Update R to 2.14.0

changes to many to list - see NEWS file in distribution for details.

7 files changed, 359 insertions, 197 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index c87873eddcb..5eaecceb241 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,13 +1,13 @@
-# $NetBSD: Makefile,v 1.117 2011/11/01 06:02:01 sbd Exp $
+# $NetBSD: Makefile,v 1.118 2011/11/20 04:57:02 markd Exp $
 
-DISTNAME=		R-2.11.1
-PKGREVISION=		4
+DISTNAME=		R-2.14.0
 CATEGORIES=		math
 MASTER_SITES=		${MASTER_SITE_R_CRAN:=base/R-2/}
 
 MAINTAINER=		markd@NetBSD.org
 HOMEPAGE=		http://www.R-project.org/
 COMMENT=		Statistical language for data analysis and graphics
+LICENSE=		gnu-gpl-v2
 
 #needs FPC code not found in older versions of NetBSD
 NOT_FOR_PLATFORM=	NetBSD-1.[0-4]*-alpha NetBSD-1.5-alpha \
@@ -116,7 +116,6 @@ CONFIGURE_ARGS+=	--enable-mbcs=no
 INSTALL_TEMPLATES+=	../../math/R/files/pkg-index.tmpl
 DEINSTALL_TEMPLATES+=	../../math/R/files/pkg-index.tmpl
 PRINT_PLIST_AWK+=	/^lib\/R\/doc\/html\/packages.html$$/ { next; }
-PRINT_PLIST_AWK+=	/^lib\/R\/doc\/html\/search\/index.txt$$/ { next; }
 
 .include "../../mk/pthread.buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/math/R/PLIST b/math/R/PLIST
index dccdae46331..4dad158fcde 100644
--- a/math/R/PLIST
+++ b/math/R/PLIST
@@ -1,8 +1,9 @@
-@comment $NetBSD: PLIST,v 1.11 2010/05/06 07:33:40 adam Exp $
+@comment $NetBSD: PLIST,v 1.12 2011/11/20 04:57:03 markd Exp $
 bin/R
 bin/Rscript
 lib/R/COPYING
 lib/R/NEWS
+lib/R/NEWS.pdf
 lib/R/SVN-REVISION
 lib/R/bin/BATCH
 lib/R/bin/COMPILE
@@ -17,7 +18,6 @@ lib/R/bin/Rdiff
 lib/R/bin/Rprof
 lib/R/bin/Rscript
 lib/R/bin/SHLIB
-lib/R/bin/Sd2Rd
 lib/R/bin/Stangle
 lib/R/bin/Sweave
 lib/R/bin/build
@@ -32,15 +32,15 @@ lib/R/bin/pager
 lib/R/bin/rtags
 lib/R/doc/AUTHORS
 lib/R/doc/COPYING
-lib/R/doc/COPYING.LIB
 lib/R/doc/COPYRIGHTS
 lib/R/doc/CRAN_mirrors.csv
 lib/R/doc/FAQ
 lib/R/doc/KEYWORDS
 lib/R/doc/KEYWORDS.db
-lib/R/doc/NEWS
+lib/R/doc/NEWS.rds
 lib/R/doc/RESOURCES
 lib/R/doc/THANKS
+lib/R/doc/html/NEWS.html
 lib/R/doc/html/R.css
 lib/R/doc/html/Search.html
 lib/R/doc/html/SearchOn.html
@@ -54,13 +54,6 @@ lib/R/doc/html/packages-head-utf8.html
 lib/R/doc/html/resources.html
 lib/R/doc/html/right.jpg
 lib/R/doc/html/up.jpg
-lib/R/doc/manual/R-FAQ.html
-lib/R/doc/manual/R-admin.html
-lib/R/doc/manual/R-data.html
-lib/R/doc/manual/R-exts.html
-lib/R/doc/manual/R-intro.html
-lib/R/doc/manual/R-ints.html
-lib/R/doc/manual/R-lang.html
 lib/R/etc/Makeconf
 lib/R/etc/Renviron
 lib/R/etc/ldpaths
@@ -79,6 +72,7 @@ lib/R/include/R_ext/GraphicsDevice.h
 lib/R/include/R_ext/GraphicsEngine.h
 lib/R/include/R_ext/Lapack.h
 lib/R/include/R_ext/Linpack.h
+lib/R/include/R_ext/MathThreads.h
 lib/R/include/R_ext/Memory.h
 lib/R/include/R_ext/Parse.h
 lib/R/include/R_ext/Print.h
@@ -126,6 +120,7 @@ lib/R/library/KernSmooth/help/KernSmooth.rdx
 lib/R/library/KernSmooth/help/aliases.rds
 lib/R/library/KernSmooth/help/paths.rds
 lib/R/library/KernSmooth/html/00Index.html
+lib/R/library/KernSmooth/html/R.css
 lib/R/library/KernSmooth/libs/KernSmooth.so
 lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo
 lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo
@@ -153,6 +148,7 @@ lib/R/library/MASS/help/MASS.rdx
 lib/R/library/MASS/help/aliases.rds
 lib/R/library/MASS/help/paths.rds
 lib/R/library/MASS/html/00Index.html
+lib/R/library/MASS/html/R.css
 lib/R/library/MASS/libs/MASS.so
 lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo
 lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo
@@ -235,6 +231,7 @@ lib/R/library/Matrix/help/Matrix.rdx
 lib/R/library/Matrix/help/aliases.rds
 lib/R/library/Matrix/help/paths.rds
 lib/R/library/Matrix/html/00Index.html
+lib/R/library/Matrix/html/R.css
 lib/R/library/Matrix/include/Matrix.h
 lib/R/library/Matrix/include/Matrix_stubs.c
 lib/R/library/Matrix/include/cholmod.h
@@ -243,8 +240,9 @@ lib/R/library/Matrix/po/de/LC_MESSAGES/Matrix.mo
 lib/R/library/Matrix/po/de/LC_MESSAGES/R-Matrix.mo
 lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo
 lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo
+lib/R/library/Matrix/test-tools-1.R
+lib/R/library/Matrix/test-tools-Matrix.R
 lib/R/library/Matrix/test-tools.R
-lib/R/library/R.css
 lib/R/library/base/CITATION
 lib/R/library/base/DESCRIPTION
 lib/R/library/base/INDEX
@@ -257,6 +255,7 @@ lib/R/library/base/R/Rprofile
 lib/R/library/base/R/base
 lib/R/library/base/R/base.rdb
 lib/R/library/base/R/base.rdx
+lib/R/library/base/demo/error.catching.R
 lib/R/library/base/demo/is.things.R
 lib/R/library/base/demo/recursion.R
 lib/R/library/base/demo/scoping.R
@@ -266,6 +265,7 @@ lib/R/library/base/help/base.rdb
 lib/R/library/base/help/base.rdx
 lib/R/library/base/help/paths.rds
 lib/R/library/base/html/00Index.html
+lib/R/library/base/html/R.css
 lib/R/library/base/po/de/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/en@quot/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/fr/LC_MESSAGES/R-base.mo
@@ -274,6 +274,7 @@ lib/R/library/base/po/ja/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/ko/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/pt_BR/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/ru/LC_MESSAGES/R-base.mo
+lib/R/library/base/po/tr/LC_MESSAGES/R-base.mo
 lib/R/library/base/po/zh_CN/LC_MESSAGES/R-base.mo
 lib/R/library/boot/CITATION
 lib/R/library/boot/DESCRIPTION
@@ -297,6 +298,7 @@ lib/R/library/boot/help/boot.rdb
 lib/R/library/boot/help/boot.rdx
 lib/R/library/boot/help/paths.rds
 lib/R/library/boot/html/00Index.html
+lib/R/library/boot/html/R.css
 lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo
 lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo
 lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
@@ -321,6 +323,7 @@ lib/R/library/class/help/class.rdb
 lib/R/library/class/help/class.rdx
 lib/R/library/class/help/paths.rds
 lib/R/library/class/html/00Index.html
+lib/R/library/class/html/R.css
 lib/R/library/class/libs/class.so
 lib/R/library/class/po/de/LC_MESSAGES/R-class.mo
 lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo
@@ -347,7 +350,10 @@ lib/R/library/cluster/help/cluster.rdb
 lib/R/library/cluster/help/cluster.rdx
 lib/R/library/cluster/help/paths.rds
 lib/R/library/cluster/html/00Index.html
+lib/R/library/cluster/html/R.css
 lib/R/library/cluster/libs/cluster.so
+lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo
+lib/R/library/cluster/po/en@quot/LC_MESSAGES/R-cluster.mo
 lib/R/library/codetools/DESCRIPTION
 lib/R/library/codetools/INDEX
 lib/R/library/codetools/Meta/Rd.rds
@@ -365,14 +371,40 @@ lib/R/library/codetools/help/codetools.rdb
 lib/R/library/codetools/help/codetools.rdx
 lib/R/library/codetools/help/paths.rds
 lib/R/library/codetools/html/00Index.html
+lib/R/library/codetools/html/R.css
+lib/R/library/compiler/DESCRIPTION
+lib/R/library/compiler/INDEX
+lib/R/library/compiler/Meta/Rd.rds
+lib/R/library/compiler/Meta/hsearch.rds
+lib/R/library/compiler/Meta/links.rds
+lib/R/library/compiler/Meta/nsInfo.rds
+lib/R/library/compiler/Meta/package.rds
+lib/R/library/compiler/NAMESPACE
+lib/R/library/compiler/R/compiler
+lib/R/library/compiler/R/compiler.rdb
+lib/R/library/compiler/R/compiler.rdx
+lib/R/library/compiler/help/AnIndex
+lib/R/library/compiler/help/aliases.rds
+lib/R/library/compiler/help/compiler.rdb
+lib/R/library/compiler/help/compiler.rdx
+lib/R/library/compiler/help/paths.rds
+lib/R/library/compiler/html/00Index.html
+lib/R/library/compiler/html/R.css
+lib/R/library/compiler/po/de/LC_MESSAGES/R-compiler.mo
+lib/R/library/compiler/po/en@quot/LC_MESSAGES/R-compiler.mo
+lib/R/library/compiler/po/fr/LC_MESSAGES/R-compiler.mo
+lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
+lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
+lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
 lib/R/library/datasets/DESCRIPTION
 lib/R/library/datasets/INDEX
 lib/R/library/datasets/Meta/Rd.rds
 lib/R/library/datasets/Meta/data.rds
 lib/R/library/datasets/Meta/hsearch.rds
 lib/R/library/datasets/Meta/links.rds
+lib/R/library/datasets/Meta/nsInfo.rds
 lib/R/library/datasets/Meta/package.rds
-lib/R/library/datasets/R/datasets
+lib/R/library/datasets/NAMESPACE
 lib/R/library/datasets/data/Rdata.rdb
 lib/R/library/datasets/data/Rdata.rds
 lib/R/library/datasets/data/Rdata.rdx
@@ -383,7 +415,7 @@ lib/R/library/datasets/help/datasets.rdb
 lib/R/library/datasets/help/datasets.rdx
 lib/R/library/datasets/help/paths.rds
 lib/R/library/datasets/html/00Index.html
-lib/R/library/foreign/COPYING
+lib/R/library/datasets/html/R.css
 lib/R/library/foreign/DESCRIPTION
 lib/R/library/foreign/INDEX
 lib/R/library/foreign/LICENCE
@@ -405,6 +437,7 @@ lib/R/library/foreign/help/foreign.rdb
 lib/R/library/foreign/help/foreign.rdx
 lib/R/library/foreign/help/paths.rds
 lib/R/library/foreign/html/00Index.html
+lib/R/library/foreign/html/R.css
 lib/R/library/foreign/libs/foreign.so
 lib/R/library/foreign/po/de/LC_MESSAGES/R-foreign.mo
 lib/R/library/foreign/po/de/LC_MESSAGES/foreign.mo
@@ -423,95 +456,95 @@ lib/R/library/grDevices/NAMESPACE
 lib/R/library/grDevices/R/grDevices
 lib/R/library/grDevices/R/grDevices.rdb
 lib/R/library/grDevices/R/grDevices.rdx
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-lib/R/library/grDevices/afm/CM_boldx_italic_10.afm
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-lib/R/library/grDevices/afm/CM_regular_10.afm
-lib/R/library/grDevices/afm/CM_symbol_10.afm
-lib/R/library/grDevices/afm/Courier-Bold.afm
-lib/R/library/grDevices/afm/Courier-BoldOblique.afm
-lib/R/library/grDevices/afm/Courier-Oblique.afm
-lib/R/library/grDevices/afm/Courier.afm
-lib/R/library/grDevices/afm/Helvetica-Bold.afm
-lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm
-lib/R/library/grDevices/afm/Helvetica-Oblique.afm
-lib/R/library/grDevices/afm/Helvetica.afm
+lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
+lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
+lib/R/library/grDevices/afm/CM_italic_10.afm.gz
+lib/R/library/grDevices/afm/CM_regular_10.afm.gz
+lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
+lib/R/library/grDevices/afm/Courier-Bold.afm.gz
+lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz
+lib/R/library/grDevices/afm/Courier-Oblique.afm.gz
+lib/R/library/grDevices/afm/Courier.afm.gz
+lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
+lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz
+lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
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 lib/R/library/utils/help/aliases.rds
 lib/R/library/utils/help/paths.rds
 lib/R/library/utils/help/utils.rdb
 lib/R/library/utils/help/utils.rdx
 lib/R/library/utils/html/00Index.html
+lib/R/library/utils/html/R.css
 lib/R/library/utils/iconvlist
 lib/R/library/utils/misc/exDIF.csv
 lib/R/library/utils/misc/exDIF.dif
@@ -1155,21 +1248,22 @@ lib/R/library/utils/po/en@quot/LC_MESSAGES/R-utils.mo
 lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo
 lib/R/library/utils/po/ja/LC_MESSAGES/R-utils.mo
 lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
+lib/R/library/utils/po/pt_BR/LC_MESSAGES/R-utils.mo
 lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
+lib/R/library/utils/po/tr/LC_MESSAGES/R-utils.mo
 lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
 lib/R/modules/R_X11.so
 lib/R/modules/internet.so
 lib/R/modules/lapack.so
 lib/R/modules/vfonts.so
 lib/R/share/R/REMOVE.R
-lib/R/share/R/Rdiff.R
 lib/R/share/R/examples-footer.R
 lib/R/share/R/examples-header.R
 lib/R/share/R/nspackloader.R
-lib/R/share/R/packloader.R
 lib/R/share/R/tests-startup.R
 lib/R/share/encodings/Adobe-glyphlist
 lib/R/share/encodings/character-sets
+lib/R/share/java/README
 lib/R/share/java/getsp.class
 lib/R/share/licenses/AGPL-3
 lib/R/share/licenses/Artistic-1.0
@@ -1192,29 +1286,31 @@ lib/R/share/locale/ko/LC_MESSAGES/R.mo
 lib/R/share/locale/nn/LC_MESSAGES/R.mo
 lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo
 lib/R/share/locale/ru/LC_MESSAGES/R.mo
+lib/R/share/locale/tr/LC_MESSAGES/R.mo
 lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo
 lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo
 lib/R/share/make/basepkg.mk
 lib/R/share/make/check.mk
 lib/R/share/make/clean.mk
 lib/R/share/make/config.mk
+lib/R/share/make/lazycomp.mk
 lib/R/share/make/shlib.mk
 lib/R/share/make/vars.mk
 lib/R/share/make/winshlib.mk
-lib/R/share/perl/File/Copy/Recursive.pm
-lib/R/share/perl/R/Dcf.pm
-lib/R/share/perl/R/Logfile.pm
-lib/R/share/perl/R/Utils.pm
-lib/R/share/perl/R/Vars.pm
 lib/R/share/sh/echo.sh
-lib/R/share/texmf/Rd.sty
-lib/R/share/texmf/Sweave.sty
-lib/R/share/texmf/omsaer.fd
-lib/R/share/texmf/omsaett.fd
-lib/R/share/texmf/omscmtt.fd
-lib/R/share/texmf/ts1aer.fd
-lib/R/share/texmf/ts1aett.fd
-lib/R/share/texmf/upquote.sty
+lib/R/share/texmf/bibtex/bib/RJournal.bib
+lib/R/share/texmf/bibtex/bib/Rnews.bib
+lib/R/share/texmf/bibtex/bst/jss.bst
+lib/R/share/texmf/tex/latex/Rd.sty
+lib/R/share/texmf/tex/latex/Sweave.sty
+lib/R/share/texmf/tex/latex/jss.cls
+lib/R/share/texmf/tex/latex/omsaer.fd
+lib/R/share/texmf/tex/latex/omsaett.fd
+lib/R/share/texmf/tex/latex/omscmtt.fd
+lib/R/share/texmf/tex/latex/ts1aer.fd
+lib/R/share/texmf/tex/latex/ts1aett.fd
+lib/R/share/texmf/tex/latex/upquote.sty
 lib/pkgconfig/libR.pc
 man/man1/R.1
 man/man1/Rscript.1
+@pkgdir lib/R/doc/manual
diff --git a/math/R/distinfo b/math/R/distinfo
index 36ab5a66cb8..6ccfb1e644e 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.44 2010/07/03 07:25:57 adam Exp $
+$NetBSD: distinfo,v 1.45 2011/11/20 04:57:03 markd Exp $
 
-SHA1 (R-2.11.1.tar.gz) = 0b36780627f3cc5cea3f41e0b717ed7ee92ba086
-RMD160 (R-2.11.1.tar.gz) = a5223a3f784ad0f808d893d82a4e0a130c9a9b3a
-Size (R-2.11.1.tar.gz) = 19729300 bytes
-SHA1 (patch-ab) = 629c8d5f9d2278c97f48fb55c0e5172a0aea58b2
-SHA1 (patch-ac) = 53b4e331d8887a469e74662c1a19ad5571ed72d6
+SHA1 (R-2.14.0.tar.gz) = 0f46bf75a7c150350b1142c29a98e7994d2b4bef
+RMD160 (R-2.14.0.tar.gz) = f2f2805c8660d58050be1d11abf376843dbb40ea
+Size (R-2.14.0.tar.gz) = 22675106 bytes
+SHA1 (patch-ac) = ea885d8391ec06a7cc7fcbbadce134c794b7a47c
 SHA1 (patch-ad) = 43ae23bd0815986c3bac661bd3354cd96b3e54e4
+SHA1 (patch-src_main_format.c) = 79bd8eb005412359b07b6e1195c1f9d1f00ac008
diff --git a/math/R/files/pkg-index.tmpl b/math/R/files/pkg-index.tmpl
index 28a834ee430..494ee888824 100644
--- a/math/R/files/pkg-index.tmpl
+++ b/math/R/files/pkg-index.tmpl
@@ -1,4 +1,4 @@
-# $NetBSD: pkg-index.tmpl,v 1.2 2008/03/07 16:11:39 jlam Exp $
+# $NetBSD: pkg-index.tmpl,v 1.3 2011/11/20 04:57:03 markd Exp $
 #
 # Rebuild R package indices upon installation or deinstallation of an
 # R extension.
@@ -9,8 +9,6 @@ rebuild_R_pkg_indices()
 	${ECHO} "${PKGNAME}: rebuilding R package indices and help files"
 	R CMD ${PERL5} ${PKG_PREFIX}/lib/R/share/perl/build-help.pl \
 		--htmllists 2>/dev/null
-	${CAT} ${PKG_PREFIX}/lib/R/library/*/CONTENTS \
-		> ${PKG_PREFIX}/lib/R/doc/html/search/index.txt 2>/dev/null
 }
 
 case ${STAGE} in
@@ -20,7 +18,6 @@ POST-INSTALL)
 DEINSTALL)
 	if [ "${PKGBASE}" = "R" ] ; then
 		${RM} -f ${PKG_PREFIX}/lib/R/doc/html/packages.html
-		${RM} -f ${PKG_PREFIX}/lib/R/doc/html/search/index.txt
 	fi
 	;;
 POST-DEINSTALL)
diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab
deleted file mode 100644
index a83a065ee02..00000000000
--- a/math/R/patches/patch-ab
+++ /dev/null
@@ -1,13 +0,0 @@
-$NetBSD: patch-ab,v 1.20 2010/05/06 07:33:41 adam Exp $
-
---- src/include/Defn.h.orig	2010-03-25 08:31:54.000000000 +0000
-+++ src/include/Defn.h
-@@ -1243,7 +1243,7 @@ extern char *locale2charset(const char *
- # ifdef HAVE_ALLOCA_H
- #  include <alloca.h>
- # endif
--# if !HAVE_DECL_ALLOCA  && !defined(__FreeBSD__)
-+# if !HAVE_DECL_ALLOCA  && !defined(__FreeBSD__) && !defined(__DragonFly__)
- extern char *alloca(size_t);
- # endif
- #endif
diff --git a/math/R/patches/patch-ac b/math/R/patches/patch-ac
index d8d71dacdba..4b4ef24519b 100644
--- a/math/R/patches/patch-ac
+++ b/math/R/patches/patch-ac
@@ -1,8 +1,8 @@
-$NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
+$NetBSD: patch-ac,v 1.26 2011/11/20 04:57:03 markd Exp $
 
---- configure.orig	2010-03-31 22:10:52.000000000 +0000
+--- configure.orig	2011-10-23 22:05:54.000000000 +0000
 +++ configure
-@@ -3755,7 +3755,7 @@ fi
+@@ -3867,7 +3867,7 @@ fi
  
  
  if test "${want_R_shlib}" = yes; then
@@ -11,7 +11,19 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
  else
    LIBR=
  fi
-@@ -23591,6 +23591,7 @@ cat > conftest.c <<EOF
+@@ -22728,6 +22728,11 @@ fi
+ 	  done
+ 	  ;;
+ 	-[lLR]*)
++	    case $ac_arg in
++	    -R*)
++		ac_arg="${wl}$ac_arg"
++		;;
++	    esac
+ 	    ac_exists=false
+   for ac_i in $ac_cv_f77_libs; do
+     if test x"$ac_arg" = x"$ac_i"; then
+@@ -23613,6 +23618,7 @@ cat > conftest.c <<EOF
  #else
  # define F77_SYMBOL(x)   x
  #endif
@@ -19,7 +31,7 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
  int main () {
    exit(0);
  }
-@@ -23667,6 +23668,9 @@ cat > conftest.c <<EOF
+@@ -23689,6 +23695,9 @@ cat > conftest.c <<EOF
  
  extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y);
  
@@ -29,7 +41,7 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
  int main () {
    int a[3] = {17, 237, 2000000000}, b[2], res = 0;
    double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3];
-@@ -23762,6 +23766,9 @@ typedef struct {
+@@ -23784,6 +23793,9 @@ typedef struct {
  
  extern void F77_SYMBOL(cftest)(Rcomplex *x);
  
@@ -39,16 +51,16 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
  int main () {
      Rcomplex z[3];
  
-@@ -25918,7 +25925,7 @@ $as_echo "$as_me: WARNING: Use of flat n
+@@ -25970,7 +25982,7 @@ $as_echo "$as_me: WARNING: Use of flat n
        SHLIB_LIBADD="-lcc_dynamic"
      fi
      ;;
 -  freebsd*)
 +  freebsd* | dragonfly*)
-     ## Only sure for FreeBSD 3 and above.
      main_ldflags="-export-dynamic"
      shlib_ldflags="-shared"
-@@ -26007,6 +26014,12 @@ $as_echo "$as_me: WARNING: Use of flat n
+     ;;
+@@ -26058,6 +26070,12 @@ $as_echo "$as_me: WARNING: Use of flat n
      fcpicflags=
      ;;
    netbsd*)
@@ -61,7 +73,7 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
      if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then
        main_ldflags="-export-dynamic"
        shlib_ldflags="-shared"
-@@ -26104,7 +26117,7 @@ fi
+@@ -26156,7 +26174,7 @@ fi
  : ${FPICFLAGS="${fpicflags}"}
  if test -z "${FPICFLAGS}"; then
    case "${host_os}" in
@@ -70,7 +82,7 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
        ;;
      *)
        { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: I could not determine FPICFLAGS." >&5
-@@ -29156,6 +29169,15 @@ cat > conftest.c <<EOF
+@@ -29275,6 +29293,15 @@ cat > conftest.c <<EOF
  #endif
  extern void F77_SYMBOL(test1)(int *iflag);
  
@@ -86,7 +98,7 @@ $NetBSD: patch-ac,v 1.25 2010/05/06 07:33:41 adam Exp $
  int main () {
    int iflag;
    F77_SYMBOL(test1)(&iflag);
-@@ -29223,6 +29245,14 @@ else
+@@ -29342,6 +29369,14 @@ else
  #else
  # define F77_SYMBOL(x)   x
  #endif
diff --git a/math/R/patches/patch-src_main_format.c b/math/R/patches/patch-src_main_format.c
new file mode 100644
index 00000000000..a369cbc6794
--- /dev/null
+++ b/math/R/patches/patch-src_main_format.c
@@ -0,0 +1,71 @@
+$NetBSD: patch-src_main_format.c,v 1.1 2011/11/20 04:57:03 markd Exp $
+
+NetBSD does not have rintl() or floorl() so use the OpenBSD implementation
+of rintl() in that case.
+
+--- src/main/format.c.orig	2011-10-02 22:02:34.000000000 +0000
++++ src/main/format.c
+@@ -130,6 +130,7 @@ void formatInteger(int *x, int n, int *f
+ # define R_nearbyintl rintl
+ # else
+ # define R_nearbyintl private_nearbyintl
++# ifndef __NetBSD__
+ long double private_nearbyintl(long double x)
+ {
+     long double x1;
+@@ -142,6 +143,55 @@ long double private_nearbyintl(long doub
+         if (x/2.0 == floorl(x/2.0)) return(x); else return(x1);
+     }
+ }
++# else
++#include <machine/ieee.h>
++
++#if LDBL_MAX_EXP != 0x4000
++/* We also require the usual bias, min exp and expsign packing. */
++#error "Unsupported long double format"
++#endif
++
++#define BIAS    (LDBL_MAX_EXP - 1)
++
++static const float
++shift[2] = {
++#if LDBL_MANT_DIG == 64
++        0x1.0p63, -0x1.0p63
++#elif LDBL_MANT_DIG == 113
++        0x1.0p112, -0x1.0p112
++#else
++#error "Unsupported long double format"
++#endif
++};
++static const float zero[2] = { 0.0, -0.0 };
++
++long double private_nearbyintl(long double x)
++{
++        union {
++                long double e;
++                struct ieee_ext bits;
++        } u;
++        uint32_t expsign;
++        int ex, sign;
++        u.e = x;
++        expsign = (u.bits.ext_sign << 15) | u.bits.ext_exp;
++        ex = expsign & 0x7fff;
++
++        if (ex >= BIAS + LDBL_MANT_DIG - 1) {
++                if (ex == BIAS + LDBL_MAX_EXP)
++                        return (x + x); /* Inf, NaN, or unsupported format */
++                return (x);             /* finite and already an integer */
++        }
++        sign = expsign >> 15;
++        x += shift[sign];
++        x -= shift[sign];
++
++        if (ex < BIAS && x == 0.0L)
++                return (zero[sign]);
++
++        return (x);
++}
++# endif
+ # endif
+ # else /* no long double */
+ # ifdef HAVE_NEARBYINT