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authormarkd <markd@pkgsrc.org>2007-11-03 20:14:39 +0000
committermarkd <markd@pkgsrc.org>2007-11-03 20:14:39 +0000
commit89144712b9557c9d33f04f163b7d9d85d9713bf9 (patch)
treebd493cfd2ea4eb422d5fbb083b52f4530015757c /math/R
parentc35e026080b57cc10af613247dc09441ef85598c (diff)
downloadpkgsrc-89144712b9557c9d33f04f163b7d9d85d9713bf9.tar.gz
Update R to version 2.6.0
Many new features, changes and bug fixes. See lib/R/doc/NEWS for details.
Diffstat (limited to 'math/R')
-rw-r--r--math/R/Makefile6
-rw-r--r--math/R/PLIST343
-rw-r--r--math/R/distinfo12
-rw-r--r--math/R/patches/patch-aa14
-rw-r--r--math/R/patches/patch-ac238
5 files changed, 431 insertions, 182 deletions
diff --git a/math/R/Makefile b/math/R/Makefile
index c97c7d8569a..f3a06eda218 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.92 2007/09/08 13:44:48 rillig Exp $
+# $NetBSD: Makefile,v 1.93 2007/11/03 20:14:39 markd Exp $
-DISTNAME= R-2.4.1
-PKGREVISION= 3
+DISTNAME= R-2.6.0
CATEGORIES= math
MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-2/}
@@ -18,6 +17,7 @@ PKG_INSTALLATION_TYPES= overwrite pkgviews
TEST_TARGET= check
USE_TOOLS+= gmake gzip:run makeinfo perl:run sed unzip:run xmkmf
USE_GNU_READLINE= yes # uses callback interface
+USE_GNU_ICONV= yes # latin1 support, iconvlist
USE_LANGUAGES= c fortran
USE_LIBTOOL= yes
TEXINFO_REQD= 4.7
diff --git a/math/R/PLIST b/math/R/PLIST
index 625165eaa80..901ddf7533d 100644
--- a/math/R/PLIST
+++ b/math/R/PLIST
@@ -1,5 +1,6 @@
-@comment $NetBSD: PLIST,v 1.4 2007/03/20 11:00:58 markd Exp $
+@comment $NetBSD: PLIST,v 1.5 2007/11/03 20:14:39 markd Exp $
bin/R
+bin/Rscript
lib/R/COPYING
lib/R/NEWS
lib/R/SVN-REVISION
@@ -15,6 +16,7 @@ lib/R/bin/Rd2txt
lib/R/bin/Rdconv
lib/R/bin/Rdiff
lib/R/bin/Rprof
+lib/R/bin/Rscript
lib/R/bin/SHLIB
lib/R/bin/Sd2Rd
lib/R/bin/Stangle
@@ -28,7 +30,6 @@ lib/R/bin/javareconf
lib/R/bin/libtool
lib/R/bin/mkinstalldirs
lib/R/bin/pager
-lib/R/bin/texi2dvi
lib/R/doc/AUTHORS
lib/R/doc/COPYING
lib/R/doc/COPYING.LIB
@@ -103,6 +104,8 @@ lib/R/include/R_ext/Utils.h
lib/R/include/R_ext/eventloop.h
lib/R/include/R_ext/libextern.h
lib/R/include/R_ext/rlocale.h
+lib/R/include/R_ext/stats_package.h
+lib/R/include/R_ext/stats_stubs.h
lib/R/include/Rconfig.h
lib/R/include/Rdefines.h
lib/R/include/Rdevices.h
@@ -118,6 +121,7 @@ lib/R/lib/libRlapack.so
lib/R/library/KernSmooth/CONTENTS
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
+lib/R/library/KernSmooth/LICENCE
lib/R/library/KernSmooth/Meta/Rd.rds
lib/R/library/KernSmooth/Meta/hsearch.rds
lib/R/library/KernSmooth/Meta/nsInfo.rds
@@ -759,6 +763,7 @@ lib/R/library/base/R-ex/Control.R
lib/R/library/base/R-ex/Cstack_info.R
lib/R/library/base/R-ex/DateTimeClasses.R
lib/R/library/base/R-ex/Dates.R
+lib/R/library/base/R-ex/Encoding.R
lib/R/library/base/R-ex/Extract.R
lib/R/library/base/R-ex/Extract.data.frame.R
lib/R/library/base/R-ex/Extract.factor.R
@@ -770,6 +775,7 @@ lib/R/library/base/R-ex/Math.R
lib/R/library/base/R-ex/Memory.R
lib/R/library/base/R-ex/NA.R
lib/R/library/base/R-ex/NULL.R
+lib/R/library/base/R-ex/NumericConstants.R
lib/R/library/base/R-ex/Ops.Date.R
lib/R/library/base/R-ex/Paren.R
lib/R/library/base/R-ex/Platform.R
@@ -780,9 +786,15 @@ lib/R/library/base/R-ex/Recall.R
lib/R/library/base/R-ex/Round.R
lib/R/library/base/R-ex/Special.R
lib/R/library/base/R-ex/Startup.R
+lib/R/library/base/R-ex/Sys.getenv.R
+lib/R/library/base/R-ex/Sys.getpid.R
+lib/R/library/base/R-ex/Sys.glob.R
lib/R/library/base/R-ex/Sys.info.R
+lib/R/library/base/R-ex/Sys.localeconv.R
+lib/R/library/base/R-ex/Sys.setenv.R
lib/R/library/base/R-ex/Sys.sleep.R
lib/R/library/base/R-ex/Sys.time.R
+lib/R/library/base/R-ex/Sys.which.R
lib/R/library/base/R-ex/Version.R
lib/R/library/base/R-ex/abbreviate.R
lib/R/library/base/R-ex/agrep.R
@@ -811,6 +823,7 @@ lib/R/library/base/R-ex/bquote.R
lib/R/library/base/R-ex/by.R
lib/R/library/base/R-ex/c.R
lib/R/library/base/R-ex/call.R
+lib/R/library/base/R-ex/callCC.R
lib/R/library/base/R-ex/capabilities.R
lib/R/library/base/R-ex/cat.R
lib/R/library/base/R-ex/cbind.R
@@ -831,7 +844,6 @@ lib/R/library/base/R-ex/conditions.R
lib/R/library/base/R-ex/conflicts.R
lib/R/library/base/R-ex/connections.R
lib/R/library/base/R-ex/converters.R
-lib/R/library/base/R-ex/count.fields.R
lib/R/library/base/R-ex/crossprod.R
lib/R/library/base/R-ex/cumsum.R
lib/R/library/base/R-ex/cut.POSIXt.R
@@ -880,6 +892,7 @@ lib/R/library/base/R-ex/format.pval.R
lib/R/library/base/R-ex/formatDL.R
lib/R/library/base/R-ex/formatc.R
lib/R/library/base/R-ex/function.R
+lib/R/library/base/R-ex/funprog.R
lib/R/library/base/R-ex/gc.R
lib/R/library/base/R-ex/gc.time.R
lib/R/library/base/R-ex/get.R
@@ -887,8 +900,6 @@ lib/R/library/base/R-ex/getCallingDLL.R
lib/R/library/base/R-ex/getDLLRegisteredRoutines.R
lib/R/library/base/R-ex/getLoadedDLLs.R
lib/R/library/base/R-ex/getNativeSymbolInfo.R
-lib/R/library/base/R-ex/getenv.R
-lib/R/library/base/R-ex/getpid.R
lib/R/library/base/R-ex/gettext.R
lib/R/library/base/R-ex/getwd.R
lib/R/library/base/R-ex/gl.R
@@ -923,7 +934,6 @@ lib/R/library/base/R-ex/library.dynam.R
lib/R/library/base/R-ex/list.R
lib/R/library/base/R-ex/list.files.R
lib/R/library/base/R-ex/load.R
-lib/R/library/base/R-ex/localeconv.R
lib/R/library/base/R-ex/locales.R
lib/R/library/base/R-ex/lower.tri.R
lib/R/library/base/R-ex/ls.R
@@ -958,12 +968,12 @@ lib/R/library/base/R-ex/ns-alt.R
lib/R/library/base/R-ex/ns-dblcolon.R
lib/R/library/base/R-ex/ns-topenv.R
lib/R/library/base/R-ex/numeric.R
+lib/R/library/base/R-ex/numeric_version.R
lib/R/library/base/R-ex/octmode.R
lib/R/library/base/R-ex/on.exit.R
lib/R/library/base/R-ex/options.R
lib/R/library/base/R-ex/order.R
lib/R/library/base/R-ex/outer.R
-lib/R/library/base/R-ex/package_version.R
lib/R/library/base/R-ex/parse.R
lib/R/library/base/R-ex/paste.R
lib/R/library/base/R-ex/path.expand.R
@@ -978,7 +988,6 @@ lib/R/library/base/R-ex/proc.time.R
lib/R/library/base/R-ex/prod.R
lib/R/library/base/R-ex/prop.table.R
lib/R/library/base/R-ex/pushBack.R
-lib/R/library/base/R-ex/putenv.R
lib/R/library/base/R-ex/qr.R
lib/R/library/base/R-ex/qraux.R
lib/R/library/base/R-ex/quit.R
@@ -1022,7 +1031,7 @@ lib/R/library/base/R-ex/sort.R
lib/R/library/base/R-ex/source.R
lib/R/library/base/R-ex/split.R
lib/R/library/base/R-ex/sprintf.R
-lib/R/library/base/R-ex/stack.R
+lib/R/library/base/R-ex/srcfile.R
lib/R/library/base/R-ex/stop.R
lib/R/library/base/R-ex/stopifnot.R
lib/R/library/base/R-ex/strptime.R
@@ -1038,6 +1047,7 @@ lib/R/library/base/R-ex/svd.R
lib/R/library/base/R-ex/sweep.R
lib/R/library/base/R-ex/switch.R
lib/R/library/base/R-ex/sys.parent.R
+lib/R/library/base/R-ex/sys.source.R
lib/R/library/base/R-ex/system.R
lib/R/library/base/R-ex/system.file.R
lib/R/library/base/R-ex/system.time.R
@@ -1053,6 +1063,7 @@ lib/R/library/base/R-ex/textconnections.R
lib/R/library/base/R-ex/toString.R
lib/R/library/base/R-ex/trace.R
lib/R/library/base/R-ex/traceback.R
+lib/R/library/base/R-ex/tracemem.R
lib/R/library/base/R-ex/transform.R
lib/R/library/base/R-ex/try.R
lib/R/library/base/R-ex/typeof.R
@@ -1068,7 +1079,6 @@ lib/R/library/base/R-ex/which.R
lib/R/library/base/R-ex/which.min.R
lib/R/library/base/R-ex/with.R
lib/R/library/base/R-ex/write.R
-lib/R/library/base/R-ex/write.table.R
lib/R/library/base/R-ex/zMachine.R
lib/R/library/base/R-ex/zScript.R
lib/R/library/base/R-ex/zpackages.R
@@ -1092,6 +1102,7 @@ lib/R/library/base/help/DateTimeClasses
lib/R/library/base/help/Dates
lib/R/library/base/help/Defunct
lib/R/library/base/help/Deprecated
+lib/R/library/base/help/Encoding
lib/R/library/base/help/Extract
lib/R/library/base/help/Extract.data.frame
lib/R/library/base/help/Extract.factor
@@ -1117,15 +1128,22 @@ lib/R/library/base/help/Random
lib/R/library/base/help/Random-user
lib/R/library/base/help/RdUtils
lib/R/library/base/help/Recall
+lib/R/library/base/help/Reserved
lib/R/library/base/help/Rhome
lib/R/library/base/help/Round
lib/R/library/base/help/Signals
lib/R/library/base/help/Special
lib/R/library/base/help/Startup
lib/R/library/base/help/Syntax
+lib/R/library/base/help/Sys.getenv
+lib/R/library/base/help/Sys.getpid
+lib/R/library/base/help/Sys.glob
lib/R/library/base/help/Sys.info
+lib/R/library/base/help/Sys.localeconv
+lib/R/library/base/help/Sys.setenv
lib/R/library/base/help/Sys.sleep
lib/R/library/base/help/Sys.time
+lib/R/library/base/help/Sys.which
lib/R/library/base/help/Trig
lib/R/library/base/help/UseMethod
lib/R/library/base/help/Version
@@ -1164,6 +1182,7 @@ lib/R/library/base/help/builtins
lib/R/library/base/help/by
lib/R/library/base/help/c
lib/R/library/base/help/call
+lib/R/library/base/help/callCC
lib/R/library/base/help/capabilities
lib/R/library/base/help/cat
lib/R/library/base/help/cbind
@@ -1186,7 +1205,6 @@ lib/R/library/base/help/connections
lib/R/library/base/help/contributors
lib/R/library/base/help/converters
lib/R/library/base/help/copyright
-lib/R/library/base/help/count.fields
lib/R/library/base/help/crossprod
lib/R/library/base/help/cumsum
lib/R/library/base/help/cut
@@ -1241,6 +1259,7 @@ lib/R/library/base/help/format.pval
lib/R/library/base/help/formatDL
lib/R/library/base/help/formatc
lib/R/library/base/help/function
+lib/R/library/base/help/funprog
lib/R/library/base/help/gc
lib/R/library/base/help/gc.time
lib/R/library/base/help/gctorture
@@ -1249,8 +1268,6 @@ lib/R/library/base/help/getCallingDLL
lib/R/library/base/help/getDLLRegisteredRoutines
lib/R/library/base/help/getLoadedDLLs
lib/R/library/base/help/getNativeSymbolInfo
-lib/R/library/base/help/getenv
-lib/R/library/base/help/getpid
lib/R/library/base/help/gettext
lib/R/library/base/help/getwd
lib/R/library/base/help/gl
@@ -1290,7 +1307,6 @@ lib/R/library/base/help/license
lib/R/library/base/help/list
lib/R/library/base/help/list.files
lib/R/library/base/help/load
-lib/R/library/base/help/localeconv
lib/R/library/base/help/locales
lib/R/library/base/help/logical
lib/R/library/base/help/lower.tri
@@ -1331,12 +1347,12 @@ lib/R/library/base/help/ns-lowlev
lib/R/library/base/help/ns-reflect
lib/R/library/base/help/ns-topenv
lib/R/library/base/help/numeric
+lib/R/library/base/help/numeric_version
lib/R/library/base/help/octmode
lib/R/library/base/help/on.exit
lib/R/library/base/help/options
lib/R/library/base/help/order
lib/R/library/base/help/outer
-lib/R/library/base/help/package_version
lib/R/library/base/help/parse
lib/R/library/base/help/paste
lib/R/library/base/help/path.expand
@@ -1352,7 +1368,6 @@ lib/R/library/base/help/proc.time
lib/R/library/base/help/prod
lib/R/library/base/help/prop.table
lib/R/library/base/help/pushBack
-lib/R/library/base/help/putenv
lib/R/library/base/help/qr
lib/R/library/base/help/qraux
lib/R/library/base/help/quit
@@ -1361,7 +1376,6 @@ lib/R/library/base/help/rank
lib/R/library/base/help/rapply
lib/R/library/base/help/raw
lib/R/library/base/help/rawConversion
-lib/R/library/base/help/read.table
lib/R/library/base/help/readBin
lib/R/library/base/help/readChar
lib/R/library/base/help/readLines
@@ -1403,7 +1417,7 @@ lib/R/library/base/help/sort
lib/R/library/base/help/source
lib/R/library/base/help/split
lib/R/library/base/help/sprintf
-lib/R/library/base/help/stack
+lib/R/library/base/help/srcfile
lib/R/library/base/help/standardGeneric
lib/R/library/base/help/stop
lib/R/library/base/help/stopifnot
@@ -1438,9 +1452,9 @@ lib/R/library/base/help/tilde
lib/R/library/base/help/toString
lib/R/library/base/help/trace
lib/R/library/base/help/traceback
+lib/R/library/base/help/tracemem
lib/R/library/base/help/transform
lib/R/library/base/help/try
-lib/R/library/base/help/type.convert
lib/R/library/base/help/typeof
lib/R/library/base/help/unique
lib/R/library/base/help/unlink
@@ -1456,12 +1470,10 @@ lib/R/library/base/help/which
lib/R/library/base/help/which.min
lib/R/library/base/help/with
lib/R/library/base/help/write
-lib/R/library/base/help/write.table
lib/R/library/base/help/writeLines
lib/R/library/base/help/zMachine
lib/R/library/base/help/zMethods
lib/R/library/base/help/zScript
-lib/R/library/base/help/zip.file.extract
lib/R/library/base/help/zpackages
lib/R/library/base/help/zutils
lib/R/library/base/html/00Index.html
@@ -1477,6 +1489,7 @@ lib/R/library/base/html/DateTimeClasses.html
lib/R/library/base/html/Dates.html
lib/R/library/base/html/Defunct.html
lib/R/library/base/html/Deprecated.html
+lib/R/library/base/html/Encoding.html
lib/R/library/base/html/Extract.data.frame.html
lib/R/library/base/html/Extract.factor.html
lib/R/library/base/html/Extract.html
@@ -1502,15 +1515,22 @@ lib/R/library/base/html/Random-user.html
lib/R/library/base/html/Random.html
lib/R/library/base/html/RdUtils.html
lib/R/library/base/html/Recall.html
+lib/R/library/base/html/Reserved.html
lib/R/library/base/html/Rhome.html
lib/R/library/base/html/Round.html
lib/R/library/base/html/Signals.html
lib/R/library/base/html/Special.html
lib/R/library/base/html/Startup.html
lib/R/library/base/html/Syntax.html
+lib/R/library/base/html/Sys.getenv.html
+lib/R/library/base/html/Sys.getpid.html
+lib/R/library/base/html/Sys.glob.html
lib/R/library/base/html/Sys.info.html
+lib/R/library/base/html/Sys.localeconv.html
+lib/R/library/base/html/Sys.setenv.html
lib/R/library/base/html/Sys.sleep.html
lib/R/library/base/html/Sys.time.html
+lib/R/library/base/html/Sys.which.html
lib/R/library/base/html/Trig.html
lib/R/library/base/html/UseMethod.html
lib/R/library/base/html/Version.html
@@ -1549,6 +1569,7 @@ lib/R/library/base/html/builtins.html
lib/R/library/base/html/by.html
lib/R/library/base/html/c.html
lib/R/library/base/html/call.html
+lib/R/library/base/html/callCC.html
lib/R/library/base/html/capabilities.html
lib/R/library/base/html/cat.html
lib/R/library/base/html/cbind.html
@@ -1571,7 +1592,6 @@ lib/R/library/base/html/connections.html
lib/R/library/base/html/contributors.html
lib/R/library/base/html/converters.html
lib/R/library/base/html/copyright.html
-lib/R/library/base/html/count.fields.html
lib/R/library/base/html/crossprod.html
lib/R/library/base/html/cumsum.html
lib/R/library/base/html/cut.POSIXt.html
@@ -1626,6 +1646,7 @@ lib/R/library/base/html/format.pval.html
lib/R/library/base/html/formatDL.html
lib/R/library/base/html/formatc.html
lib/R/library/base/html/function.html
+lib/R/library/base/html/funprog.html
lib/R/library/base/html/gc.html
lib/R/library/base/html/gc.time.html
lib/R/library/base/html/gctorture.html
@@ -1634,8 +1655,6 @@ lib/R/library/base/html/getCallingDLL.html
lib/R/library/base/html/getDLLRegisteredRoutines.html
lib/R/library/base/html/getLoadedDLLs.html
lib/R/library/base/html/getNativeSymbolInfo.html
-lib/R/library/base/html/getenv.html
-lib/R/library/base/html/getpid.html
lib/R/library/base/html/gettext.html
lib/R/library/base/html/getwd.html
lib/R/library/base/html/gl.html
@@ -1675,7 +1694,6 @@ lib/R/library/base/html/license.html
lib/R/library/base/html/list.files.html
lib/R/library/base/html/list.html
lib/R/library/base/html/load.html
-lib/R/library/base/html/localeconv.html
lib/R/library/base/html/locales.html
lib/R/library/base/html/logical.html
lib/R/library/base/html/lower.tri.html
@@ -1716,12 +1734,12 @@ lib/R/library/base/html/ns-lowlev.html
lib/R/library/base/html/ns-reflect.html
lib/R/library/base/html/ns-topenv.html
lib/R/library/base/html/numeric.html
+lib/R/library/base/html/numeric_version.html
lib/R/library/base/html/octmode.html
lib/R/library/base/html/on.exit.html
lib/R/library/base/html/options.html
lib/R/library/base/html/order.html
lib/R/library/base/html/outer.html
-lib/R/library/base/html/package_version.html
lib/R/library/base/html/parse.html
lib/R/library/base/html/paste.html
lib/R/library/base/html/path.expand.html
@@ -1737,7 +1755,6 @@ lib/R/library/base/html/proc.time.html
lib/R/library/base/html/prod.html
lib/R/library/base/html/prop.table.html
lib/R/library/base/html/pushBack.html
-lib/R/library/base/html/putenv.html
lib/R/library/base/html/qr.html
lib/R/library/base/html/qraux.html
lib/R/library/base/html/quit.html
@@ -1746,7 +1763,6 @@ lib/R/library/base/html/rank.html
lib/R/library/base/html/rapply.html
lib/R/library/base/html/raw.html
lib/R/library/base/html/rawConversion.html
-lib/R/library/base/html/read.table.html
lib/R/library/base/html/readBin.html
lib/R/library/base/html/readChar.html
lib/R/library/base/html/readLines.html
@@ -1788,7 +1804,7 @@ lib/R/library/base/html/sort.html
lib/R/library/base/html/source.html
lib/R/library/base/html/split.html
lib/R/library/base/html/sprintf.html
-lib/R/library/base/html/stack.html
+lib/R/library/base/html/srcfile.html
lib/R/library/base/html/standardGeneric.html
lib/R/library/base/html/stop.html
lib/R/library/base/html/stopifnot.html
@@ -1823,9 +1839,9 @@ lib/R/library/base/html/tilde.html
lib/R/library/base/html/toString.html
lib/R/library/base/html/trace.html
lib/R/library/base/html/traceback.html
+lib/R/library/base/html/tracemem.html
lib/R/library/base/html/transform.html
lib/R/library/base/html/try.html
-lib/R/library/base/html/type.convert.html
lib/R/library/base/html/typeof.html
lib/R/library/base/html/unique.html
lib/R/library/base/html/unlink.html
@@ -1841,12 +1857,10 @@ lib/R/library/base/html/which.html
lib/R/library/base/html/which.min.html
lib/R/library/base/html/with.html
lib/R/library/base/html/write.html
-lib/R/library/base/html/write.table.html
lib/R/library/base/html/writeLines.html
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lib/R/library/base/html/zpackages.html
lib/R/library/base/html/zutils.html
lib/R/library/base/latex/Arithmetic.tex
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lib/R/library/base/latex/Dates.tex
lib/R/library/base/latex/Defunct.tex
lib/R/library/base/latex/Deprecated.tex
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lib/R/library/base/latex/Extract.data.frame.tex
lib/R/library/base/latex/Extract.factor.tex
lib/R/library/base/latex/Extract.tex
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lib/R/library/base/latex/Random.tex
lib/R/library/base/latex/RdUtils.tex
lib/R/library/base/latex/Recall.tex
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lib/R/library/base/latex/Rhome.tex
lib/R/library/base/latex/Round.tex
lib/R/library/base/latex/Signals.tex
lib/R/library/base/latex/Special.tex
lib/R/library/base/latex/Startup.tex
lib/R/library/base/latex/Syntax.tex
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lib/R/library/base/latex/Sys.info.tex
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lib/R/library/base/latex/Sys.sleep.tex
lib/R/library/base/latex/Sys.time.tex
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lib/R/library/base/latex/Trig.tex
lib/R/library/base/latex/UseMethod.tex
lib/R/library/base/latex/Version.tex
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lib/R/library/base/latex/by.tex
lib/R/library/base/latex/c.tex
lib/R/library/base/latex/call.tex
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lib/R/library/base/latex/capabilities.tex
lib/R/library/base/latex/cat.tex
lib/R/library/base/latex/cbind.tex
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lib/R/library/base/latex/contributors.tex
lib/R/library/base/latex/converters.tex
lib/R/library/base/latex/copyright.tex
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lib/R/library/base/latex/crossprod.tex
lib/R/library/base/latex/cumsum.tex
lib/R/library/base/latex/cut.POSIXt.tex
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lib/R/library/base/latex/formatDL.tex
lib/R/library/base/latex/formatc.tex
lib/R/library/base/latex/function.tex
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lib/R/library/base/latex/gc.tex
lib/R/library/base/latex/gc.time.tex
lib/R/library/base/latex/gctorture.tex
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lib/R/library/base/latex/getDLLRegisteredRoutines.tex
lib/R/library/base/latex/getLoadedDLLs.tex
lib/R/library/base/latex/getNativeSymbolInfo.tex
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lib/R/library/base/latex/gettext.tex
lib/R/library/base/latex/getwd.tex
lib/R/library/base/latex/gl.tex
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lib/R/library/base/latex/list.files.tex
lib/R/library/base/latex/list.tex
lib/R/library/base/latex/load.tex
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lib/R/library/base/latex/locales.tex
lib/R/library/base/latex/logical.tex
lib/R/library/base/latex/lower.tri.tex
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lib/R/library/base/latex/ns-reflect.tex
lib/R/library/base/latex/ns-topenv.tex
lib/R/library/base/latex/numeric.tex
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lib/R/library/base/latex/octmode.tex
lib/R/library/base/latex/on.exit.tex
lib/R/library/base/latex/options.tex
lib/R/library/base/latex/order.tex
lib/R/library/base/latex/outer.tex
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lib/R/library/base/latex/parse.tex
lib/R/library/base/latex/paste.tex
lib/R/library/base/latex/path.expand.tex
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lib/R/library/base/latex/prod.tex
lib/R/library/base/latex/prop.table.tex
lib/R/library/base/latex/pushBack.tex
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lib/R/library/base/latex/qr.tex
lib/R/library/base/latex/qraux.tex
lib/R/library/base/latex/quit.tex
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lib/R/library/base/latex/rapply.tex
lib/R/library/base/latex/raw.tex
lib/R/library/base/latex/rawConversion.tex
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lib/R/library/base/latex/readBin.tex
lib/R/library/base/latex/readChar.tex
lib/R/library/base/latex/readLines.tex
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lib/R/library/base/latex/source.tex
lib/R/library/base/latex/split.tex
lib/R/library/base/latex/sprintf.tex
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lib/R/library/base/latex/standardGeneric.tex
lib/R/library/base/latex/stop.tex
lib/R/library/base/latex/stopifnot.tex
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lib/R/library/base/latex/toString.tex
lib/R/library/base/latex/trace.tex
lib/R/library/base/latex/traceback.tex
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lib/R/library/base/latex/transform.tex
lib/R/library/base/latex/try.tex
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lib/R/library/base/latex/typeof.tex
lib/R/library/base/latex/unique.tex
lib/R/library/base/latex/unlink.tex
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lib/R/library/base/latex/which.tex
lib/R/library/base/latex/with.tex
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lib/R/library/base/latex/write.tex
lib/R/library/base/latex/writeLines.tex
lib/R/library/base/latex/zMachine.tex
lib/R/library/base/latex/zMethods.tex
lib/R/library/base/latex/zScript.tex
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lib/R/library/base/latex/zpackages.tex
lib/R/library/base/latex/zutils.tex
lib/R/library/base/man/base.Rd.gz
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lib/R/library/cluster/R-ex/coef.hclust.R
lib/R/library/cluster/R-ex/daisy.R
lib/R/library/cluster/R-ex/diana.R
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lib/R/library/cluster/R-ex/ellipsoidhull.R
lib/R/library/cluster/R-ex/fanny.R
lib/R/library/cluster/R-ex/flower.R
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lib/R/library/cluster/help/coef.hclust
lib/R/library/cluster/help/daisy
lib/R/library/cluster/help/diana
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lib/R/library/cluster/help/dissimilarity.object
lib/R/library/cluster/help/ellipsoidhull
lib/R/library/cluster/help/fanny
@@ -2750,7 +2764,6 @@ lib/R/library/cluster/html/cluster-internal.html
lib/R/library/cluster/html/coef.hclust.html
lib/R/library/cluster/html/daisy.html
lib/R/library/cluster/html/diana.html
-lib/R/library/cluster/html/diana.object.html
lib/R/library/cluster/html/dissimilarity.object.html
lib/R/library/cluster/html/ellipsoidhull.html
lib/R/library/cluster/html/fanny.html
@@ -2804,7 +2817,6 @@ lib/R/library/cluster/latex/clusplot.tex
lib/R/library/cluster/latex/cluster-internal.tex
lib/R/library/cluster/latex/coef.hclust.tex
lib/R/library/cluster/latex/daisy.tex
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lib/R/library/cluster/latex/diana.tex
lib/R/library/cluster/latex/dissimilarity.object.tex
lib/R/library/cluster/latex/ellipsoidhull.tex
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lib/R/library/cluster/latex/xclara.tex
lib/R/library/cluster/libs/cluster.so
lib/R/library/cluster/man/cluster.Rd.gz
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lib/R/library/datasets/CONTENTS
lib/R/library/datasets/DESCRIPTION
lib/R/library/datasets/INDEX
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lib/R/library/datasets/R-ex/cars.R
lib/R/library/datasets/R-ex/chickwts.R
lib/R/library/datasets/R-ex/co2.R
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lib/R/library/datasets/R-ex/discoveries.R
lib/R/library/datasets/R-ex/esoph.R
lib/R/library/datasets/R-ex/euro.R
@@ -2976,6 +3019,7 @@ lib/R/library/datasets/help/beavers
lib/R/library/datasets/help/cars
lib/R/library/datasets/help/chickwts
lib/R/library/datasets/help/co2
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lib/R/library/datasets/help/datasets-package
lib/R/library/datasets/help/discoveries
lib/R/library/datasets/help/esoph
@@ -3061,6 +3105,7 @@ lib/R/library/datasets/html/beavers.html
lib/R/library/datasets/html/cars.html
lib/R/library/datasets/html/chickwts.html
lib/R/library/datasets/html/co2.html
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lib/R/library/datasets/html/datasets-package.html
lib/R/library/datasets/html/discoveries.html
lib/R/library/datasets/html/esoph.html
@@ -3145,6 +3190,7 @@ lib/R/library/datasets/latex/beavers.tex
lib/R/library/datasets/latex/cars.tex
lib/R/library/datasets/latex/chickwts.tex
lib/R/library/datasets/latex/co2.tex
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lib/R/library/datasets/latex/datasets-package.tex
lib/R/library/datasets/latex/discoveries.tex
lib/R/library/datasets/latex/esoph.tex
@@ -3204,6 +3250,7 @@ lib/R/library/foreign/R-ex/read.spss.R
lib/R/library/foreign/R-ex/read.ssd.R
lib/R/library/foreign/R-ex/read.systat.R
lib/R/library/foreign/R-ex/read.xport.R
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lib/R/library/foreign/R-ex/write.dbf.R
lib/R/library/foreign/R-ex/write.dta.R
lib/R/library/foreign/R-ex/write.foreign.R
@@ -3216,6 +3263,7 @@ lib/R/library/foreign/files/sids.dbf
lib/R/library/foreign/help/AnIndex
lib/R/library/foreign/help/lookup.xport
lib/R/library/foreign/help/read.S
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lib/R/library/foreign/help/read.dbf
lib/R/library/foreign/help/read.dta
lib/R/library/foreign/help/read.epiinfo
@@ -3225,12 +3273,14 @@ lib/R/library/foreign/help/read.spss
lib/R/library/foreign/help/read.ssd
lib/R/library/foreign/help/read.systat
lib/R/library/foreign/help/read.xport
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lib/R/library/foreign/help/write.dbf
lib/R/library/foreign/help/write.dta
lib/R/library/foreign/help/write.foreign
lib/R/library/foreign/html/00Index.html
lib/R/library/foreign/html/lookup.xport.html
lib/R/library/foreign/html/read.S.html
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lib/R/library/foreign/html/read.dbf.html
lib/R/library/foreign/html/read.dta.html
lib/R/library/foreign/html/read.epiinfo.html
@@ -3240,11 +3290,13 @@ lib/R/library/foreign/html/read.spss.html
lib/R/library/foreign/html/read.ssd.html
lib/R/library/foreign/html/read.systat.html
lib/R/library/foreign/html/read.xport.html
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lib/R/library/foreign/html/write.dbf.html
lib/R/library/foreign/html/write.dta.html
lib/R/library/foreign/html/write.foreign.html
lib/R/library/foreign/latex/lookup.xport.tex
lib/R/library/foreign/latex/read.S.tex
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lib/R/library/foreign/latex/read.dbf.tex
lib/R/library/foreign/latex/read.dta.tex
lib/R/library/foreign/latex/read.epiinfo.tex
@@ -3254,6 +3306,7 @@ lib/R/library/foreign/latex/read.spss.tex
lib/R/library/foreign/latex/read.ssd.tex
lib/R/library/foreign/latex/read.systat.tex
lib/R/library/foreign/latex/read.xport.tex
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lib/R/library/foreign/latex/write.dbf.tex
lib/R/library/foreign/latex/write.dta.tex
lib/R/library/foreign/latex/write.foreign.tex
@@ -3295,6 +3348,7 @@ lib/R/library/grDevices/R-ex/hcl.R
lib/R/library/grDevices/R-ex/hsv.R
lib/R/library/grDevices/R-ex/make.rgb.R
lib/R/library/grDevices/R-ex/n2mfrow.R
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lib/R/library/grDevices/R-ex/palette.R
lib/R/library/grDevices/R-ex/palettes.R
lib/R/library/grDevices/R-ex/pdf.R
@@ -3311,6 +3365,7 @@ lib/R/library/grDevices/R-ex/rgb2hsv.R
lib/R/library/grDevices/R-ex/trans3d.R
lib/R/library/grDevices/R-ex/x11Fonts.R
lib/R/library/grDevices/R-ex/xy.coords.R
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lib/R/library/grDevices/R-ex/xyz.coords.R
lib/R/library/grDevices/R/grDevices
lib/R/library/grDevices/R/grDevices.rdb
@@ -3427,6 +3482,7 @@ lib/R/library/grDevices/help/Devices
lib/R/library/grDevices/help/Hershey
lib/R/library/grDevices/help/Japanese
lib/R/library/grDevices/help/Type1Font
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lib/R/library/grDevices/help/boxplot.stats
lib/R/library/grDevices/help/check.options
lib/R/library/grDevices/help/chull
@@ -3472,12 +3528,14 @@ lib/R/library/grDevices/help/x11
lib/R/library/grDevices/help/x11Fonts
lib/R/library/grDevices/help/xfig
lib/R/library/grDevices/help/xy.coords
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lib/R/library/grDevices/help/xyz.coords
lib/R/library/grDevices/html/00Index.html
lib/R/library/grDevices/html/Devices.html
lib/R/library/grDevices/html/Hershey.html
lib/R/library/grDevices/html/Japanese.html
lib/R/library/grDevices/html/Type1Font.html
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lib/R/library/grDevices/html/boxplot.stats.html
lib/R/library/grDevices/html/check.options.html
lib/R/library/grDevices/html/chull.html
@@ -3523,11 +3581,13 @@ lib/R/library/grDevices/html/x11.html
lib/R/library/grDevices/html/x11Fonts.html
lib/R/library/grDevices/html/xfig.html
lib/R/library/grDevices/html/xy.coords.html
+lib/R/library/grDevices/html/xyTable.html
lib/R/library/grDevices/html/xyz.coords.html
lib/R/library/grDevices/latex/Devices.tex
lib/R/library/grDevices/latex/Hershey.tex
lib/R/library/grDevices/latex/Japanese.tex
lib/R/library/grDevices/latex/Type1Font.tex
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lib/R/library/grDevices/latex/boxplot.stats.tex
lib/R/library/grDevices/latex/check.options.tex
lib/R/library/grDevices/latex/chull.tex
@@ -3573,6 +3633,7 @@ lib/R/library/grDevices/latex/x11.tex
lib/R/library/grDevices/latex/x11Fonts.tex
lib/R/library/grDevices/latex/xfig.tex
lib/R/library/grDevices/latex/xy.coords.tex
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lib/R/library/grDevices/latex/xyz.coords.tex
lib/R/library/grDevices/libs/grDevices.so
lib/R/library/grDevices/man/grDevices.Rd.gz
@@ -3582,14 +3643,16 @@ lib/R/library/grDevices/po/en_GB/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/en_GB/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/fr/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/fr/LC_MESSAGES/grDevices.mo
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lib/R/library/grDevices/po/it/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/it/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/ja/LC_MESSAGES/R-grDevices.mo
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lib/R/library/grDevices/po/ko/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/ko/LC_MESSAGES/grDevices.mo
lib/R/library/grDevices/po/ru/LC_MESSAGES/R-grDevices.mo
lib/R/library/grDevices/po/ru/LC_MESSAGES/grDevices.mo
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lib/R/library/graphics/CONTENTS
lib/R/library/graphics/DESCRIPTION
lib/R/library/graphics/INDEX
@@ -3619,6 +3682,7 @@ lib/R/library/graphics/R-ex/fourfoldplot.R
lib/R/library/graphics/R-ex/grid.R
lib/R/library/graphics/R-ex/hist.POSIXt.R
lib/R/library/graphics/R-ex/hist.R
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lib/R/library/graphics/R-ex/image.R
lib/R/library/graphics/R-ex/layout.R
lib/R/library/graphics/R-ex/legend.R
@@ -3657,6 +3721,7 @@ lib/R/library/graphics/R-ex/symbols.R
lib/R/library/graphics/R-ex/text.R
lib/R/library/graphics/R-ex/title.R
lib/R/library/graphics/R-ex/units.R
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lib/R/library/graphics/R/graphics
lib/R/library/graphics/R/graphics.rdb
lib/R/library/graphics/R/graphics.rdx
@@ -3730,6 +3795,7 @@ lib/R/library/graphics/help/symbols
lib/R/library/graphics/help/text
lib/R/library/graphics/help/title
lib/R/library/graphics/help/units
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lib/R/library/graphics/help/zAxis
lib/R/library/graphics/html/00Index.html
lib/R/library/graphics/html/abline.html
@@ -3795,6 +3861,7 @@ lib/R/library/graphics/html/symbols.html
lib/R/library/graphics/html/text.html
lib/R/library/graphics/html/title.html
lib/R/library/graphics/html/units.html
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lib/R/library/graphics/html/zAxis.html
lib/R/library/graphics/latex/abline.tex
lib/R/library/graphics/latex/arrows.tex
@@ -3859,6 +3926,7 @@ lib/R/library/graphics/latex/symbols.tex
lib/R/library/graphics/latex/text.tex
lib/R/library/graphics/latex/title.tex
lib/R/library/graphics/latex/units.tex
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lib/R/library/graphics/latex/zAxis.tex
lib/R/library/graphics/man/graphics.Rd.gz
lib/R/library/graphics/po/en@quot/LC_MESSAGES/R-graphics.mo
@@ -3867,6 +3935,7 @@ lib/R/library/graphics/po/it/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ja/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ko/LC_MESSAGES/R-graphics.mo
lib/R/library/graphics/po/ru/LC_MESSAGES/R-graphics.mo
+lib/R/library/graphics/po/zh_CN/LC_MESSAGES/R-graphics.mo
lib/R/library/grid/CONTENTS
lib/R/library/grid/DESCRIPTION
lib/R/library/grid/INDEX
@@ -3897,6 +3966,7 @@ lib/R/library/grid/R-ex/grid.grob.R
lib/R/library/grid/R-ex/grid.layout.R
lib/R/library/grid/R-ex/grid.lines.R
lib/R/library/grid/R-ex/grid.locator.R
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lib/R/library/grid/R-ex/grid.move.to.R
lib/R/library/grid/R-ex/grid.plot.and.legend.R
lib/R/library/grid/R-ex/grid.polygon.R
@@ -3978,6 +4048,7 @@ lib/R/library/grid/help/grid.grob
lib/R/library/grid/help/grid.layout
lib/R/library/grid/help/grid.lines
lib/R/library/grid/help/grid.locator
+lib/R/library/grid/help/grid.ls
lib/R/library/grid/help/grid.move.to
lib/R/library/grid/help/grid.newpage
lib/R/library/grid/help/grid.pack
@@ -4051,6 +4122,7 @@ lib/R/library/grid/html/grid.grob.html
lib/R/library/grid/html/grid.layout.html
lib/R/library/grid/html/grid.lines.html
lib/R/library/grid/html/grid.locator.html
+lib/R/library/grid/html/grid.ls.html
lib/R/library/grid/html/grid.move.to.html
lib/R/library/grid/html/grid.newpage.html
lib/R/library/grid/html/grid.pack.html
@@ -4123,6 +4195,7 @@ lib/R/library/grid/latex/grid.grob.tex
lib/R/library/grid/latex/grid.layout.tex
lib/R/library/grid/latex/grid.lines.tex
lib/R/library/grid/latex/grid.locator.tex
+lib/R/library/grid/latex/grid.ls.tex
lib/R/library/grid/latex/grid.move.to.tex
lib/R/library/grid/latex/grid.newpage.tex
lib/R/library/grid/latex/grid.pack.tex
@@ -4176,6 +4249,8 @@ lib/R/library/grid/po/ko/LC_MESSAGES/grid.mo
lib/R/library/grid/po/pt_BR/LC_MESSAGES/grid.mo
lib/R/library/grid/po/ru/LC_MESSAGES/R-grid.mo
lib/R/library/grid/po/ru/LC_MESSAGES/grid.mo
+lib/R/library/grid/po/zh_CN/LC_MESSAGES/R-grid.mo
+lib/R/library/grid/po/zh_CN/LC_MESSAGES/grid.mo
lib/R/library/lattice/CONTENTS
lib/R/library/lattice/COPYING
lib/R/library/lattice/Changes
@@ -4190,6 +4265,7 @@ lib/R/library/lattice/Meta/package.rds
lib/R/library/lattice/NAMESPACE
lib/R/library/lattice/R-ex/Lattice.R
lib/R/library/lattice/R-ex/axis.default.R
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lib/R/library/lattice/R-ex/barchart.table.R
lib/R/library/lattice/R-ex/barley.R
lib/R/library/lattice/R-ex/cloud.R
@@ -4198,11 +4274,14 @@ lib/R/library/lattice/R-ex/ethanol.R
lib/R/library/lattice/R-ex/histogram.R
lib/R/library/lattice/R-ex/interaction.R
lib/R/library/lattice/R-ex/lattice.options.R
+lib/R/library/lattice/R-ex/level.colors.R
lib/R/library/lattice/R-ex/levelplot.R
lib/R/library/lattice/R-ex/make.groups.R
lib/R/library/lattice/R-ex/melanoma.R
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lib/R/library/lattice/R-ex/panel.bwplot.R
lib/R/library/lattice/R-ex/panel.violin.R
+lib/R/library/lattice/R-ex/panel.xyplot.R
lib/R/library/lattice/R-ex/print.trellis.R
lib/R/library/lattice/R-ex/qq.R
lib/R/library/lattice/R-ex/qqmath.R
@@ -4240,6 +4319,7 @@ lib/R/library/lattice/help/histogram
lib/R/library/lattice/help/interaction
lib/R/library/lattice/help/lattice.options
lib/R/library/lattice/help/latticeParseFormula
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lib/R/library/lattice/help/levelplot
lib/R/library/lattice/help/llines
lib/R/library/lattice/help/lset
@@ -4265,6 +4345,7 @@ lib/R/library/lattice/help/panel.stripplot
lib/R/library/lattice/help/panel.superpose
lib/R/library/lattice/help/panel.violin
lib/R/library/lattice/help/panel.xyplot
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lib/R/library/lattice/help/prepanel.functions
lib/R/library/lattice/help/print.trellis
lib/R/library/lattice/help/qq
@@ -4298,6 +4379,7 @@ lib/R/library/lattice/html/histogram.html
lib/R/library/lattice/html/interaction.html
lib/R/library/lattice/html/lattice.options.html
lib/R/library/lattice/html/latticeParseFormula.html
+lib/R/library/lattice/html/level.colors.html
lib/R/library/lattice/html/levelplot.html
lib/R/library/lattice/html/llines.html
lib/R/library/lattice/html/lset.html
@@ -4323,6 +4405,7 @@ lib/R/library/lattice/html/panel.stripplot.html
lib/R/library/lattice/html/panel.superpose.html
lib/R/library/lattice/html/panel.violin.html
lib/R/library/lattice/html/panel.xyplot.html
+lib/R/library/lattice/html/prepanel.default.html
lib/R/library/lattice/html/prepanel.functions.html
lib/R/library/lattice/html/print.trellis.html
lib/R/library/lattice/html/qq.html
@@ -4355,6 +4438,7 @@ lib/R/library/lattice/latex/histogram.tex
lib/R/library/lattice/latex/interaction.tex
lib/R/library/lattice/latex/lattice.options.tex
lib/R/library/lattice/latex/latticeParseFormula.tex
+lib/R/library/lattice/latex/level.colors.tex
lib/R/library/lattice/latex/levelplot.tex
lib/R/library/lattice/latex/llines.tex
lib/R/library/lattice/latex/lset.tex
@@ -4380,6 +4464,7 @@ lib/R/library/lattice/latex/panel.stripplot.tex
lib/R/library/lattice/latex/panel.superpose.tex
lib/R/library/lattice/latex/panel.violin.tex
lib/R/library/lattice/latex/panel.xyplot.tex
+lib/R/library/lattice/latex/prepanel.default.tex
lib/R/library/lattice/latex/prepanel.functions.tex
lib/R/library/lattice/latex/print.trellis.tex
lib/R/library/lattice/latex/qq.tex
@@ -4411,6 +4496,7 @@ lib/R/library/methods/R-ex/GenericFunctions.R
lib/R/library/methods/R-ex/NextMethod.R
lib/R/library/methods/R-ex/RMethodUtils.R
lib/R/library/methods/R-ex/S4groupGeneric.R
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lib/R/library/methods/R-ex/as.R
lib/R/library/methods/R-ex/canCoerce.R
lib/R/library/methods/R-ex/cbind2.R
@@ -4418,8 +4504,10 @@ lib/R/library/methods/R-ex/getClass.R
lib/R/library/methods/R-ex/getMethod.R
lib/R/library/methods/R-ex/getPackageName.R
lib/R/library/methods/R-ex/hasArg.R
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lib/R/library/methods/R-ex/is.R
lib/R/library/methods/R-ex/isSealedMethod.R
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lib/R/library/methods/R-ex/new.R
lib/R/library/methods/R-ex/promptClass.R
lib/R/library/methods/R-ex/representation.R
@@ -4470,10 +4558,12 @@ lib/R/library/methods/help/getClass
lib/R/library/methods/help/getMethod
lib/R/library/methods/help/getPackageName
lib/R/library/methods/help/hasArg
+lib/R/library/methods/help/implicitGeneric
lib/R/library/methods/help/initialize-methods
lib/R/library/methods/help/is
lib/R/library/methods/help/isSealedMethod
lib/R/library/methods/help/languageEl
+lib/R/library/methods/help/method.skeleton
lib/R/library/methods/help/methodUtilities
lib/R/library/methods/help/methods-package
lib/R/library/methods/help/new
@@ -4529,10 +4619,12 @@ lib/R/library/methods/html/getClass.html
lib/R/library/methods/html/getMethod.html
lib/R/library/methods/html/getPackageName.html
lib/R/library/methods/html/hasArg.html
+lib/R/library/methods/html/implicitGeneric.html
lib/R/library/methods/html/initialize-methods.html
lib/R/library/methods/html/is.html
lib/R/library/methods/html/isSealedMethod.html
lib/R/library/methods/html/languageEl.html
+lib/R/library/methods/html/method.skeleton.html
lib/R/library/methods/html/methodUtilities.html
lib/R/library/methods/html/methods-package.html
lib/R/library/methods/html/new.html
@@ -4587,10 +4679,12 @@ lib/R/library/methods/latex/getClass.tex
lib/R/library/methods/latex/getMethod.tex
lib/R/library/methods/latex/getPackageName.tex
lib/R/library/methods/latex/hasArg.tex
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lib/R/library/methods/latex/initialize-methods.tex
lib/R/library/methods/latex/is.tex
lib/R/library/methods/latex/isSealedMethod.tex
lib/R/library/methods/latex/languageEl.tex
+lib/R/library/methods/latex/method.skeleton.tex
lib/R/library/methods/latex/methodUtilities.tex
lib/R/library/methods/latex/methods-package.tex
lib/R/library/methods/latex/new.tex
@@ -4618,10 +4712,15 @@ lib/R/library/methods/po/en@quot/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/en@quot/LC_MESSAGES/methods.mo
lib/R/library/methods/po/fr/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/fr/LC_MESSAGES/methods.mo
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lib/R/library/methods/po/ko/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/pt_BR/LC_MESSAGES/R-methods.mo
lib/R/library/methods/po/pt_BR/LC_MESSAGES/methods.mo
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lib/R/library/methods/po/zh_CN/LC_MESSAGES/R-methods.mo
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lib/R/library/mgcv/CITATION
lib/R/library/mgcv/CONTENTS
lib/R/library/mgcv/DESCRIPTION
@@ -4648,6 +4747,7 @@ lib/R/library/mgcv/R-ex/get.var.R
lib/R/library/mgcv/R-ex/magic.R
lib/R/library/mgcv/R-ex/mgcv-package.R
lib/R/library/mgcv/R-ex/mgcv.R
+lib/R/library/mgcv/R-ex/model.matrix.gam.R
lib/R/library/mgcv/R-ex/mono.con.R
lib/R/library/mgcv/R-ex/mroot.R
lib/R/library/mgcv/R-ex/new.name.R
@@ -4710,6 +4810,7 @@ lib/R/library/mgcv/help/magic.post.proc
lib/R/library/mgcv/help/mgcv
lib/R/library/mgcv/help/mgcv-package
lib/R/library/mgcv/help/mgcv.control
+lib/R/library/mgcv/help/model.matrix.gam
lib/R/library/mgcv/help/mono.con
lib/R/library/mgcv/help/mroot
lib/R/library/mgcv/help/new.name
@@ -4772,6 +4873,7 @@ lib/R/library/mgcv/html/magic.post.proc.html
lib/R/library/mgcv/html/mgcv-package.html
lib/R/library/mgcv/html/mgcv.control.html
lib/R/library/mgcv/html/mgcv.html
+lib/R/library/mgcv/html/model.matrix.gam.html
lib/R/library/mgcv/html/mono.con.html
lib/R/library/mgcv/html/mroot.html
lib/R/library/mgcv/html/new.name.html
@@ -4833,6 +4935,7 @@ lib/R/library/mgcv/latex/magic.tex
lib/R/library/mgcv/latex/mgcv-package.tex
lib/R/library/mgcv/latex/mgcv.control.tex
lib/R/library/mgcv/latex/mgcv.tex
+lib/R/library/mgcv/latex/model.matrix.gam.tex
lib/R/library/mgcv/latex/mono.con.tex
lib/R/library/mgcv/latex/mroot.tex
lib/R/library/mgcv/latex/new.name.tex
@@ -6018,6 +6121,25 @@ lib/R/library/nnet/libs/nnet.so
lib/R/library/nnet/man/nnet.Rd.gz
lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo
+lib/R/library/rcompgen/CONTENTS
+lib/R/library/rcompgen/COPYING
+lib/R/library/rcompgen/DESCRIPTION
+lib/R/library/rcompgen/INDEX
+lib/R/library/rcompgen/Meta/Rd.rds
+lib/R/library/rcompgen/Meta/hsearch.rds
+lib/R/library/rcompgen/Meta/nsInfo.rds
+lib/R/library/rcompgen/Meta/package.rds
+lib/R/library/rcompgen/NAMESPACE
+lib/R/library/rcompgen/R/rcompgen
+lib/R/library/rcompgen/R/rcompgen.rdb
+lib/R/library/rcompgen/R/rcompgen.rdx
+lib/R/library/rcompgen/examples/altesscomp.el
+lib/R/library/rcompgen/help/AnIndex
+lib/R/library/rcompgen/help/rcompgen
+lib/R/library/rcompgen/html/00Index.html
+lib/R/library/rcompgen/html/rcompgen.html
+lib/R/library/rcompgen/latex/rcompgen.tex
+lib/R/library/rcompgen/man/rcompgen.Rd.gz
lib/R/library/rpart/CONTENTS
lib/R/library/rpart/DESCRIPTION
lib/R/library/rpart/INDEX
@@ -6346,6 +6468,8 @@ lib/R/library/splines/po/pt_BR/LC_MESSAGES/R-splines.mo
lib/R/library/splines/po/pt_BR/LC_MESSAGES/splines.mo
lib/R/library/splines/po/ru/LC_MESSAGES/R-splines.mo
lib/R/library/splines/po/ru/LC_MESSAGES/splines.mo
+lib/R/library/splines/po/zh_CN/LC_MESSAGES/R-splines.mo
+lib/R/library/splines/po/zh_CN/LC_MESSAGES/splines.mo
lib/R/library/stats/CONTENTS
lib/R/library/stats/COPYRIGHTS.modreg
lib/R/library/stats/DESCRIPTION
@@ -7562,6 +7686,7 @@ lib/R/library/stats/po/pt_BR/LC_MESSAGES/stats.mo
lib/R/library/stats/po/ru/LC_MESSAGES/R-stats.mo
lib/R/library/stats/po/ru/LC_MESSAGES/stats.mo
lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
+lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
lib/R/library/stats4/CONTENTS
lib/R/library/stats4/DESCRIPTION
lib/R/library/stats4/INDEX
@@ -7573,8 +7698,9 @@ lib/R/library/stats4/NAMESPACE
lib/R/library/stats4/R-ex/BIC.R
lib/R/library/stats4/R-ex/mle.R
lib/R/library/stats4/R-ex/update-methods.R
-lib/R/library/stats4/R/all.rda
lib/R/library/stats4/R/stats4
+lib/R/library/stats4/R/stats4.rdb
+lib/R/library/stats4/R/stats4.rdx
lib/R/library/stats4/help/AIC-methods
lib/R/library/stats4/help/AnIndex
lib/R/library/stats4/help/BIC
@@ -7633,6 +7759,7 @@ lib/R/library/stats4/po/ja/LC_MESSAGES/R-stats4.mo
lib/R/library/stats4/po/ko/LC_MESSAGES/R-stats4.mo
lib/R/library/stats4/po/pt_BR/LC_MESSAGES/R-stats4.mo
lib/R/library/stats4/po/ru/LC_MESSAGES/R-stats4.mo
+lib/R/library/stats4/po/zh_CN/LC_MESSAGES/R-stats4.mo
lib/R/library/survival/CONTENTS
lib/R/library/survival/COPYING
lib/R/library/survival/DESCRIPTION
@@ -7679,6 +7806,7 @@ lib/R/library/survival/R-ex/summary.survfit.R
lib/R/library/survival/R-ex/survSplit.R
lib/R/library/survival/R-ex/survdiff.R
lib/R/library/survival/R-ex/survexp.R
+lib/R/library/survival/R-ex/survexp.us.R
lib/R/library/survival/R-ex/survfit.R
lib/R/library/survival/R-ex/survobrien.R
lib/R/library/survival/R-ex/survreg.R
@@ -7952,12 +8080,18 @@ lib/R/library/tcltk/latex/tkpager.tex
lib/R/library/tcltk/libs/tcltk.so
lib/R/library/tcltk/man/tcltk.Rd.gz
lib/R/library/tcltk/po/en@quot/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/en@quot/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/fr/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/fr/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/it/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/ja/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/ja/LC_MESSAGES/tcltk.mo
lib/R/library/tcltk/po/ko/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/pt_BR/LC_MESSAGES/R-tcltk.mo
lib/R/library/tcltk/po/ru/LC_MESSAGES/R-tcltk.mo
+lib/R/library/tcltk/po/ru/LC_MESSAGES/tcltk.mo
+lib/R/library/tcltk/po/zh_CN/LC_MESSAGES/R-tcltk.mo
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lib/R/library/tools/CONTENTS
lib/R/library/tools/DESCRIPTION
lib/R/library/tools/INDEX
@@ -8074,12 +8208,15 @@ lib/R/library/tools/po/fr/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/fr/LC_MESSAGES/tools.mo
lib/R/library/tools/po/it/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/it/LC_MESSAGES/tools.mo
+lib/R/library/tools/po/ja/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ja/LC_MESSAGES/tools.mo
lib/R/library/tools/po/ko/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ko/LC_MESSAGES/tools.mo
lib/R/library/tools/po/pt_BR/LC_MESSAGES/tools.mo
lib/R/library/tools/po/ru/LC_MESSAGES/R-tools.mo
lib/R/library/tools/po/ru/LC_MESSAGES/tools.mo
+lib/R/library/tools/po/zh_CN/LC_MESSAGES/R-tools.mo
+lib/R/library/tools/po/zh_CN/LC_MESSAGES/tools.mo
lib/R/library/utils/CONTENTS
lib/R/library/utils/DESCRIPTION
lib/R/library/utils/INDEX
@@ -8088,9 +8225,11 @@ lib/R/library/utils/Meta/hsearch.rds
lib/R/library/utils/Meta/nsInfo.rds
lib/R/library/utils/Meta/package.rds
lib/R/library/utils/NAMESPACE
+lib/R/library/utils/R-ex/RShowDoc.R
lib/R/library/utils/R-ex/RSiteSearch.R
lib/R/library/utils/R-ex/Rprof.R
lib/R/library/utils/R-ex/Rprofmem.R
+lib/R/library/utils/R-ex/Rscript.R
lib/R/library/utils/R-ex/SHLIB.R
lib/R/library/utils/R-ex/Sweave.R
lib/R/library/utils/R-ex/SweaveSyntConv.R
@@ -8104,6 +8243,7 @@ lib/R/library/utils/R-ex/citEntry.R
lib/R/library/utils/R-ex/citation.R
lib/R/library/utils/R-ex/combn.R
lib/R/library/utils/R-ex/compareVersion.R
+lib/R/library/utils/R-ex/count.fields.R
lib/R/library/utils/R-ex/data.R
lib/R/library/utils/R-ex/dataentry.R
lib/R/library/utils/R-ex/debugger.R
@@ -8112,7 +8252,9 @@ lib/R/library/utils/R-ex/edit.R
lib/R/library/utils/R-ex/edit.data.frame.R
lib/R/library/utils/R-ex/example.R
lib/R/library/utils/R-ex/file.edit.R
+lib/R/library/utils/R-ex/filetest.R
lib/R/library/utils/R-ex/fix.R
+lib/R/library/utils/R-ex/format.R
lib/R/library/utils/R-ex/getAnywhere.R
lib/R/library/utils/R-ex/getFromNamespace.R
lib/R/library/utils/R-ex/getS3method.R
@@ -8144,15 +8286,19 @@ lib/R/library/utils/R-ex/read.fwf.R
lib/R/library/utils/R-ex/read.socket.R
lib/R/library/utils/R-ex/readNEWS.R
lib/R/library/utils/R-ex/recover.R
+lib/R/library/utils/R-ex/relist.R
+lib/R/library/utils/R-ex/roman.R
lib/R/library/utils/R-ex/savehistory.R
lib/R/library/utils/R-ex/select.list.R
lib/R/library/utils/R-ex/sessionInfo.R
+lib/R/library/utils/R-ex/stack.R
lib/R/library/utils/R-ex/str.R
lib/R/library/utils/R-ex/summaryRprof.R
-lib/R/library/utils/R-ex/tracemem.R
lib/R/library/utils/R-ex/update.packages.R
lib/R/library/utils/R-ex/url.show.R
lib/R/library/utils/R-ex/vignette.R
+lib/R/library/utils/R-ex/withVisible.R
+lib/R/library/utils/R-ex/write.table.R
lib/R/library/utils/R/utils
lib/R/library/utils/R/utils.rdb
lib/R/library/utils/R/utils.rdx
@@ -8165,9 +8311,11 @@ lib/R/library/utils/help/LINK
lib/R/library/utils/help/PkgUtils
lib/R/library/utils/help/REMOVE
lib/R/library/utils/help/RHOME
+lib/R/library/utils/help/RShowDoc
lib/R/library/utils/help/RSiteSearch
lib/R/library/utils/help/Rprof
lib/R/library/utils/help/Rprofmem
+lib/R/library/utils/help/Rscript
lib/R/library/utils/help/Rtangle
lib/R/library/utils/help/RweaveLatex
lib/R/library/utils/help/SHLIB
@@ -8175,6 +8323,7 @@ lib/R/library/utils/help/Sweave
lib/R/library/utils/help/SweaveSyntConv
lib/R/library/utils/help/SweaveUtils
lib/R/library/utils/help/URLencode
+lib/R/library/utils/help/View
lib/R/library/utils/help/alarm
lib/R/library/utils/help/apropos
lib/R/library/utils/help/browseEnv
@@ -8187,6 +8336,7 @@ lib/R/library/utils/help/citation
lib/R/library/utils/help/close.socket
lib/R/library/utils/help/combn
lib/R/library/utils/help/compareVersion
+lib/R/library/utils/help/count.fields
lib/R/library/utils/help/data
lib/R/library/utils/help/dataentry
lib/R/library/utils/help/debugger
@@ -8196,8 +8346,10 @@ lib/R/library/utils/help/edit
lib/R/library/utils/help/edit.data.frame
lib/R/library/utils/help/example
lib/R/library/utils/help/file.edit
+lib/R/library/utils/help/filetest
lib/R/library/utils/help/fix
lib/R/library/utils/help/flush.console
+lib/R/library/utils/help/format
lib/R/library/utils/help/getAnywhere
lib/R/library/utils/help/getFromNamespace
lib/R/library/utils/help/getS3method
@@ -8232,23 +8384,30 @@ lib/R/library/utils/help/read.DIF
lib/R/library/utils/help/read.fortran
lib/R/library/utils/help/read.fwf
lib/R/library/utils/help/read.socket
+lib/R/library/utils/help/read.table
lib/R/library/utils/help/readNEWS
lib/R/library/utils/help/recover
+lib/R/library/utils/help/relist
lib/R/library/utils/help/remove.packages
+lib/R/library/utils/help/roman
lib/R/library/utils/help/savehistory
lib/R/library/utils/help/select.list
lib/R/library/utils/help/sessionInfo
lib/R/library/utils/help/setRepositories
+lib/R/library/utils/help/stack
lib/R/library/utils/help/str
lib/R/library/utils/help/summaryRprof
lib/R/library/utils/help/toLatex
-lib/R/library/utils/help/tracemem
+lib/R/library/utils/help/type.convert
lib/R/library/utils/help/update.packages
lib/R/library/utils/help/url.show
lib/R/library/utils/help/utils-defunct
lib/R/library/utils/help/utils-deprecated
lib/R/library/utils/help/utils-package
lib/R/library/utils/help/vignette
+lib/R/library/utils/help/withVisible
+lib/R/library/utils/help/write.table
+lib/R/library/utils/help/zip.file.extract
lib/R/library/utils/html/00Index.html
lib/R/library/utils/html/BATCH.html
lib/R/library/utils/html/COMPILE.html
@@ -8257,9 +8416,11 @@ lib/R/library/utils/html/LINK.html
lib/R/library/utils/html/PkgUtils.html
lib/R/library/utils/html/REMOVE.html
lib/R/library/utils/html/RHOME.html
+lib/R/library/utils/html/RShowDoc.html
lib/R/library/utils/html/RSiteSearch.html
lib/R/library/utils/html/Rprof.html
lib/R/library/utils/html/Rprofmem.html
+lib/R/library/utils/html/Rscript.html
lib/R/library/utils/html/Rtangle.html
lib/R/library/utils/html/RweaveLatex.html
lib/R/library/utils/html/SHLIB.html
@@ -8267,6 +8428,7 @@ lib/R/library/utils/html/Sweave.html
lib/R/library/utils/html/SweaveSyntConv.html
lib/R/library/utils/html/SweaveUtils.html
lib/R/library/utils/html/URLencode.html
+lib/R/library/utils/html/View.html
lib/R/library/utils/html/alarm.html
lib/R/library/utils/html/apropos.html
lib/R/library/utils/html/browseEnv.html
@@ -8279,6 +8441,7 @@ lib/R/library/utils/html/citation.html
lib/R/library/utils/html/close.socket.html
lib/R/library/utils/html/combn.html
lib/R/library/utils/html/compareVersion.html
+lib/R/library/utils/html/count.fields.html
lib/R/library/utils/html/data.html
lib/R/library/utils/html/dataentry.html
lib/R/library/utils/html/debugger.html
@@ -8288,8 +8451,10 @@ lib/R/library/utils/html/edit.data.frame.html
lib/R/library/utils/html/edit.html
lib/R/library/utils/html/example.html
lib/R/library/utils/html/file.edit.html
+lib/R/library/utils/html/filetest.html
lib/R/library/utils/html/fix.html
lib/R/library/utils/html/flush.console.html
+lib/R/library/utils/html/format.html
lib/R/library/utils/html/getAnywhere.html
lib/R/library/utils/html/getFromNamespace.html
lib/R/library/utils/html/getS3method.html
@@ -8324,23 +8489,30 @@ lib/R/library/utils/html/read.DIF.html
lib/R/library/utils/html/read.fortran.html
lib/R/library/utils/html/read.fwf.html
lib/R/library/utils/html/read.socket.html
+lib/R/library/utils/html/read.table.html
lib/R/library/utils/html/readNEWS.html
lib/R/library/utils/html/recover.html
+lib/R/library/utils/html/relist.html
lib/R/library/utils/html/remove.packages.html
+lib/R/library/utils/html/roman.html
lib/R/library/utils/html/savehistory.html
lib/R/library/utils/html/select.list.html
lib/R/library/utils/html/sessionInfo.html
lib/R/library/utils/html/setRepositories.html
+lib/R/library/utils/html/stack.html
lib/R/library/utils/html/str.html
lib/R/library/utils/html/summaryRprof.html
lib/R/library/utils/html/toLatex.html
-lib/R/library/utils/html/tracemem.html
+lib/R/library/utils/html/type.convert.html
lib/R/library/utils/html/update.packages.html
lib/R/library/utils/html/url.show.html
lib/R/library/utils/html/utils-defunct.html
lib/R/library/utils/html/utils-deprecated.html
lib/R/library/utils/html/utils-package.html
lib/R/library/utils/html/vignette.html
+lib/R/library/utils/html/withVisible.html
+lib/R/library/utils/html/write.table.html
+lib/R/library/utils/html/zip.file.extract.html
lib/R/library/utils/iconvlist
lib/R/library/utils/latex/BATCH.tex
lib/R/library/utils/latex/COMPILE.tex
@@ -8349,9 +8521,11 @@ lib/R/library/utils/latex/LINK.tex
lib/R/library/utils/latex/PkgUtils.tex
lib/R/library/utils/latex/REMOVE.tex
lib/R/library/utils/latex/RHOME.tex
+lib/R/library/utils/latex/RShowDoc.tex
lib/R/library/utils/latex/RSiteSearch.tex
lib/R/library/utils/latex/Rprof.tex
lib/R/library/utils/latex/Rprofmem.tex
+lib/R/library/utils/latex/Rscript.tex
lib/R/library/utils/latex/Rtangle.tex
lib/R/library/utils/latex/RweaveLatex.tex
lib/R/library/utils/latex/SHLIB.tex
@@ -8359,6 +8533,7 @@ lib/R/library/utils/latex/Sweave.tex
lib/R/library/utils/latex/SweaveSyntConv.tex
lib/R/library/utils/latex/SweaveUtils.tex
lib/R/library/utils/latex/URLencode.tex
+lib/R/library/utils/latex/View.tex
lib/R/library/utils/latex/alarm.tex
lib/R/library/utils/latex/apropos.tex
lib/R/library/utils/latex/browseEnv.tex
@@ -8371,6 +8546,7 @@ lib/R/library/utils/latex/citation.tex
lib/R/library/utils/latex/close.socket.tex
lib/R/library/utils/latex/combn.tex
lib/R/library/utils/latex/compareVersion.tex
+lib/R/library/utils/latex/count.fields.tex
lib/R/library/utils/latex/data.tex
lib/R/library/utils/latex/dataentry.tex
lib/R/library/utils/latex/debugger.tex
@@ -8380,8 +8556,10 @@ lib/R/library/utils/latex/edit.data.frame.tex
lib/R/library/utils/latex/edit.tex
lib/R/library/utils/latex/example.tex
lib/R/library/utils/latex/file.edit.tex
+lib/R/library/utils/latex/filetest.tex
lib/R/library/utils/latex/fix.tex
lib/R/library/utils/latex/flush.console.tex
+lib/R/library/utils/latex/format.tex
lib/R/library/utils/latex/getAnywhere.tex
lib/R/library/utils/latex/getFromNamespace.tex
lib/R/library/utils/latex/getS3method.tex
@@ -8416,26 +8594,34 @@ lib/R/library/utils/latex/read.DIF.tex
lib/R/library/utils/latex/read.fortran.tex
lib/R/library/utils/latex/read.fwf.tex
lib/R/library/utils/latex/read.socket.tex
+lib/R/library/utils/latex/read.table.tex
lib/R/library/utils/latex/readNEWS.tex
lib/R/library/utils/latex/recover.tex
+lib/R/library/utils/latex/relist.tex
lib/R/library/utils/latex/remove.packages.tex
+lib/R/library/utils/latex/roman.tex
lib/R/library/utils/latex/savehistory.tex
lib/R/library/utils/latex/select.list.tex
lib/R/library/utils/latex/sessionInfo.tex
lib/R/library/utils/latex/setRepositories.tex
+lib/R/library/utils/latex/stack.tex
lib/R/library/utils/latex/str.tex
lib/R/library/utils/latex/summaryRprof.tex
lib/R/library/utils/latex/toLatex.tex
-lib/R/library/utils/latex/tracemem.tex
+lib/R/library/utils/latex/type.convert.tex
lib/R/library/utils/latex/update.packages.tex
lib/R/library/utils/latex/url.show.tex
lib/R/library/utils/latex/utils-defunct.tex
lib/R/library/utils/latex/utils-deprecated.tex
lib/R/library/utils/latex/utils-package.tex
lib/R/library/utils/latex/vignette.tex
+lib/R/library/utils/latex/withVisible.tex
+lib/R/library/utils/latex/write.table.tex
+lib/R/library/utils/latex/zip.file.extract.tex
lib/R/library/utils/man/utils.Rd.gz
lib/R/library/utils/po/en@quot/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo
+lib/R/library/utils/po/ja/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
@@ -8450,11 +8636,13 @@ lib/R/share/R/packloader.R
lib/R/share/encodings/Adobe-glyphlist
lib/R/share/encodings/character-sets
lib/R/share/java/getsp.class
-lib/R/share/licenses/Artistic
-lib/R/share/licenses/BSD
+lib/R/share/licenses/Artistic-1.0
+lib/R/share/licenses/Artistic-2.0
lib/R/share/licenses/GPL-2
+lib/R/share/licenses/GPL-3
lib/R/share/licenses/LGPL-2
lib/R/share/licenses/LGPL-2.1
+lib/R/share/licenses/LGPL-3
lib/R/share/locale/de/LC_MESSAGES/R.mo
lib/R/share/locale/en/LC_MESSAGES/R.mo
lib/R/share/locale/en@quot/LC_MESSAGES/R.mo
@@ -8473,6 +8661,7 @@ lib/R/share/make/config.mk
lib/R/share/make/shlib.mk
lib/R/share/make/tests.mk
lib/R/share/make/vars.mk
+lib/R/share/perl/File/Copy/Recursive.pm
lib/R/share/perl/R/Dcf.pm
lib/R/share/perl/R/Logfile.pm
lib/R/share/perl/R/Rd.pm
@@ -8497,11 +8686,15 @@ lib/R/share/texmf/omscmtt.fd
lib/R/share/texmf/ts1aer.fd
lib/R/share/texmf/ts1aett.fd
lib/R/share/texmf/upquote.sty
+lib/pkgconfig/libR.pc
man/man1/R.1
+man/man1/Rscript.1
@dirrm lib/R/share/texmf
@dirrm lib/R/share/sh
@dirrm lib/R/share/perl/Text
@dirrm lib/R/share/perl/R
+@dirrm lib/R/share/perl/File/Copy
+@dirrm lib/R/share/perl/File
@dirrm lib/R/share/perl
@dirrm lib/R/share/make
@dirrm lib/R/share/locale/zh_TW/LC_MESSAGES
@@ -8543,6 +8736,8 @@ man/man1/R.1
@dirrm lib/R/library/utils/po/ru
@dirrm lib/R/library/utils/po/ko/LC_MESSAGES
@dirrm lib/R/library/utils/po/ko
+@dirrm lib/R/library/utils/po/ja/LC_MESSAGES
+@dirrm lib/R/library/utils/po/ja
@dirrm lib/R/library/utils/po/fr/LC_MESSAGES
@dirrm lib/R/library/utils/po/fr
@dirrm lib/R/library/utils/po/en@quot/LC_MESSAGES
@@ -8557,6 +8752,8 @@ man/man1/R.1
@dirrm lib/R/library/utils/R
@dirrm lib/R/library/utils/Meta
@dirrm lib/R/library/utils
+@dirrm lib/R/library/tools/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/tools/po/zh_CN
@dirrm lib/R/library/tools/po/ru/LC_MESSAGES
@dirrm lib/R/library/tools/po/ru
@dirrm lib/R/library/tools/po/pt_BR/LC_MESSAGES
@@ -8581,6 +8778,8 @@ man/man1/R.1
@dirrm lib/R/library/tools/R
@dirrm lib/R/library/tools/Meta
@dirrm lib/R/library/tools
+@dirrm lib/R/library/tcltk/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/tcltk/po/zh_CN
@dirrm lib/R/library/tcltk/po/ru/LC_MESSAGES
@dirrm lib/R/library/tcltk/po/ru
@dirrm lib/R/library/tcltk/po/pt_BR/LC_MESSAGES
@@ -8617,6 +8816,8 @@ man/man1/R.1
@dirrm lib/R/library/survival/R
@dirrm lib/R/library/survival/Meta
@dirrm lib/R/library/survival
+@dirrm lib/R/library/stats4/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/stats4/po/zh_CN
@dirrm lib/R/library/stats4/po/ru/LC_MESSAGES
@dirrm lib/R/library/stats4/po/ru
@dirrm lib/R/library/stats4/po/pt_BR/LC_MESSAGES
@@ -8667,6 +8868,8 @@ man/man1/R.1
@dirrm lib/R/library/stats/R
@dirrm lib/R/library/stats/Meta
@dirrm lib/R/library/stats
+@dirrm lib/R/library/splines/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/splines/po/zh_CN
@dirrm lib/R/library/splines/po/ru/LC_MESSAGES
@dirrm lib/R/library/splines/po/ru
@dirrm lib/R/library/splines/po/pt_BR/LC_MESSAGES
@@ -8719,6 +8922,16 @@ man/man1/R.1
@dirrm lib/R/library/rpart/R
@dirrm lib/R/library/rpart/Meta
@dirrm lib/R/library/rpart
+@dirrm lib/R/library/rcompgen/man
+@dirrm lib/R/library/rcompgen/latex
+@dirrm lib/R/library/rcompgen/html
+@dirrm lib/R/library/rcompgen/help
+@dirrm lib/R/library/rcompgen/examples
+@exec ${MKDIR} %D/lib/R/library/rcompgen/R-ex
+@dirrm lib/R/library/rcompgen/R-ex
+@dirrm lib/R/library/rcompgen/R
+@dirrm lib/R/library/rcompgen/Meta
+@dirrm lib/R/library/rcompgen
@dirrm lib/R/library/nnet/po/fr/LC_MESSAGES
@dirrm lib/R/library/nnet/po/fr
@dirrm lib/R/library/nnet/po/en@quot/LC_MESSAGES
@@ -8761,10 +8974,14 @@ man/man1/R.1
@dirrm lib/R/library/mgcv
@dirrm lib/R/library/methods/po/zh_CN/LC_MESSAGES
@dirrm lib/R/library/methods/po/zh_CN
+@dirrm lib/R/library/methods/po/ru/LC_MESSAGES
+@dirrm lib/R/library/methods/po/ru
@dirrm lib/R/library/methods/po/pt_BR/LC_MESSAGES
@dirrm lib/R/library/methods/po/pt_BR
@dirrm lib/R/library/methods/po/ko/LC_MESSAGES
@dirrm lib/R/library/methods/po/ko
+@dirrm lib/R/library/methods/po/ja/LC_MESSAGES
+@dirrm lib/R/library/methods/po/ja
@dirrm lib/R/library/methods/po/fr/LC_MESSAGES
@dirrm lib/R/library/methods/po/fr
@dirrm lib/R/library/methods/po/en@quot/LC_MESSAGES
@@ -8790,6 +9007,8 @@ man/man1/R.1
@dirrm lib/R/library/lattice/R
@dirrm lib/R/library/lattice/Meta
@dirrm lib/R/library/lattice
+@dirrm lib/R/library/grid/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/grid/po/zh_CN
@dirrm lib/R/library/grid/po/ru/LC_MESSAGES
@dirrm lib/R/library/grid/po/ru
@dirrm lib/R/library/grid/po/pt_BR/LC_MESSAGES
@@ -8815,6 +9034,8 @@ man/man1/R.1
@dirrm lib/R/library/grid/R
@dirrm lib/R/library/grid/Meta
@dirrm lib/R/library/grid
+@dirrm lib/R/library/graphics/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/graphics/po/zh_CN
@dirrm lib/R/library/graphics/po/ru/LC_MESSAGES
@dirrm lib/R/library/graphics/po/ru
@dirrm lib/R/library/graphics/po/ko/LC_MESSAGES
@@ -8837,6 +9058,8 @@ man/man1/R.1
@dirrm lib/R/library/graphics/R
@dirrm lib/R/library/graphics/Meta
@dirrm lib/R/library/graphics
+@dirrm lib/R/library/grDevices/po/zh_CN/LC_MESSAGES
+@dirrm lib/R/library/grDevices/po/zh_CN
@dirrm lib/R/library/grDevices/po/ru/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/ru
@dirrm lib/R/library/grDevices/po/ko/LC_MESSAGES
@@ -8845,8 +9068,6 @@ man/man1/R.1
@dirrm lib/R/library/grDevices/po/ja
@dirrm lib/R/library/grDevices/po/it/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/it
-@dirrm lib/R/library/grDevices/po/grDevices-zh_CN/LC_MESSAGES
-@dirrm lib/R/library/grDevices/po/grDevices-zh_CN
@dirrm lib/R/library/grDevices/po/fr/LC_MESSAGES
@dirrm lib/R/library/grDevices/po/fr
@dirrm lib/R/library/grDevices/po/en_GB/LC_MESSAGES
@@ -8889,6 +9110,14 @@ man/man1/R.1
@dirrm lib/R/library/datasets/R
@dirrm lib/R/library/datasets/Meta
@dirrm lib/R/library/datasets
+@dirrm lib/R/library/codetools/man
+@dirrm lib/R/library/codetools/latex
+@dirrm lib/R/library/codetools/html
+@dirrm lib/R/library/codetools/help
+@dirrm lib/R/library/codetools/R-ex
+@dirrm lib/R/library/codetools/R
+@dirrm lib/R/library/codetools/Meta
+@dirrm lib/R/library/codetools
@dirrm lib/R/library/cluster/man
@dirrm lib/R/library/cluster/libs
@dirrm lib/R/library/cluster/latex
diff --git a/math/R/distinfo b/math/R/distinfo
index 74bf1acf50b..cadd101f944 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,9 +1,9 @@
-$NetBSD: distinfo,v 1.34 2007/03/20 11:00:58 markd Exp $
+$NetBSD: distinfo,v 1.35 2007/11/03 20:14:40 markd Exp $
-SHA1 (R-2.4.1.tar.gz) = 5ab0a29a29c35dc2cb06c875539e62b57503c762
-RMD160 (R-2.4.1.tar.gz) = 2a03cc81b870d594a695e9eb1e77720379c60194
-Size (R-2.4.1.tar.gz) = 14570344 bytes
-SHA1 (patch-aa) = 917482116fb288c46bee3b8fad8359bc87961bd3
+SHA1 (R-2.6.0.tar.gz) = ff51578fc630e65ce0e2bb92b0e1f8324c94925d
+RMD160 (R-2.6.0.tar.gz) = 54b3d183dfb15af7f861e7b62904998865ad194c
+Size (R-2.6.0.tar.gz) = 15447985 bytes
+SHA1 (patch-aa) = 50d7038e5933678646b0d48ea4f0d02959e6aebe
SHA1 (patch-ab) = b724b549cd9920865c4d4ae60c71dff48c4c0c06
-SHA1 (patch-ac) = c256a35ac50b908abd5484ddd4cc95f503f05b68
+SHA1 (patch-ac) = 4acc42574174a45e9ff8213fca2536ff4906bb80
SHA1 (patch-ad) = 666dccbc9741b90bc7af11e51ccf25240906da8b
diff --git a/math/R/patches/patch-aa b/math/R/patches/patch-aa
index 9845ad87bc3..2683b8c4724 100644
--- a/math/R/patches/patch-aa
+++ b/math/R/patches/patch-aa
@@ -1,8 +1,8 @@
-$NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $
+$NetBSD: patch-aa,v 1.18 2007/11/03 20:14:40 markd Exp $
---- configure.ac.orig 2006-12-04 10:37:52.000000000 +1300
+--- configure.ac.orig 2007-09-21 14:05:04.000000000 +1200
+++ configure.ac
-@@ -255,7 +255,7 @@ AC_ARG_ENABLE([BLAS-shlib],
+@@ -260,7 +260,7 @@ AC_ARG_ENABLE([BLAS-shlib],
[use_blas_shlib="unset"])
if test "${want_R_shlib}" = yes; then
@@ -11,7 +11,7 @@ $NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $
else
LIBR=
fi
-@@ -653,9 +653,9 @@ if test "${use_readline}" = yes; then
+@@ -672,9 +672,9 @@ if test "${use_readline}" = yes; then
if test "${use_readline}" = no; then
## only need ncurses if libreadline is not statically linked against it
unset ac_cv_lib_readline_rl_callback_read_char
@@ -24,7 +24,7 @@ $NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $
AC_CHECK_LIB(readline, rl_callback_read_char)
use_readline="${ac_cv_lib_readline_rl_callback_read_char}"
fi
-@@ -798,13 +798,6 @@ case "${host_cpu}" in
+@@ -817,13 +817,6 @@ case "${host_cpu}" in
R_PROG_CC_FLAG([-ieee_with_inexact],
R_SH_VAR_ADD(R_XTRA_CFLAGS, [-ieee_with_inexact]))
fi
@@ -38,8 +38,8 @@ $NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $
if test "${GXX}" = yes; then
R_PROG_CXX_FLAG([-mieee],
R_SH_VAR_ADD(R_XTRA_CXXFLAGS, [-mieee]))
-@@ -1327,6 +1320,7 @@ rm -f libconftest${DYLIB_EXT} conftest.c
- fpicflags=
+@@ -1380,6 +1373,7 @@ rm -f libconftest${DYLIB_EXT} conftest.c
+ fcpicflags=
;;
netbsd*)
+ fpicflags="-fPIC"
diff --git a/math/R/patches/patch-ac b/math/R/patches/patch-ac
index 01a2fd34ab7..3456002e022 100644
--- a/math/R/patches/patch-ac
+++ b/math/R/patches/patch-ac
@@ -1,9 +1,9 @@
-$NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
+$NetBSD: patch-ac,v 1.20 2007/11/03 20:14:40 markd Exp $
---- configure.orig 2006-12-07 00:16:29.000000000 +1300
+--- configure.orig 2007-09-26 14:06:08.000000000 +1200
+++ configure
-@@ -2085,7 +2085,7 @@ else
- fi;
+@@ -2659,7 +2659,7 @@ fi
+
if test "${want_R_shlib}" = yes; then
- LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR"
@@ -11,7 +11,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
else
LIBR=
fi
-@@ -6799,7 +6799,7 @@ darwin* | rhapsody*)
+@@ -8432,7 +8432,7 @@ darwin* | rhapsody*)
lt_cv_deplibs_check_method=pass_all
;;
@@ -20,7 +20,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
if echo __ELF__ | $CC -E - | grep __ELF__ > /dev/null; then
case $host_cpu in
i*86 )
-@@ -9324,7 +9324,7 @@ if test -z "$aix_libpath"; then aix_libp
+@@ -11104,7 +11104,7 @@ if test -z "$aix_libpath"; then aix_libp
;;
# FreeBSD 3 and greater uses gcc -shared to do shared libraries.
@@ -29,7 +29,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
archive_cmds='$CC -shared -o $lib $libobjs $deplibs $compiler_flags'
hardcode_libdir_flag_spec='-R$libdir'
hardcode_direct=yes
-@@ -9902,7 +9902,7 @@ kfreebsd*-gnu)
+@@ -11682,7 +11682,7 @@ kfreebsd*-gnu)
dynamic_linker='GNU ld.so'
;;
@@ -38,7 +38,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout`
version_type=freebsd-$objformat
case $version_type in
-@@ -12283,7 +12283,7 @@ if test -z "$aix_libpath"; then aix_libp
+@@ -14170,7 +14170,7 @@ if test -z "$aix_libpath"; then aix_libp
freebsd-elf*)
archive_cmds_need_lc_CXX=no
;;
@@ -47,7 +47,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
# FreeBSD 3 and later use GNU C++ and GNU ld with standard ELF
# conventions
ld_shlibs_CXX=yes
-@@ -12994,7 +12994,7 @@ echo $ECHO_N "checking for $compiler opt
+@@ -14881,7 +14881,7 @@ echo $ECHO_N "checking for $compiler opt
;;
esac
;;
@@ -56,7 +56,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
# FreeBSD uses GNU C++
;;
hpux9* | hpux10* | hpux11*)
-@@ -13605,7 +13605,7 @@ kfreebsd*-gnu)
+@@ -15492,7 +15492,7 @@ kfreebsd*-gnu)
dynamic_linker='GNU ld.so'
;;
@@ -65,7 +65,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout`
version_type=freebsd-$objformat
case $version_type in
-@@ -16176,7 +16176,7 @@ if test -z "$aix_libpath"; then aix_libp
+@@ -18170,7 +18170,7 @@ if test -z "$aix_libpath"; then aix_libp
;;
# FreeBSD 3 and greater uses gcc -shared to do shared libraries.
@@ -74,7 +74,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
archive_cmds_F77='$CC -shared -o $lib $libobjs $deplibs $compiler_flags'
hardcode_libdir_flag_spec_F77='-R$libdir'
hardcode_direct_F77=yes
-@@ -16754,7 +16754,7 @@ kfreebsd*-gnu)
+@@ -18748,7 +18748,7 @@ kfreebsd*-gnu)
dynamic_linker='GNU ld.so'
;;
@@ -83,7 +83,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout`
version_type=freebsd-$objformat
case $version_type in
-@@ -18527,7 +18527,7 @@ if test -z "$aix_libpath"; then aix_libp
+@@ -20548,7 +20548,7 @@ if test -z "$aix_libpath"; then aix_libp
;;
# FreeBSD 3 and greater uses gcc -shared to do shared libraries.
@@ -92,7 +92,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
archive_cmds_GCJ='$CC -shared -o $lib $libobjs $deplibs $compiler_flags'
hardcode_libdir_flag_spec_GCJ='-R$libdir'
hardcode_direct_GCJ=yes
-@@ -19105,7 +19105,7 @@ kfreebsd*-gnu)
+@@ -21126,7 +21126,7 @@ kfreebsd*-gnu)
dynamic_linker='GNU ld.so'
;;
@@ -101,16 +101,16 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout`
version_type=freebsd-$objformat
case $version_type in
-@@ -22139,13 +22139,13 @@ fi
+@@ -24329,13 +24329,13 @@ fi
## only need ncurses if libreadline is not statically linked against it
unset ac_cv_lib_readline_rl_callback_read_char
--echo "$as_me:$LINENO: checking for main in -lncurses" >&5
--echo $ECHO_N "checking for main in -lncurses... $ECHO_C" >&6
+-{ echo "$as_me:$LINENO: checking for main in -lncurses" >&5
+-echo $ECHO_N "checking for main in -lncurses... $ECHO_C" >&6; }
-if test "${ac_cv_lib_ncurses_main+set}" = set; then
-+echo "$as_me:$LINENO: checking for main in -ltermcap" >&5
-+echo $ECHO_N "checking for main in -ltermcap... $ECHO_C" >&6
-+if test "${ac_cv_lib_termcap+set}" = set; then
++{ echo "$as_me:$LINENO: checking for main in -ltermcap" >&5
++echo $ECHO_N "checking for main in -ltermcap... $ECHO_C" >&6; }
++if test "${ac_cv_lib_termcap_main+set}" = set; then
echo $ECHO_N "(cached) $ECHO_C" >&6
else
ac_check_lib_save_LIBS=$LIBS
@@ -119,7 +119,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -22184,35 +22184,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l
+@@ -24386,36 +24386,36 @@ eval "echo \"\$as_me:$LINENO: $ac_try_ec
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; }; then
@@ -129,18 +129,19 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
--ac_cv_lib_ncurses_main=no
-+ac_cv_lib_termcap_main=no
+- ac_cv_lib_ncurses_main=no
++ ac_cv_lib_termcap_main=no
fi
- rm -f conftest.err conftest.$ac_objext \
+
+ rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_ncurses_main" >&5
--echo "${ECHO_T}$ac_cv_lib_ncurses_main" >&6
+-{ echo "$as_me:$LINENO: result: $ac_cv_lib_ncurses_main" >&5
+-echo "${ECHO_T}$ac_cv_lib_ncurses_main" >&6; }
-if test $ac_cv_lib_ncurses_main = yes; then
-+echo "$as_me:$LINENO: result: $ac_cv_lib_termcap_main" >&5
-+echo "${ECHO_T}$ac_cv_lib_termcap_main" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_termcap_main" >&5
++echo "${ECHO_T}$ac_cv_lib_termcap_main" >&6; }
+if test $ac_cv_lib_termcap_main = yes; then
cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBNCURSES 1
@@ -152,11 +153,11 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
else
--echo "$as_me:$LINENO: checking for main in -ltermcap" >&5
--echo $ECHO_N "checking for main in -ltermcap... $ECHO_C" >&6
+-{ echo "$as_me:$LINENO: checking for main in -ltermcap" >&5
+-echo $ECHO_N "checking for main in -ltermcap... $ECHO_C" >&6; }
-if test "${ac_cv_lib_termcap_main+set}" = set; then
-+echo "$as_me:$LINENO: checking for main in -ltermlib" >&5
-+echo $ECHO_N "checking for main in -ltermlib... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for main in -ltermlib" >&5
++echo $ECHO_N "checking for main in -ltermlib... $ECHO_C" >&6; }
+if test "${ac_cv_lib_termlib_main+set}" = set; then
echo $ECHO_N "(cached) $ECHO_C" >&6
else
@@ -166,7 +167,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -22251,35 +22251,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l
+@@ -24466,36 +24466,36 @@ eval "echo \"\$as_me:$LINENO: $ac_try_ec
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; }; then
@@ -176,18 +177,19 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
--ac_cv_lib_termcap_main=no
-+ac_cv_lib_termlib_main=no
+- ac_cv_lib_termcap_main=no
++ ac_cv_lib_termlib_main=no
fi
- rm -f conftest.err conftest.$ac_objext \
+
+ rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_termcap_main" >&5
--echo "${ECHO_T}$ac_cv_lib_termcap_main" >&6
+-{ echo "$as_me:$LINENO: result: $ac_cv_lib_termcap_main" >&5
+-echo "${ECHO_T}$ac_cv_lib_termcap_main" >&6; }
-if test $ac_cv_lib_termcap_main = yes; then
-+echo "$as_me:$LINENO: result: $ac_cv_lib_termlib_main" >&5
-+echo "${ECHO_T}$ac_cv_lib_termlib_main" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_termlib_main" >&5
++echo "${ECHO_T}$ac_cv_lib_termlib_main" >&6; }
+if test $ac_cv_lib_termlib_main = yes; then
cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBTERMCAP 1
@@ -199,11 +201,11 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
else
--echo "$as_me:$LINENO: checking for main in -ltermlib" >&5
--echo $ECHO_N "checking for main in -ltermlib... $ECHO_C" >&6
+-{ echo "$as_me:$LINENO: checking for main in -ltermlib" >&5
+-echo $ECHO_N "checking for main in -ltermlib... $ECHO_C" >&6; }
-if test "${ac_cv_lib_termlib_main+set}" = set; then
-+echo "$as_me:$LINENO: checking for main in -lncurses" >&5
-+echo $ECHO_N "checking for main in -lncurses... $ECHO_C" >&6
++{ echo "$as_me:$LINENO: checking for main in -lncurses" >&5
++echo $ECHO_N "checking for main in -lncurses... $ECHO_C" >&6; }
+if test "${ac_cv_lib_ncurses_main+set}" = set; then
echo $ECHO_N "(cached) $ECHO_C" >&6
else
@@ -213,7 +215,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -22318,25 +22318,25 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l
+@@ -24546,26 +24546,26 @@ eval "echo \"\$as_me:$LINENO: $ac_try_ec
ac_status=$?
echo "$as_me:$LINENO: \$? = $ac_status" >&5
(exit $ac_status); }; }; then
@@ -223,18 +225,19 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
echo "$as_me: failed program was:" >&5
sed 's/^/| /' conftest.$ac_ext >&5
--ac_cv_lib_termlib_main=no
-+ac_cv_lib_ncurses_main=no
+- ac_cv_lib_termlib_main=no
++ ac_cv_lib_ncurses_main=no
fi
- rm -f conftest.err conftest.$ac_objext \
+
+ rm -f core conftest.err conftest.$ac_objext \
conftest$ac_exeext conftest.$ac_ext
LIBS=$ac_check_lib_save_LIBS
fi
--echo "$as_me:$LINENO: result: $ac_cv_lib_termlib_main" >&5
--echo "${ECHO_T}$ac_cv_lib_termlib_main" >&6
+-{ echo "$as_me:$LINENO: result: $ac_cv_lib_termlib_main" >&5
+-echo "${ECHO_T}$ac_cv_lib_termlib_main" >&6; }
-if test $ac_cv_lib_termlib_main = yes; then
-+echo "$as_me:$LINENO: result: $ac_cv_lib_ncurses_main" >&5
-+echo "${ECHO_T}$ac_cv_lib_ncurses_main" >&6
++{ echo "$as_me:$LINENO: result: $ac_cv_lib_ncurses_main" >&5
++echo "${ECHO_T}$ac_cv_lib_ncurses_main" >&6; }
+if test $ac_cv_lib_ncurses_main = yes; then
cat >>confdefs.h <<_ACEOF
-#define HAVE_LIBTERMLIB 1
@@ -246,7 +249,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
fi
-@@ -27973,6 +27973,7 @@ cat > conftest.c <<EOF
+@@ -32398,6 +32398,7 @@ cat > conftest.c <<EOF
#else
# define F77_SYMBOL(x) x
#endif
@@ -254,7 +257,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
int main () {
exit(0);
}
-@@ -28043,6 +28044,9 @@ cat > conftest.c <<EOF
+@@ -32475,6 +32476,9 @@ cat > conftest.c <<EOF
extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y);
@@ -264,7 +267,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
int main () {
int a[3] = {17, 237, 2000000000}, b[2], res = 0;
double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3];
-@@ -28133,6 +28137,9 @@ typedef struct {
+@@ -32572,6 +32576,9 @@ typedef struct {
extern void F77_SYMBOL(cftest)(Rcomplex *x);
@@ -274,15 +277,15 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
int main () {
Rcomplex z[3];
-@@ -28528,157 +28535,6 @@ echo "${ECHO_T}no" >&6
+@@ -33739,183 +33746,6 @@ echo "${ECHO_T}no" >&6; }
fi
fi
- if test "${G77}" = yes; then
- ac_safe=_mieee
--echo "$as_me:$LINENO: checking whether ${F77} accepts -mieee" >&5
--echo $ECHO_N "checking whether ${F77} accepts -mieee... $ECHO_C" >&6
--if eval "test \"\${r_cv_prog_f77_flag_${ac_safe}+set}\" = set"; then
+-{ echo "$as_me:$LINENO: checking whether ${F77} accepts -mieee" >&5
+-echo $ECHO_N "checking whether ${F77} accepts -mieee... $ECHO_C" >&6; }
+-if { as_var=r_cv_prog_f77_flag_${ac_safe}; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
- ac_ext=f
@@ -298,24 +301,36 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- end
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
+-if { (ac_try="$ac_link"
+-case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_f77_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
+- { ac_try='test -z "$ac_f77_werror_flag" || test ! -s conftest.err'
+- { (case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
+- { (case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
@@ -324,9 +339,10 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
--eval "r_cv_prog_f77_flag_${ac_safe}=no"
+- eval "r_cv_prog_f77_flag_${ac_safe}=no"
-fi
--rm -f conftest.err conftest.$ac_objext \
+-
+-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-FFLAGS="${r_save_FFLAGS}"
-ac_ext=c
@@ -339,8 +355,8 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
-fi
-
-if eval "test \"`echo '$r_cv_prog_f77_flag_'$ac_safe`\" = yes"; then
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
+- { echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6; }
- separator=""
-test -z "${separator}" && separator=" "
-if test -z "${R_XTRA_FFLAGS}"; then
@@ -349,15 +365,15 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- R_XTRA_FFLAGS="${R_XTRA_FFLAGS}${separator}-mieee"
-fi
-else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
+- { echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6; }
-fi
-
- else
- ac_safe=_fpe3
--echo "$as_me:$LINENO: checking whether ${F77} accepts -fpe3" >&5
--echo $ECHO_N "checking whether ${F77} accepts -fpe3... $ECHO_C" >&6
--if eval "test \"\${r_cv_prog_f77_flag_${ac_safe}+set}\" = set"; then
+-{ echo "$as_me:$LINENO: checking whether ${F77} accepts -fpe3" >&5
+-echo $ECHO_N "checking whether ${F77} accepts -fpe3... $ECHO_C" >&6; }
+-if { as_var=r_cv_prog_f77_flag_${ac_safe}; eval "test \"\${$as_var+set}\" = set"; }; then
- echo $ECHO_N "(cached) $ECHO_C" >&6
-else
- ac_ext=f
@@ -373,24 +389,36 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- end
-_ACEOF
-rm -f conftest.$ac_objext conftest$ac_exeext
--if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
-- (eval $ac_link) 2>conftest.er1
+-if { (ac_try="$ac_link"
+-case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_link") 2>conftest.er1
- ac_status=$?
- grep -v '^ *+' conftest.er1 >conftest.err
- rm -f conftest.er1
- cat conftest.err >&5
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); } &&
-- { ac_try='test -z "$ac_f77_werror_flag"
-- || test ! -s conftest.err'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
+- { ac_try='test -z "$ac_f77_werror_flag" || test ! -s conftest.err'
+- { (case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; } &&
- { ac_try='test -s conftest$ac_exeext'
-- { (eval echo "$as_me:$LINENO: \"$ac_try\"") >&5
-- (eval $ac_try) 2>&5
+- { (case "(($ac_try" in
+- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+- *) ac_try_echo=$ac_try;;
+-esac
+-eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+- (eval "$ac_try") 2>&5
- ac_status=$?
- echo "$as_me:$LINENO: \$? = $ac_status" >&5
- (exit $ac_status); }; }; then
@@ -399,9 +427,10 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- echo "$as_me: failed program was:" >&5
-sed 's/^/| /' conftest.$ac_ext >&5
-
--eval "r_cv_prog_f77_flag_${ac_safe}=no"
+- eval "r_cv_prog_f77_flag_${ac_safe}=no"
-fi
--rm -f conftest.err conftest.$ac_objext \
+-
+-rm -f core conftest.err conftest.$ac_objext \
- conftest$ac_exeext conftest.$ac_ext
-FFLAGS="${r_save_FFLAGS}"
-ac_ext=c
@@ -414,8 +443,8 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
-fi
-
-if eval "test \"`echo '$r_cv_prog_f77_flag_'$ac_safe`\" = yes"; then
-- echo "$as_me:$LINENO: result: yes" >&5
--echo "${ECHO_T}yes" >&6
+- { echo "$as_me:$LINENO: result: yes" >&5
+-echo "${ECHO_T}yes" >&6; }
- separator=""
-test -z "${separator}" && separator=" "
-if test -z "${R_XTRA_FFLAGS}"; then
@@ -424,15 +453,15 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
- R_XTRA_FFLAGS="${R_XTRA_FFLAGS}${separator}-fpe3"
-fi
-else
-- echo "$as_me:$LINENO: result: no" >&5
--echo "${ECHO_T}no" >&6
+- { echo "$as_me:$LINENO: result: no" >&5
+-echo "${ECHO_T}no" >&6; }
-fi
-
- fi
if test "${GXX}" = yes; then
ac_safe=_mieee
- echo "$as_me:$LINENO: checking whether ${CXX-c++} accepts -mieee" >&5
-@@ -29013,7 +28869,7 @@ _ACEOF
+ { echo "$as_me:$LINENO: checking whether ${CXX-c++} accepts -mieee" >&5
+@@ -34380,7 +34210,7 @@ _ACEOF
if test "${GCC}" = yes; then
## only Apple build of gcc supports (and needs?) -no-cpp-precomp
${CC} --version|grep Apple >/dev/null 2>/dev/null
@@ -441,7 +470,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
separator=""
test -z "${separator}" && separator=" "
if test -z "${R_XTRA_CPPFLAGS}"; then
-@@ -30053,7 +29909,7 @@ echo "$as_me: WARNING: Use of flat names
+@@ -35551,7 +35381,7 @@ echo "$as_me: WARNING: Use of flat names
SHLIB_LIBADD="-lcc_dynamic"
fi
;;
@@ -450,24 +479,24 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
## Only sure for FreeBSD 3 and above.
main_ldflags="-export-dynamic"
shlib_ldflags="-shared"
-@@ -30141,6 +29997,7 @@ echo "$as_me: WARNING: Use of flat names
- fpicflags=
+@@ -35640,6 +35470,7 @@ echo "$as_me: WARNING: Use of flat names
+ fcpicflags=
;;
netbsd*)
+ fpicflags="-fPIC"
if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then
main_ldflags="-export-dynamic"
shlib_ldflags="-shared"
-@@ -30240,7 +30097,7 @@ fi
+@@ -35739,7 +35570,7 @@ fi
: ${FPICFLAGS="${fpicflags}"}
if test -z "${FPICFLAGS}"; then
case "${host_os}" in
-- aix*|irix*|mingw*|osf*)
-+ aix*|irix*|mingw*|osf*|darwin*)
+- aix*|cygwin*|irix*|mingw*|osf*)
++ aix*|cygwin*|irix*|mingw*|osf*|darwin*)
;;
*)
{ echo "$as_me:$LINENO: WARNING: I could not determine FPICFLAGS." >&5
-@@ -36377,6 +36234,15 @@ cat > conftest.c <<EOF
+@@ -42894,6 +42725,15 @@ cat > conftest.c <<EOF
#endif
extern void F77_SYMBOL(test1)(int *iflag);
@@ -483,7 +512,7 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
int main () {
int iflag;
F77_SYMBOL(test1)(&iflag);
-@@ -36441,6 +36307,14 @@ else
+@@ -42958,6 +42798,14 @@ else
#else
# define F77_SYMBOL(x) x
#endif
@@ -498,12 +527,3 @@ $NetBSD: patch-ac,v 1.19 2007/03/20 11:00:58 markd Exp $
void F77_SYMBOL(xerbla)(char *srname, int *info)
{}
void blas_set () {
-@@ -39649,7 +39523,7 @@ cat >>confdefs.h <<\_ACEOF
- _ACEOF
-
- r_save_LIBS=${LIBS}
-- if test "$want_utf8_support" == yes ; then
-+ if test "$want_utf8_support" = yes ; then
- LIBS="${LIBS} ${X_LIBS}"
-
-
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-12 09:24:00 +0000