/H5RApublic.h
include/H5Rpublic.h
include/H5Spublic.h
include/H5Tpublic.h
include/H5Zpublic.h
include/H5api_adpt.h
-include/H5config.h
+include/H5pubconf.h
include/H5public.h
include/hdf5.h
lib/libhdf5.a
@@ -34,264 +43,290 @@ lib/libhdf5.settings
lib/libhdf5.so
lib/libhdf5.so.0
lib/libhdf5.so.0.0
-share/doc/hdf5/ADGuide.html
-share/doc/hdf5/ADGuide/H4toH5Mapping.pdf
-share/doc/hdf5/Attributes.html
-share/doc/hdf5/Caching.html
-share/doc/hdf5/Chunk_f1.gif
-share/doc/hdf5/Chunk_f2.gif
-share/doc/hdf5/Chunk_f3.gif
-share/doc/hdf5/Chunk_f4.gif
-share/doc/hdf5/Chunk_f5.gif
-share/doc/hdf5/Chunk_f6.gif
-share/doc/hdf5/Chunking.html
-share/doc/hdf5/Copyright.html
-share/doc/hdf5/Datasets.html
-share/doc/hdf5/Dataspaces.html
-share/doc/hdf5/Datatypes.html
-share/doc/hdf5/Debugging.html
-share/doc/hdf5/EnumMap.gif
-share/doc/hdf5/Environment.html
-share/doc/hdf5/Errors.html
-share/doc/hdf5/FF-IH_FileGroup.gif
-share/doc/hdf5/FF-IH_FileObject.gif
-share/doc/hdf5/Files.html
-share/doc/hdf5/Filters.html
-share/doc/hdf5/Glossary.html
-share/doc/hdf5/Groups.html
-share/doc/hdf5/H5.api_map.html
-share/doc/hdf5/H5.format.html
-share/doc/hdf5/H5.intro.html
-share/doc/hdf5/H5.sample_code.html
-share/doc/hdf5/H5.user.html
-share/doc/hdf5/IH_map1.gif
-share/doc/hdf5/IH_map2.gif
-share/doc/hdf5/IH_map3.gif
-share/doc/hdf5/IH_map4.gif
-share/doc/hdf5/IH_mapFoot.gif
-share/doc/hdf5/IH_mapHead.gif
-share/doc/hdf5/ImageSpec.html
-share/doc/hdf5/MountingFiles.html
-share/doc/hdf5/NCSAfooterlogo.gif
-share/doc/hdf5/PSandPDF/H5-Rx.x.DocSet.pdf
-share/doc/hdf5/PSandPDF/index.html
-share/doc/hdf5/PaletteExample1.gif
-share/doc/hdf5/Palettes.fm.anc.gif
-share/doc/hdf5/Performance.html
-share/doc/hdf5/Properties.html
-share/doc/hdf5/RM_H5.html
-share/doc/hdf5/RM_H5A.html
-share/doc/hdf5/RM_H5D.html
-share/doc/hdf5/RM_H5E.html
-share/doc/hdf5/RM_H5F.html
-share/doc/hdf5/RM_H5Front.html
-share/doc/hdf5/RM_H5G.html
-share/doc/hdf5/RM_H5I.html
-share/doc/hdf5/RM_H5P.html
-share/doc/hdf5/RM_H5R.html
-share/doc/hdf5/RM_H5RA.html
-share/doc/hdf5/RM_H5S.html
-share/doc/hdf5/RM_H5T.html
-share/doc/hdf5/RM_H5Z.html
-share/doc/hdf5/Ragged.html
-share/doc/hdf5/References.html
-share/doc/hdf5/TechNotes.html
-share/doc/hdf5/TechNotes/BigDataSmMach.html
-share/doc/hdf5/TechNotes/ChStudy_1000x1000.gif
-share/doc/hdf5/TechNotes/ChStudy_250x250.gif
-share/doc/hdf5/TechNotes/ChStudy_499x499.gif
-share/doc/hdf5/TechNotes/ChStudy_5000x1000.gif
-share/doc/hdf5/TechNotes/ChStudy_500x500.gif
-share/doc/hdf5/TechNotes/ChStudy_p1.gif
-share/doc/hdf5/TechNotes/ChunkingStudy.html
-share/doc/hdf5/TechNotes/CodeReview.html
-share/doc/hdf5/TechNotes/ExternalFiles.html
-share/doc/hdf5/TechNotes/FreeLists.html
-share/doc/hdf5/TechNotes/H4-H5Compat.html
-share/doc/hdf5/TechNotes/HeapMgmt.html
-share/doc/hdf5/TechNotes/IOPipe.html
-share/doc/hdf5/TechNotes/LibMaint.html
-share/doc/hdf5/TechNotes/MemoryMgmt.html
-share/doc/hdf5/TechNotes/MoveDStruct.html
-share/doc/hdf5/TechNotes/NamingScheme.html
-share/doc/hdf5/TechNotes/ObjectHeader.html
-share/doc/hdf5/TechNotes/RawDStorage.html
-share/doc/hdf5/TechNotes/SymbolTables.html
-share/doc/hdf5/TechNotes/Version.html
-share/doc/hdf5/TechNotes/pipe1.gif
-share/doc/hdf5/TechNotes/pipe2.gif
-share/doc/hdf5/TechNotes/pipe3.gif
-share/doc/hdf5/TechNotes/pipe4.gif
-share/doc/hdf5/TechNotes/pipe5.gif
-share/doc/hdf5/TechNotes/version.gif
-share/doc/hdf5/Tools.html
-share/doc/hdf5/Tutor/Contents.html
-share/doc/hdf5/Tutor/ContentsAdd.html
-share/doc/hdf5/Tutor/ContentsAdv.html
-share/doc/hdf5/Tutor/ContentsFull.html
-share/doc/hdf5/Tutor/ContentsIntro.html
-share/doc/hdf5/Tutor/Copyright.html
-share/doc/hdf5/Tutor/Graphics/AddInfo.gif
-share/doc/hdf5/Tutor/Graphics/AdvTopics.gif
-share/doc/hdf5/Tutor/Graphics/BLANK.gif
-share/doc/hdf5/Tutor/Graphics/ChunkExt.gif
-share/doc/hdf5/Tutor/Graphics/CompDTypes.gif
-share/doc/hdf5/Tutor/Graphics/Copy.gif
-share/doc/hdf5/Tutor/Graphics/CreateAttr.gif
-share/doc/hdf5/Tutor/Graphics/CreateDset1.gif
-share/doc/hdf5/Tutor/Graphics/CreateDset2.gif
-share/doc/hdf5/Tutor/Graphics/CreateFile.gif
-share/doc/hdf5/Tutor/Graphics/CreateGrp1.gif
-share/doc/hdf5/Tutor/Graphics/CreateGrp2.gif
-share/doc/hdf5/Tutor/Graphics/Examples.gif
-share/doc/hdf5/Tutor/Graphics/FileOrg.gif
-share/doc/hdf5/Tutor/Graphics/FullTOC1.gif
-share/doc/hdf5/Tutor/Graphics/FullTOC2.gif
-share/doc/hdf5/Tutor/Graphics/Glossary.gif
-share/doc/hdf5/Tutor/Graphics/H5API.gif
-share/doc/hdf5/Tutor/Graphics/Intro.gif
-share/doc/hdf5/Tutor/Graphics/IntroTopics.gif
-share/doc/hdf5/Tutor/Graphics/Iterate.gif
-share/doc/hdf5/Tutor/Graphics/Makefile.in
-share/doc/hdf5/Tutor/Graphics/MountFile.gif
-share/doc/hdf5/Tutor/Graphics/Quiz.gif
-share/doc/hdf5/Tutor/Graphics/QuizAns.gif
-share/doc/hdf5/Tutor/Graphics/RdWrDataset.gif
-share/doc/hdf5/Tutor/Graphics/RefObject.gif
-share/doc/hdf5/Tutor/Graphics/RefRegion.gif
-share/doc/hdf5/Tutor/Graphics/References.gif
-share/doc/hdf5/Tutor/Graphics/SelectElemCp.gif
-share/doc/hdf5/Tutor/Graphics/SelectHyp.gif
-share/doc/hdf5/Tutor/Graphics/TOC.gif
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-share/doc/hdf5/Tutor/Graphics/TitlePg.gif
-share/doc/hdf5/Tutor/Graphics/Utilities.gif
-share/doc/hdf5/Tutor/answers.html
-share/doc/hdf5/Tutor/api.html
-share/doc/hdf5/Tutor/bighdf2sp.JPG
-share/doc/hdf5/Tutor/compound.html
-share/doc/hdf5/Tutor/crtatt.html
-share/doc/hdf5/Tutor/crtdat.html
-share/doc/hdf5/Tutor/crtfile.html
-share/doc/hdf5/Tutor/crtgrp.html
-share/doc/hdf5/Tutor/crtgrpar.html
-share/doc/hdf5/Tutor/crtgrpd.html
-share/doc/hdf5/Tutor/examples/attrexample.f90
-share/doc/hdf5/Tutor/examples/chunk.f90
-share/doc/hdf5/Tutor/examples/dsetexample.f90
-share/doc/hdf5/Tutor/examples/fileexample.f90
-share/doc/hdf5/Tutor/examples/groupexample.f90
-share/doc/hdf5/Tutor/examples/grpdsetexample.f90
-share/doc/hdf5/Tutor/examples/grpit.f90
-share/doc/hdf5/Tutor/examples/grpsexample.f90
-share/doc/hdf5/Tutor/examples/h5_compound.c
-share/doc/hdf5/Tutor/examples/h5_copy.c
-share/doc/hdf5/Tutor/examples/h5_crtatt.c
-share/doc/hdf5/Tutor/examples/h5_crtdat.c
-share/doc/hdf5/Tutor/examples/h5_crtfile.c
-share/doc/hdf5/Tutor/examples/h5_crtgrp.c
-share/doc/hdf5/Tutor/examples/h5_crtgrpar.c
-share/doc/hdf5/Tutor/examples/h5_crtgrpd.c
-share/doc/hdf5/Tutor/examples/h5_extend.c
-share/doc/hdf5/Tutor/examples/h5_hyperslab.c
-share/doc/hdf5/Tutor/examples/h5_iterate.c
-share/doc/hdf5/Tutor/examples/h5_mount.c
-share/doc/hdf5/Tutor/examples/h5_rdwt.c
-share/doc/hdf5/Tutor/examples/h5_read.c
-share/doc/hdf5/Tutor/examples/h5_ref2objr.c
-share/doc/hdf5/Tutor/examples/h5_ref2objw.c
-share/doc/hdf5/Tutor/examples/h5_ref2regr.c
-share/doc/hdf5/Tutor/examples/h5_ref2regw.c
-share/doc/hdf5/Tutor/examples/h5_reference.c
-share/doc/hdf5/Tutor/examples/hyperslab.f90
-share/doc/hdf5/Tutor/examples/java/Compound.java
-share/doc/hdf5/Tutor/examples/java/Copy.java
-share/doc/hdf5/Tutor/examples/java/CreateAttribute.java
-share/doc/hdf5/Tutor/examples/java/CreateDataset.java
-share/doc/hdf5/Tutor/examples/java/CreateFile.java
-share/doc/hdf5/Tutor/examples/java/CreateFileInput.java
-share/doc/hdf5/Tutor/examples/java/CreateGroup.java
-share/doc/hdf5/Tutor/examples/java/CreateGroupAR.java
-share/doc/hdf5/Tutor/examples/java/CreateGroupDataset.java
-share/doc/hdf5/Tutor/examples/java/DatasetRdWt.java
-share/doc/hdf5/Tutor/examples/java/HyperSlab.java
-share/doc/hdf5/Tutor/examples/java/Makefile
-share/doc/hdf5/Tutor/examples/java/Makefile.in
-share/doc/hdf5/Tutor/examples/java/README
-share/doc/hdf5/Tutor/examples/java/readme.html
-share/doc/hdf5/Tutor/examples/java/runCompound.sh
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-share/doc/hdf5/Tutor/examples/java/runCopy.sh
-share/doc/hdf5/Tutor/examples/java/runCopy.sh.in
-share/doc/hdf5/Tutor/examples/java/runCreateAttribute.sh
-share/doc/hdf5/Tutor/examples/java/runCreateAttribute.sh.in
-share/doc/hdf5/Tutor/examples/java/runCreateDataset.sh
-share/doc/hdf5/Tutor/examples/java/runCreateDataset.sh.in
-share/doc/hdf5/Tutor/examples/java/runCreateFile.sh
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-share/doc/hdf5/Tutor/examples/java/runCreateFileInput.sh
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-share/doc/hdf5/Tutor/examples/java/runCreateGroup.sh
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-share/doc/hdf5/Tutor/examples/java/runCreateGroupAR.sh
-share/doc/hdf5/Tutor/examples/java/runCreateGroupAR.sh.in
-share/doc/hdf5/Tutor/examples/java/runCreateGroupDataset.sh
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-share/doc/hdf5/Tutor/examples/java/runDatasetRdWt.sh
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-share/doc/hdf5/Tutor/examples/java/runHyperSlab.sh
-share/doc/hdf5/Tutor/examples/java/runHyperSlab.sh.in
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-share/doc/hdf5/Tutor/extend.html
-share/doc/hdf5/Tutor/fileorg.html
-share/doc/hdf5/Tutor/glossary.html
-share/doc/hdf5/Tutor/img001.gif
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