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authormarkd <markd>2008-10-14 06:38:21 +0000
committermarkd <markd>2008-10-14 06:38:21 +0000
commit3c73b3c46951fdc84e7989e2d4a2d4a5eb5b3728 (patch)
tree4edd8c06b1378ab069e4cf58521a5d2f8216427e /math/R-lmm
parente30818fd91b92446911dc68d3d72a8e327fb6063 (diff)
downloadpkgsrc-3c73b3c46951fdc84e7989e2d4a2d4a5eb5b3728.tar.gz
Update R-lmm to 0.3.5
Changes unknown
Diffstat (limited to 'math/R-lmm')
-rw-r--r--math/R-lmm/Makefile9
-rw-r--r--math/R-lmm/distinfo9
-rw-r--r--math/R-lmm/patches/patch-aa13
3 files changed, 22 insertions, 9 deletions
diff --git a/math/R-lmm/Makefile b/math/R-lmm/Makefile
index f65584813aa..7e70894a3bc 100644
--- a/math/R-lmm/Makefile
+++ b/math/R-lmm/Makefile
@@ -1,17 +1,16 @@
-# $NetBSD: Makefile,v 1.5 2007/02/22 19:30:04 wiz Exp $
+# $NetBSD: Makefile,v 1.6 2008/10/14 06:38:21 markd Exp $
#
-PKGREVISION= 1
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_R_CRAN:=contrib/}
MAINTAINER= mchittur@cs.nmsu.edu
-HOMEPAGE= ${R_HOMEPAGE_BASE}/lmm.html
+HOMEPAGE= ${R_HOMEPAGE_BASE}/lmm/
COMMENT= Improved procedures for linear mixed models with R
R_PKGNAME= lmm
-R_PKGVER= 0.3-2
-USE_LANGUAGES= c fortran
+R_PKGVER= 0.3-5
+USE_LANGUAGES+= c fortran
.include "../../math/R/Makefile.extension"
.include "../../mk/bsd.pkg.mk"
diff --git a/math/R-lmm/distinfo b/math/R-lmm/distinfo
index 8d3c338eca8..0d058fe8f1b 100644
--- a/math/R-lmm/distinfo
+++ b/math/R-lmm/distinfo
@@ -1,5 +1,6 @@
-$NetBSD: distinfo,v 1.1.1.1 2005/11/04 08:15:42 rillig Exp $
+$NetBSD: distinfo,v 1.2 2008/10/14 06:38:21 markd Exp $
-SHA1 (R/lmm_0.3-2.tar.gz) = a33a23ed1d9ae2a66d66bed0cee40bf3d1956647
-RMD160 (R/lmm_0.3-2.tar.gz) = c22870556376f489211d0c3882542d5a64b8ba70
-Size (R/lmm_0.3-2.tar.gz) = 30977 bytes
+SHA1 (R/lmm_0.3-5.tar.gz) = 47576977719aba4e8c0cf3f9b13db4747cc9a4d9
+RMD160 (R/lmm_0.3-5.tar.gz) = de3d86ae4ba7716bae8c2e56980da23ca9cee1a9
+Size (R/lmm_0.3-5.tar.gz) = 214352 bytes
+SHA1 (patch-aa) = 3aec0141a51f95167d5fb27cabaaea84dfb6be48
diff --git a/math/R-lmm/patches/patch-aa b/math/R-lmm/patches/patch-aa
new file mode 100644
index 00000000000..8d9145ab58c
--- /dev/null
+++ b/math/R-lmm/patches/patch-aa
@@ -0,0 +1,13 @@
+$NetBSD: patch-aa,v 1.1 2008/10/14 06:38:22 markd Exp $
+
+--- src/lmm.f.orig 2008-10-14 19:30:49.000000000 +1300
++++ src/lmm.f
+@@ -549,7 +549,7 @@ C 3 = inadequate information to obta
+ C 4 = value of xi or inv(Ui) became non-pos.def. during iterations
+ C 5 = t(X)%*%W%*%X became non-pos.def. during iterations
+ C 6 = supplied xihat is non-pos.def.
+- integer gmax/50/
++ integer gmax
+ double precision estarhat(0:50)
+ integer ntot,subj(ntot),m,ist(m),ifin(m),occ(ntot),nmax,
+ / pcol,q,zcol(q),iflag,err,msg,iter,p,xcol(p),i,j,