diff options
| author | markd <markd@pkgsrc.org> | 2007-03-14 11:50:17 +0000 |
|---|---|---|
| committer | markd <markd@pkgsrc.org> | 2007-03-14 11:50:17 +0000 |
| commit | 026fef74287eca44cb4a564403613bc006ed2f28 (patch) | |
| tree | 314e0033e2eddc015c1c7645312626cdb0f2746f /math/R | |
| parent | a9a5afbacd83f08493f519406bf8055961a4c512 (diff) | |
| download | pkgsrc-026fef74287eca44cb4a564403613bc006ed2f28.tar.gz | |
Update R to version 2.4.1.
pkgsrc changes: no longer automatically generate the PLIST.
use (de)install templates for handling updating the index files
when adding/removing R packages.
Changes 2.4.1
This is a maintenance release and fixes a number of mostly minor bugs.
Changes 2.4.0
This release has many new features. One important aspect is that S4
classes now have their own internal type, and S4 method dispatch has
been completely revised to using cached generic functions, giving
substantial performance improvements. As a consequence, all packages
depending on "methods" need to be reinstalled.
Diffstat (limited to 'math/R')
| -rw-r--r-- | math/R/Makefile | 37 | ||||
| -rw-r--r-- | math/R/Makefile.extension | 12 | ||||
| -rw-r--r-- | math/R/PLIST | 8994 | ||||
| -rw-r--r-- | math/R/distinfo | 14 | ||||
| -rw-r--r-- | math/R/files/pkg-index.tmpl | 25 | ||||
| -rw-r--r-- | math/R/patches/patch-aa | 16 | ||||
| -rw-r--r-- | math/R/patches/patch-ac | 54 | ||||
| -rw-r--r-- | math/R/patches/patch-ad | 10 |
8 files changed, 9078 insertions, 84 deletions
diff --git a/math/R/Makefile b/math/R/Makefile index 6aeac1d909c..fd3a0a4ab61 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -1,6 +1,6 @@ -# $NetBSD: Makefile,v 1.87 2007/01/08 15:00:36 joerg Exp $ +# $NetBSD: Makefile,v 1.88 2007/03/14 11:50:17 markd Exp $ -DISTNAME= R-2.3.1 +DISTNAME= R-2.4.1 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-2/} @@ -73,10 +73,6 @@ CONFIGURE_ENV+= R_PAPERSIZE=${R_PAPERSIZE:Q} INSTALL_DATA= ${INSTALL} ${COPY} -m ${SHAREMODE} INSTALL_SCRIPT= ${INSTALL} ${COPY} -m ${BINMODE} -PLIST_SRC= ${WRKDIR}/.PLIST_SRC -R_LIBDIR= lib/R -R_INSTALL_DIRS= ${R_LIBDIR} - BUILDLINK_API_DEPENDS.zlib+= zlib>=1.2.1 .if ${OPSYS} == "NetBSD" && !empty(OS_VERSION:M1.[0-6]*) @@ -95,29 +91,12 @@ CONFIGURE_ARGS+= --enable-mbcs=no .include "../../x11/libXt/buildlink3.mk" .include "../../x11/tk/buildlink3.mk" -# Generate the PLIST dynamically as it changes in each version only in a -# specific subtree. This will make maintaining this package a little easier -# when updating. -# +INSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl +DEINSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl +PRINT_PLIST_AWK+= /^lib\/R\/doc\/html\/packages.html$$/ { next; } +PRINT_PLIST_AWK+= /^lib\/R\/doc\/html\/search\/index.txt$$/ { next; } + post-install: - ${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/${R_LIBDIR} - ${RM} -f ${PLIST_SRC} - ${CAT} ${PKGDIR}/PLIST > ${PLIST_SRC} - ( cd ${PREFIX}; \ - for dir in ${R_INSTALL_DIRS}; do \ - ${FIND} $${dir} \( -type f -o -type l \) -print; \ - done; \ - ) | ${GREP} -v "lib/R/doc/html/packages.html" | \ - ${GREP} -v "lib/R/doc/html/search/index.txt" | \ - ${SORT} -u >> ${PLIST_SRC} - ${ECHO} "@unexec "${RM:Q}" -f %D/lib/R/doc/html/packages.html" >> ${PLIST_SRC} - ${ECHO} "@unexec "${RM:Q}" -f %D/lib/R/doc/html/search/index.txt" >> ${PLIST_SRC} - ( cd ${PREFIX} && \ - for dir in ${R_INSTALL_DIRS}; do \ - ${FIND} $${dir} -type d -print; \ - done; \ - ) | ${SORT} -ur | ${SED} -e "s|^|@dirrm |" >> ${PLIST_SRC} - ${ECHO} "@exec R CMD "${PERL5:Q}" %D/lib/R/share/perl/build-help.pl --htmllists 2>/dev/null" >> ${PLIST_SRC} - ${ECHO} "@exec "${CAT:Q}" %D/lib/R/library/*/CONTENTS > %D/lib/R/doc/html/search/index.txt 2>/dev/null" >> ${PLIST_SRC} + ${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/lib/R .include "../../mk/bsd.pkg.mk" diff --git a/math/R/Makefile.extension b/math/R/Makefile.extension index affa26eb823..80aed1bc4af 100644 --- a/math/R/Makefile.extension +++ b/math/R/Makefile.extension @@ -1,4 +1,4 @@ -# $NetBSD: Makefile.extension,v 1.10 2007/02/22 19:26:45 wiz Exp $ +# $NetBSD: Makefile.extension,v 1.11 2007/03/14 11:50:33 markd Exp $ # # This Makefile fragment is included by packages for R library packages. # @@ -31,14 +31,12 @@ R_PACKLIST_FILES_CMD= ( cd ${PREFIX}; for dir in ${R_INST_DIRS}; do \ ${FIND} ${R_LIB}/$${dir} \( -type f -o -type l \) -print; done ) | ${SORT} -u R_PACKLIST_DIRS_CMD= ( cd ${PREFIX}; for dir in ${R_INST_DIRS}; do \ ${FIND} ${R_LIB}/$${dir} -type d -print; done ) | ${SORT} -ur | ${SED} -e "s|^|@dirrm |" -R_PACKLIST_CMDS_CMD= ( ${ECHO} '@exec R CMD '${PERL5:Q}' %D/lib/R/share/perl/build-help.pl --htmllists 2>/dev/null'; \ - ${ECHO} '@exec '${CAT:Q}' %D/lib/R/library/*/CONTENTS > %D/lib/R/doc/html/search/index.txt 2>/dev/null'; \ - ${ECHO} '@unexec R CMD '${PERL5:Q}' %D/lib/R/share/perl/build-help.pl --htmllists 2>/dev/null'; \ - ${ECHO} '@unexec '${CAT:Q}' %D/lib/R/library/*/CONTENTS > %D/lib/R/doc/html/search/index.txt 2>/dev/null' ) R_GENERATE_PLIST= ${R_PACKLIST_FILES_CMD}; \ - ${R_PACKLIST_DIRS_CMD}; \ - ${R_PACKLIST_CMDS_CMD}; + ${R_PACKLIST_DIRS_CMD}; GENERATE_PLIST+= ${R_GENERATE_PLIST} +INSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl +DEINSTALL_TEMPLATES+= ../../math/R/files/pkg-index.tmpl + .include "../../math/R/buildlink3.mk" diff --git a/math/R/PLIST b/math/R/PLIST index a232cfbbe04..7152652c3ea 100644 --- a/math/R/PLIST +++ b/math/R/PLIST @@ -1,3 +1,8995 @@ -@comment $NetBSD: PLIST,v 1.1 2001/11/01 00:12:00 zuntum Exp $ +@comment $NetBSD: PLIST,v 1.2 2007/03/14 11:50:33 markd Exp $ bin/R +lib/R/COPYING +lib/R/NEWS +lib/R/SVN-REVISION +lib/R/bin/BATCH +lib/R/bin/COMPILE +lib/R/bin/INSTALL +lib/R/bin/LINK +lib/R/bin/R +lib/R/bin/REMOVE +lib/R/bin/Rcmd +lib/R/bin/Rd2dvi +lib/R/bin/Rd2txt +lib/R/bin/Rdconv +lib/R/bin/Rdiff +lib/R/bin/Rprof +lib/R/bin/SHLIB +lib/R/bin/Sd2Rd +lib/R/bin/Stangle +lib/R/bin/Sweave +lib/R/bin/build +lib/R/bin/check +lib/R/bin/config +lib/R/bin/exec/R +lib/R/bin/f77_f2c +lib/R/bin/javareconf +lib/R/bin/libtool +lib/R/bin/mkinstalldirs +lib/R/bin/pager +lib/R/bin/texi2dvi +lib/R/doc/AUTHORS +lib/R/doc/COPYING +lib/R/doc/COPYING.LIB +lib/R/doc/COPYRIGHTS +lib/R/doc/CRAN_mirrors.csv +lib/R/doc/FAQ +lib/R/doc/KEYWORDS +lib/R/doc/KEYWORDS.db +lib/R/doc/NEWS +lib/R/doc/RESOURCES +lib/R/doc/THANKS +lib/R/doc/html/R.css +lib/R/doc/html/about.html +lib/R/doc/html/index.html +lib/R/doc/html/left.jpg +lib/R/doc/html/logo.jpg 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lib/R/library/base/po/fr +@dirrm lib/R/library/base/po/en@quot/LC_MESSAGES +@dirrm lib/R/library/base/po/en@quot +@dirrm lib/R/library/base/po/de/LC_MESSAGES +@dirrm lib/R/library/base/po/de +@dirrm lib/R/library/base/po +@dirrm lib/R/library/base/man +@dirrm lib/R/library/base/latex +@dirrm lib/R/library/base/html +@dirrm lib/R/library/base/help +@dirrm lib/R/library/base/demo +@dirrm lib/R/library/base/R-ex +@dirrm lib/R/library/base/R +@dirrm lib/R/library/base/Meta +@dirrm lib/R/library/base +@dirrm lib/R/library/MASS/scripts +@dirrm lib/R/library/MASS/po/fr/LC_MESSAGES +@dirrm lib/R/library/MASS/po/fr +@dirrm lib/R/library/MASS/po/en@quot/LC_MESSAGES +@dirrm lib/R/library/MASS/po/en@quot +@dirrm lib/R/library/MASS/po +@dirrm lib/R/library/MASS/man +@dirrm lib/R/library/MASS/libs +@dirrm lib/R/library/MASS/latex +@dirrm lib/R/library/MASS/html +@dirrm lib/R/library/MASS/help +@dirrm lib/R/library/MASS/data +@dirrm lib/R/library/MASS/R-ex +@dirrm lib/R/library/MASS/R +@dirrm lib/R/library/MASS/Meta +@dirrm lib/R/library/MASS +@dirrm lib/R/library/KernSmooth/man +@dirrm lib/R/library/KernSmooth/libs +@dirrm lib/R/library/KernSmooth/latex +@dirrm lib/R/library/KernSmooth/html +@dirrm lib/R/library/KernSmooth/help +@dirrm lib/R/library/KernSmooth/R-ex +@dirrm lib/R/library/KernSmooth/R +@dirrm lib/R/library/KernSmooth/Meta +@dirrm lib/R/library/KernSmooth +@dirrm lib/R/library +@dirrm lib/R/lib +@dirrm lib/R/include/R_ext +@dirrm lib/R/include +@dirrm lib/R/etc +@dirrm lib/R/doc/manual +@dirrm lib/R/doc/html/search +@dirrm lib/R/doc/html +@dirrm lib/R/doc +@dirrm lib/R/bin/exec +@dirrm lib/R/bin +@dirrm lib/R diff --git a/math/R/distinfo b/math/R/distinfo index 9e93bda7a48..eec69372765 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1,9 +1,9 @@ -$NetBSD: distinfo,v 1.32 2006/06/13 12:28:09 markd Exp $ +$NetBSD: distinfo,v 1.33 2007/03/14 11:50:34 markd Exp $ -SHA1 (R-2.3.1.tar.gz) = 62cf87f4a273f17d5a55a5ffaf0bfcdfdae3c03d -RMD160 (R-2.3.1.tar.gz) = 061a77f25d3b1144aecdce479aa707e7bea21a82 -Size (R-2.3.1.tar.gz) = 14285120 bytes -SHA1 (patch-aa) = 4041b32f8cc54d6428b47dfac82ceb275bc0ffdf +SHA1 (R-2.4.1.tar.gz) = 5ab0a29a29c35dc2cb06c875539e62b57503c762 +RMD160 (R-2.4.1.tar.gz) = 2a03cc81b870d594a695e9eb1e77720379c60194 +Size (R-2.4.1.tar.gz) = 14570344 bytes +SHA1 (patch-aa) = 917482116fb288c46bee3b8fad8359bc87961bd3 SHA1 (patch-ab) = b724b549cd9920865c4d4ae60c71dff48c4c0c06 -SHA1 (patch-ac) = acf4d4bf230c5128571d19462efd50330eb66812 -SHA1 (patch-ad) = c081d45bdcea860584354b9b35427f70a94f3984 +SHA1 (patch-ac) = 7688043787b2ed5e9a6f21532c1560b10da840b2 +SHA1 (patch-ad) = 666dccbc9741b90bc7af11e51ccf25240906da8b diff --git a/math/R/files/pkg-index.tmpl b/math/R/files/pkg-index.tmpl new file mode 100644 index 00000000000..4a3ddedbb71 --- /dev/null +++ b/math/R/files/pkg-index.tmpl @@ -0,0 +1,25 @@ +# $NetBSD: pkg-index.tmpl,v 1.1 2007/03/14 11:50:34 markd Exp $ +# +# Rebuild R package indexes +# + +case ${STAGE} in +POST-INSTALL) + R CMD ${PERL5} @PREFIX@/lib/R/share/perl/build-help.pl --htmllists 2>/dev/null + ${CAT} @PREFIX@/lib/R/library/*/CONTENTS > @PREFIX@/lib/R/doc/html/search/index.txt 2>/dev/null + ;; +DEINSTALL) + if [ "${PKGBASE}" = "R" ] ; then + ${RM} -f @PREFIX@/lib/R/doc/html/packages.html + ${RM} -f @PREFIX@/lib/R/doc/html/search/index.txt + fi + ;; +POST-DEINSTALL) + if [ "${PKGBASE}" != "R" ] ; then + R CMD ${PERL5} @PREFIX@/lib/R/share/perl/build-help.pl --htmllists 2>/dev/null + ${CAT} @PREFIX@/lib/R/library/*/CONTENTS > @PREFIX@/lib/R/doc/html/search/index.txt 2>/dev/null + fi + ;; +*) + ;; +esac diff --git a/math/R/patches/patch-aa b/math/R/patches/patch-aa index ca6f83f5c41..9845ad87bc3 100644 --- a/math/R/patches/patch-aa +++ b/math/R/patches/patch-aa @@ -1,17 +1,17 @@ -$NetBSD: patch-aa,v 1.16 2006/06/13 12:28:09 markd Exp $ +$NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $ ---- configure.ac.orig 2006-05-18 21:13:59.000000000 +1200 +--- configure.ac.orig 2006-12-04 10:37:52.000000000 +1300 +++ configure.ac -@@ -361,7 +361,7 @@ AC_ARG_WITH([valgrind-instrumentation], - ## needs to come after GNOME - AM_CONDITIONAL(WANT_R_SHLIB, [test "x${want_R_shlib}" = xyes]) +@@ -255,7 +255,7 @@ AC_ARG_ENABLE([BLAS-shlib], + [use_blas_shlib="unset"]) + if test "${want_R_shlib}" = yes; then - LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR" + LIBR="-Wl,-R${prefix}/lib/R/lib\$(R_ARCH) -L\$(R_HOME)/lib\$(R_ARCH) -lR" else LIBR= fi -@@ -628,9 +628,9 @@ if test "${use_readline}" = yes; then +@@ -653,9 +653,9 @@ if test "${use_readline}" = yes; then if test "${use_readline}" = no; then ## only need ncurses if libreadline is not statically linked against it unset ac_cv_lib_readline_rl_callback_read_char @@ -24,7 +24,7 @@ $NetBSD: patch-aa,v 1.16 2006/06/13 12:28:09 markd Exp $ AC_CHECK_LIB(readline, rl_callback_read_char) use_readline="${ac_cv_lib_readline_rl_callback_read_char}" fi -@@ -779,13 +779,6 @@ case "${host_cpu}" in +@@ -798,13 +798,6 @@ case "${host_cpu}" in R_PROG_CC_FLAG([-ieee_with_inexact], R_SH_VAR_ADD(R_XTRA_CFLAGS, [-ieee_with_inexact])) fi @@ -38,7 +38,7 @@ $NetBSD: patch-aa,v 1.16 2006/06/13 12:28:09 markd Exp $ if test "${GXX}" = yes; then R_PROG_CXX_FLAG([-mieee], R_SH_VAR_ADD(R_XTRA_CXXFLAGS, [-mieee])) -@@ -1244,6 +1237,7 @@ case "${host_os}" in +@@ -1327,6 +1320,7 @@ rm -f libconftest${DYLIB_EXT} conftest.c fpicflags= ;; netbsd*) diff --git a/math/R/patches/patch-ac b/math/R/patches/patch-ac index b12b23ea15f..b01903ae409 100644 --- a/math/R/patches/patch-ac +++ b/math/R/patches/patch-ac @@ -1,9 +1,9 @@ -$NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ +$NetBSD: patch-ac,v 1.18 2007/03/14 11:50:35 markd Exp $ ---- configure.orig 2006-06-01 20:12:54.000000000 +1200 +--- configure.orig 2006-12-07 00:16:29.000000000 +1300 +++ configure -@@ -2272,7 +2272,7 @@ else - fi +@@ -2085,7 +2085,7 @@ else + fi; if test "${want_R_shlib}" = yes; then - LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR" @@ -11,7 +11,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ else LIBR= fi -@@ -6580,7 +6580,7 @@ darwin* | rhapsody*) +@@ -6799,7 +6799,7 @@ darwin* | rhapsody*) lt_cv_deplibs_check_method=pass_all ;; @@ -20,7 +20,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ if echo __ELF__ | $CC -E - | grep __ELF__ > /dev/null; then case $host_cpu in i*86 ) -@@ -9101,7 +9101,7 @@ if test -z "$aix_libpath"; then aix_libp +@@ -9324,7 +9324,7 @@ if test -z "$aix_libpath"; then aix_libp ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. @@ -29,7 +29,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ archive_cmds='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes -@@ -9679,7 +9679,7 @@ kfreebsd*-gnu) +@@ -9902,7 +9902,7 @@ kfreebsd*-gnu) dynamic_linker='GNU ld.so' ;; @@ -38,7 +38,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout` version_type=freebsd-$objformat case $version_type in -@@ -12060,7 +12060,7 @@ if test -z "$aix_libpath"; then aix_libp +@@ -12283,7 +12283,7 @@ if test -z "$aix_libpath"; then aix_libp freebsd-elf*) archive_cmds_need_lc_CXX=no ;; @@ -47,7 +47,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ # FreeBSD 3 and later use GNU C++ and GNU ld with standard ELF # conventions ld_shlibs_CXX=yes -@@ -12767,7 +12767,7 @@ echo $ECHO_N "checking for $compiler opt +@@ -12994,7 +12994,7 @@ echo $ECHO_N "checking for $compiler opt ;; esac ;; @@ -56,7 +56,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ # FreeBSD uses GNU C++ ;; hpux9* | hpux10* | hpux11*) -@@ -13378,7 +13378,7 @@ kfreebsd*-gnu) +@@ -13605,7 +13605,7 @@ kfreebsd*-gnu) dynamic_linker='GNU ld.so' ;; @@ -65,7 +65,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout` version_type=freebsd-$objformat case $version_type in -@@ -15949,7 +15949,7 @@ if test -z "$aix_libpath"; then aix_libp +@@ -16176,7 +16176,7 @@ if test -z "$aix_libpath"; then aix_libp ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. @@ -74,7 +74,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ archive_cmds_F77='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_F77='-R$libdir' hardcode_direct_F77=yes -@@ -16527,7 +16527,7 @@ kfreebsd*-gnu) +@@ -16754,7 +16754,7 @@ kfreebsd*-gnu) dynamic_linker='GNU ld.so' ;; @@ -83,7 +83,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout` version_type=freebsd-$objformat case $version_type in -@@ -18296,7 +18296,7 @@ if test -z "$aix_libpath"; then aix_libp +@@ -18527,7 +18527,7 @@ if test -z "$aix_libpath"; then aix_libp ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. @@ -92,7 +92,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ archive_cmds_GCJ='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec_GCJ='-R$libdir' hardcode_direct_GCJ=yes -@@ -18874,7 +18874,7 @@ kfreebsd*-gnu) +@@ -19105,7 +19105,7 @@ kfreebsd*-gnu) dynamic_linker='GNU ld.so' ;; @@ -101,7 +101,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ objformat=`test -x /usr/bin/objformat && /usr/bin/objformat || echo aout` version_type=freebsd-$objformat case $version_type in -@@ -21901,13 +21901,13 @@ fi +@@ -22139,13 +22139,13 @@ fi ## only need ncurses if libreadline is not statically linked against it unset ac_cv_lib_readline_rl_callback_read_char @@ -119,7 +119,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF -@@ -21946,35 +21946,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l +@@ -22184,35 +22184,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then @@ -166,7 +166,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF -@@ -22013,35 +22013,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l +@@ -22251,35 +22251,35 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then @@ -213,7 +213,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ cat >conftest.$ac_ext <<_ACEOF /* confdefs.h. */ _ACEOF -@@ -22080,25 +22080,25 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l +@@ -22318,25 +22318,25 @@ if { (eval echo "$as_me:$LINENO: \"$ac_l ac_status=$? echo "$as_me:$LINENO: \$? = $ac_status" >&5 (exit $ac_status); }; }; then @@ -246,7 +246,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ fi -@@ -27727,6 +27727,7 @@ cat > conftest.c <<EOF +@@ -27973,6 +27973,7 @@ cat > conftest.c <<EOF #else # define F77_SYMBOL(x) x #endif @@ -254,7 +254,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ int main () { exit(0); } -@@ -27796,6 +27797,9 @@ cat > conftest.c <<EOF +@@ -28043,6 +28044,9 @@ cat > conftest.c <<EOF extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y); @@ -264,7 +264,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ int main () { int a[3] = {17, 237, 2000000000}, b[2], res = 0; double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3]; -@@ -27885,6 +27889,9 @@ typedef struct { +@@ -28133,6 +28137,9 @@ typedef struct { extern void F77_SYMBOL(cftest)(Rcomplex *x); @@ -274,7 +274,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ int main () { Rcomplex z[3]; -@@ -28277,157 +28284,6 @@ echo "${ECHO_T}no" >&6 +@@ -28528,157 +28535,6 @@ echo "${ECHO_T}no" >&6 fi fi @@ -432,7 +432,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ if test "${GXX}" = yes; then ac_safe=_mieee echo "$as_me:$LINENO: checking whether ${CXX-c++} accepts -mieee" >&5 -@@ -28762,7 +28618,7 @@ _ACEOF +@@ -29013,7 +28869,7 @@ _ACEOF if test "${GCC}" = yes; then ## only Apple build of gcc supports (and needs?) -no-cpp-precomp ${CC} --version|grep Apple >/dev/null 2>/dev/null @@ -441,7 +441,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ separator="" test -z "${separator}" && separator=" " if test -z "${R_XTRA_CPPFLAGS}"; then -@@ -29726,7 +29582,7 @@ fi ;; +@@ -30053,7 +29909,7 @@ echo "$as_me: WARNING: Use of flat names SHLIB_LIBADD="-lcc_dynamic" fi ;; @@ -450,7 +450,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ ## Only sure for FreeBSD 3 and above. main_ldflags="-export-dynamic" shlib_ldflags="-shared" -@@ -29814,6 +29670,7 @@ fi ;; +@@ -30141,6 +29997,7 @@ echo "$as_me: WARNING: Use of flat names fpicflags= ;; netbsd*) @@ -458,7 +458,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then main_ldflags="-export-dynamic" shlib_ldflags="-shared" -@@ -29912,7 +29769,7 @@ fi +@@ -30240,7 +30097,7 @@ fi : ${FPICFLAGS="${fpicflags}"} if test -z "${FPICFLAGS}"; then case "${host_os}" in @@ -467,7 +467,7 @@ $NetBSD: patch-ac,v 1.17 2006/06/13 12:28:09 markd Exp $ ;; *) { echo "$as_me:$LINENO: WARNING: I could not determine FPICFLAGS." >&5 -@@ -38863,7 +38720,7 @@ cat >>confdefs.h <<\_ACEOF +@@ -39649,7 +39506,7 @@ cat >>confdefs.h <<\_ACEOF _ACEOF r_save_LIBS=${LIBS} diff --git a/math/R/patches/patch-ad b/math/R/patches/patch-ad index 9a6f7eda800..97f100bfed5 100644 --- a/math/R/patches/patch-ad +++ b/math/R/patches/patch-ad @@ -1,13 +1,13 @@ -$NetBSD: patch-ad,v 1.10 2006/06/13 12:28:09 markd Exp $ +$NetBSD: patch-ad,v 1.11 2007/03/14 11:50:35 markd Exp $ ---- src/main/Makefile.in.orig 2006-04-10 10:19:51.000000000 +1200 +--- src/main/Makefile.in.orig 2006-09-05 02:41:33.000000000 +1200 +++ src/main/Makefile.in -@@ -103,7 +103,7 @@ COMMON_DEPENDENCIES = \ +@@ -104,7 +104,7 @@ COMMON_DEPENDENCIES = \ R_binary = R.bin R_bin_OBJECTS = Rmain.o @WANT_R_SHLIB_FALSE@$(OBJECTS) @WANT_R_SHLIB_FALSE@R_bin_LDADD = $(RLIBS) $(EXTRA_LIBS) --@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ -lR -+@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ ${COMPILER_RPATH_FLAG}$(Rexeclibdir) -lR +-@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ -lR @BLAS_SHLIB_TRUE@-lRblas ++@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ ${COMPILER_RPATH_FLAG}$(Rexeclibdir) -lR @BLAS_SHLIB_TRUE@-lRblas R_bin_DEPENDENCIES =@WANT_R_SHLIB_FALSE@ $(RLIBS) $(COMMON_DEPENDENCIES) libR_la = libR$(DYLIB_EXT) |