Updated R to 0.64.1. Too many changes from 0.62.1 to enumerate.

See NEWS file in distribution.

5 files changed, 310 insertions, 185 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index d94c49d5dcd..07a3423c100 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,20 +1,21 @@
-# $NetBSD: Makefile,v 1.5 1999/04/26 18:56:15 garbled Exp $
+# $NetBSD: Makefile,v 1.6 1999/05/25 23:45:05 jlam Exp $
 #
 
-DISTNAME=	R-0.63.1
+DISTNAME=	R-0.64.1
 CATEGORIES=	math
 MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
 		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
 		http://cran.stat.wisc.edu/src/base/ \
-		ftp://ftp.ci.tuwien.ac.at/R/src/base/ \
 		http://SunSITE.auc.dk/R/src/base/ \
 		http://www.stat.unipg.it/pub/stat/statlib/R/CRAN/src/base/ \
 		ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \
 		ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \
-		http://www.stat.math.ethz.ch/R-CRAN/src/base/
+		http://stat.ethz.ch/CRAN/src/base/ \
+		http://www.stats.bris.ac.uk/R/src/base/ \
+		ftp://ftp.ci.tuwien.ac.at/pub/R/src/base/
 EXTRACT_SUFX=	.tgz
 
-MAINTAINER=	lamj@stat.cmu.edu
+MAINTAINER=	jlam@netbsd.org
 HOMEPAGE=	http://lib.stat.cmu.edu/R/CRAN/
 
 .if !exists(/usr/bin/f77)
@@ -33,16 +34,25 @@ CONFIGURE_ARGS+=--enable-readline --with-x
 #
 .if defined(PAPERSIZE)
 R_PAPERSIZE?=	${PAPERSIZE}
+.endif
 .if (${R_PAPERSIZE} == "Letterdj")
 R_PAPERSIZE=	Letter
 .endif
-.endif
 
-LDFLAGS+=	-L${LOCALBASE}/lib
-CONFIGURE_ENV+=	CPPFLAGS="-I${LOCALBASE}/include" \
-		R_PAPERSIZE="${R_PAPERSIZE}"
+.if (${OPSYS} == "SunOS")
+BSD_INSTALL?=	/usr/ucb/install
+.else
+BSD_INSTALL?=	/usr/bin/install
+.endif
+INSTALL_OWN_SCRIPT=	${BSD_INSTALL} ${COPY} -o ${BINOWN} -g ${BINGRP} -m ${BINMODE}
+INSTALL_SCRIPT=		${BSD_INSTALL} ${COPY} -m ${BINMODE}
+INSTALL_DATA=		${BSD_INSTALL} ${COPY} -m 644
+LDFLAGS+=		-L${LOCALBASE}/lib	# for -lreadline
+CONFIGURE_ENV+=		CPPFLAGS="-I${LOCALBASE}/include" \
+			R_PAPERSIZE="${R_PAPERSIZE}"
+MAKE_ENV+=		INSTALL_OWN_SCRIPT="${INSTALL_OWN_SCRIPT}"
 
 post-install:
-	${RMDIR} ${PREFIX}/share/R/library/modreg/data
+	${CHOWN} -R ${SHAREOWN}:${SHAREGRP} ${PREFIX}/share/R
 
 .include "../../mk/bsd.pkg.mk"
diff --git a/math/R/files/md5 b/math/R/files/md5
index 0776e092451..88bfd60894d 100644
--- a/math/R/files/md5
+++ b/math/R/files/md5
@@ -1,3 +1,3 @@
-$NetBSD: md5,v 1.2 1998/12/21 10:29:40 frueauf Exp $
+$NetBSD: md5,v 1.3 1999/05/25 23:45:06 jlam Exp $
 
-MD5 (R-0.63.1.tgz) = 24cc595468a2584328ae30ade1b8e11e
+MD5 (R-0.64.1.tgz) = d6baba9bcacbdcc6a16f9d873cf95b9a
diff --git a/math/R/patches/patch-aa b/math/R/patches/patch-aa
index a6633cad848..431c0bfa1bb 100644
--- a/math/R/patches/patch-aa
+++ b/math/R/patches/patch-aa
@@ -1,8 +1,16 @@
-$NetBSD: patch-aa,v 1.1 1998/12/21 10:29:40 frueauf Exp $
+$NetBSD: patch-aa,v 1.2 1999/05/25 23:45:06 jlam Exp $
 
---- Makeconf.in.orig	Mon Nov 23 04:20:11 1998
-+++ Makeconf.in	Sun Dec 20 12:12:22 1998
-@@ -50,4 +50,4 @@
+--- Makeconf.in.orig	Tue Feb  2 19:16:51 1999
++++ Makeconf.in	Tue May 25 02:52:48 1999
+@@ -20,6 +20,7 @@
+ INSTALL = @INSTALL@
+ INSTALL_DATA = @INSTALL_DATA@
+ INSTALL_PROGRAM = @INSTALL_PROGRAM@
++INSTALL_SCRIPT = @INSTALL_SCRIPT@
+ INSTALL_DIR = ${INSTALL} -d
+ LATEX = @LATEX@
+ LDCMD = @LDCMD@
+@@ -53,4 +54,4 @@
  libdir = @libdir@
  mandir = @mandir@
  
diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab
index 02ce15a7cef..a6ff02626f6 100644
--- a/math/R/patches/patch-ab
+++ b/math/R/patches/patch-ab
@@ -1,19 +1,32 @@
-$NetBSD: patch-ab,v 1.1 1998/12/21 10:29:41 frueauf Exp $
+$NetBSD: patch-ab,v 1.2 1999/05/25 23:45:06 jlam Exp $
 
---- configure.orig	Fri Dec  4 08:06:25 1998
-+++ configure	Sun Dec 20 09:54:23 1998
-@@ -3290,6 +3290,14 @@
-   *linux)
-     DLLFLAGS=-export-dynamic
+--- configure.orig	Fri May  7 06:25:40 1999
++++ configure	Tue May 25 03:01:46 1999
+@@ -812,6 +812,7 @@
+ test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
+ 
+ test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
++test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL} -m 755'
+ 
+ ## Fix a bug in autoconf---the path of the install shell script is
+ ## not cached.  Could also use an absolute path in AC_CONFIG_AUX_DIR().
+@@ -3619,9 +3620,10 @@
      ;;
-+  *netbsd*)
-+    if ${CPP} - -dM </dev/null | grep -q __ELF__; then
-+      DLLFLAGS="-export-dynamic"
-+      SHLIBLDFLAGS="-shared"
-+    else
-+      SHLIBLDFLAGS="-Bshareable"
-+    fi
-+    ;;
-   *sgi*)
-     SHLIBLDFLAGS="-shared"
+   *netbsd*)
+     if ${CPP} - -dM < /dev/null | grep -q __ELF__; then
+-      DLLFLAGS="-export-dynamic"
++      DLLFLAGS="${LDFLAGS} -export-dynamic"
+       SHLIBLDFLAGS="-shared"
+     else
++      DLLFLAGS="${LDFLAGS}"
+       SHLIBLDFLAGS="-Bshareable"
+     fi
      ;;
+@@ -4746,6 +4748,7 @@
+ s%@config_opts@%$config_opts%g
+ s%@INSTALL_PROGRAM@%$INSTALL_PROGRAM%g
+ s%@INSTALL_DATA@%$INSTALL_DATA%g
++s%@INSTALL_SCRIPT@%$INSTALL_SCRIPT%g
+ s%@LN_S@%$LN_S%g
+ s%@RANLIB@%$RANLIB%g
+ s%@YACC@%$YACC%g
diff --git a/math/R/pkg/PLIST b/math/R/pkg/PLIST
index 7f2c6e26b3e..23c00c0149b 100644
--- a/math/R/pkg/PLIST
+++ b/math/R/pkg/PLIST
@@ -1,5 +1,6 @@
-@comment $NetBSD: PLIST,v 1.2 1998/12/21 10:29:42 frueauf Exp $
+@comment $NetBSD: PLIST,v 1.3 1999/05/25 23:45:06 jlam Exp $
 bin/R
+bin/R.binary
 bin/Rd2txt
 bin/Rdconv
 bin/Rdindex
@@ -50,8 +51,8 @@ share/R/bin/BATCH
 share/R/bin/COMPILE
 share/R/bin/INSTALL
 share/R/bin/R
-share/R/bin/R.binary
 share/R/bin/REMOVE
+share/R/bin/Rd2contents
 share/R/bin/Rd2dvi
 share/R/bin/Rd2txt
 share/R/bin/Rdconv
@@ -106,12 +107,13 @@ share/R/doc/html/template.html
 share/R/doc/html/thanks.html
 share/R/doc/html/up.jpg
 share/R/doc/keyword-test
-share/R/doc/manual/ABOUT.tex
-share/R/doc/manual/Man.tex
+share/R/doc/manual/Manual.tex
 share/R/doc/manual/Rd.sty
 share/R/doc/manual/Rd2dvi.tex
+share/R/doc/manual/Reference.tex
 share/R/doc/manual/plotmath.tex
 share/R/doc/manual/primitive-funs.tex
+share/R/doc/manual/programming.tex
 share/R/doc/manual/writing-Rd.tex
 share/R/etc/Makeconf
 share/R/etc/Rdconvlib.pl
@@ -130,45 +132,37 @@ share/R/include/Memory.h
 share/R/include/Platform.h
 share/R/include/PrtUtil.h
 share/R/include/Random.h
+share/R/include/Rinternals.h
 share/R/include/S.h
 share/R/include/S_compat.h
 share/R/include/Utils.h
 share/R/include/f2c.h
 share/R/library/LibIndex
+share/R/library/base/CONTENTS
 share/R/library/base/INDEX
-share/R/library/base/R-ex/Alias.R
 share/R/library/base/R-ex/Arithmetic.R
-share/R/library/base/R-ex/BATCH.R
 share/R/library/base/R-ex/Bessel.R
 share/R/library/base/R-ex/Beta.R
 share/R/library/base/R-ex/Binomial.R
-share/R/library/base/R-ex/C.R
-share/R/library/base/R-ex/COMPILE.R
 share/R/library/base/R-ex/Cauchy.R
 share/R/library/base/R-ex/Chisquare.R
 share/R/library/base/R-ex/Comparison.R
 share/R/library/base/R-ex/Constants.R
 share/R/library/base/R-ex/Control.R
-share/R/library/base/R-ex/Defunct.R
 share/R/library/base/R-ex/Deprecated.R
-share/R/library/base/R-ex/Devices.R
 share/R/library/base/R-ex/Exponential.R
 share/R/library/base/R-ex/Extract.R
 share/R/library/base/R-ex/Extremes.R
 share/R/library/base/R-ex/FDist.R
-share/R/library/base/R-ex/Foreign.R
 share/R/library/base/R-ex/GammaDist.R
 share/R/library/base/R-ex/Geometric.R
 share/R/library/base/R-ex/Hyperbolic.R
 share/R/library/base/R-ex/Hypergeometric.R
-share/R/library/base/R-ex/INSTALL.R
 share/R/library/base/R-ex/IQR.R
-share/R/library/base/R-ex/Internal.R
 share/R/library/base/R-ex/Log.R
 share/R/library/base/R-ex/Logic.R
 share/R/library/base/R-ex/Logistic.R
 share/R/library/base/R-ex/Lognormal.R
-share/R/library/base/R-ex/Machine.R
 share/R/library/base/R-ex/Math.R
 share/R/library/base/R-ex/Memory.R
 share/R/library/base/R-ex/NA.R
@@ -178,14 +172,11 @@ share/R/library/base/R-ex/NegBinomial.R
 share/R/library/base/R-ex/Normal.R
 share/R/library/base/R-ex/Poisson.R
 share/R/library/base/R-ex/Primitive.R
-share/R/library/base/R-ex/REMOVE.R
-share/R/library/base/R-ex/RHOME.R
 share/R/library/base/R-ex/Random.R
+share/R/library/base/R-ex/Recall.R
 share/R/library/base/R-ex/Round.R
-share/R/library/base/R-ex/SHLIB.R
 share/R/library/base/R-ex/SignRank.R
 share/R/library/base/R-ex/Special.R
-share/R/library/base/R-ex/Startup.R
 share/R/library/base/R-ex/TDist.R
 share/R/library/base/R-ex/Trig.R
 share/R/library/base/R-ex/Tukey.R
@@ -195,14 +186,11 @@ share/R/library/base/R-ex/Weibull.R
 share/R/library/base/R-ex/Wilcoxon.R
 share/R/library/base/R-ex/abbreviate.R
 share/R/library/base/R-ex/abline.R
-share/R/library/base/R-ex/acid.R
 share/R/library/base/R-ex/add1.R
-share/R/library/base/R-ex/airmiles.R
-share/R/library/base/R-ex/airquality.R
+share/R/library/base/R-ex/aggregate.R
 share/R/library/base/R-ex/alias.R
 share/R/library/base/R-ex/all.R
 share/R/library/base/R-ex/allnames.R
-share/R/library/base/R-ex/anova.R
 share/R/library/base/R-ex/anscombe.R
 share/R/library/base/R-ex/aov.R
 share/R/library/base/R-ex/aperm.R
@@ -216,7 +204,6 @@ share/R/library/base/R-ex/arrows.R
 share/R/library/base/R-ex/as.function.R
 share/R/library/base/R-ex/assign.R
 share/R/library/base/R-ex/attach.R
-share/R/library/base/R-ex/attenu.R
 share/R/library/base/R-ex/attr.R
 share/R/library/base/R-ex/attributes.R
 share/R/library/base/R-ex/autoload.R
@@ -224,27 +211,22 @@ share/R/library/base/R-ex/ave.R
 share/R/library/base/R-ex/axis.R
 share/R/library/base/R-ex/backsolve.R
 share/R/library/base/R-ex/barplot.R
-share/R/library/base/R-ex/bees.R
 share/R/library/base/R-ex/body.R
 share/R/library/base/R-ex/box.R
 share/R/library/base/R-ex/boxplot.R
 share/R/library/base/R-ex/boxplot.stats.R
-share/R/library/base/R-ex/browser.R
-share/R/library/base/R-ex/bug.report.R
 share/R/library/base/R-ex/bxp.R
 share/R/library/base/R-ex/c.R
 share/R/library/base/R-ex/call.R
-share/R/library/base/R-ex/cars.R
 share/R/library/base/R-ex/case.names.R
 share/R/library/base/R-ex/cat.R
 share/R/library/base/R-ex/cbind.R
-share/R/library/base/R-ex/character.R
 share/R/library/base/R-ex/charmatch.R
-share/R/library/base/R-ex/chickwts.R
+share/R/library/base/R-ex/check.options.R
 share/R/library/base/R-ex/chisq.test.R
 share/R/library/base/R-ex/chol.R
 share/R/library/base/R-ex/chol2inv.R
-share/R/library/base/R-ex/class.R
+share/R/library/base/R-ex/chull.R
 share/R/library/base/R-ex/codes.R
 share/R/library/base/R-ex/coefficients.R
 share/R/library/base/R-ex/col.R
@@ -256,15 +238,9 @@ share/R/library/base/R-ex/complex.R
 share/R/library/base/R-ex/conflicts.R
 share/R/library/base/R-ex/consume.R
 share/R/library/base/R-ex/contour.R
-share/R/library/base/R-ex/contrast.R
-share/R/library/base/R-ex/contrasts.R
-share/R/library/base/R-ex/contributors.R
 share/R/library/base/R-ex/convolve.R
 share/R/library/base/R-ex/coplot.R
-share/R/library/base/R-ex/cor.R
 share/R/library/base/R-ex/count.fields.R
-share/R/library/base/R-ex/cov.wt.R
-share/R/library/base/R-ex/crimes.R
 share/R/library/base/R-ex/crossprod.R
 share/R/library/base/R-ex/cumsum.R
 share/R/library/base/R-ex/curve.R
@@ -272,11 +248,7 @@ share/R/library/base/R-ex/cut.R
 share/R/library/base/R-ex/data.R
 share/R/library/base/R-ex/data.class.R
 share/R/library/base/R-ex/data.frame.R
-share/R/library/base/R-ex/data.matrix.R
 share/R/library/base/R-ex/dataentry.R
-share/R/library/base/R-ex/date.R
-share/R/library/base/R-ex/deaths.R
-share/R/library/base/R-ex/debug.R
 share/R/library/base/R-ex/delay.R
 share/R/library/base/R-ex/delete.response.R
 share/R/library/base/R-ex/demo.R
@@ -286,13 +258,10 @@ share/R/library/base/R-ex/deriv.R
 share/R/library/base/R-ex/detach.R
 share/R/library/base/R-ex/dev.R
 share/R/library/base/R-ex/dev2.R
-share/R/library/base/R-ex/deviance.R
-share/R/library/base/R-ex/df.residual.R
 share/R/library/base/R-ex/diag.R
 share/R/library/base/R-ex/diff.R
 share/R/library/base/R-ex/dim.R
 share/R/library/base/R-ex/dimnames.R
-share/R/library/base/R-ex/discoveries.R
 share/R/library/base/R-ex/do.call.R
 share/R/library/base/R-ex/dotplot.R
 share/R/library/base/R-ex/double.R
@@ -308,30 +277,28 @@ share/R/library/base/R-ex/effects.R
 share/R/library/base/R-ex/eigen.R
 share/R/library/base/R-ex/environment.R
 share/R/library/base/R-ex/esoph.R
-share/R/library/base/R-ex/eurodist.R
+share/R/library/base/R-ex/euro.R
 share/R/library/base/R-ex/eval.R
 share/R/library/base/R-ex/example.R
 share/R/library/base/R-ex/exists.R
 share/R/library/base/R-ex/expand.grid.R
 share/R/library/base/R-ex/expression.R
+share/R/library/base/R-ex/extractAIC.R
 share/R/library/base/R-ex/factor.R
 share/R/library/base/R-ex/factor.scope.R
-share/R/library/base/R-ex/faithful.R
 share/R/library/base/R-ex/family.R
 share/R/library/base/R-ex/fft.R
-share/R/library/base/R-ex/fitted.values.R
+share/R/library/base/R-ex/file.R
+share/R/library/base/R-ex/file.show.R
+share/R/library/base/R-ex/filled.contour.R
 share/R/library/base/R-ex/fivenum.R
-share/R/library/base/R-ex/fix.R
 share/R/library/base/R-ex/formals.R
 share/R/library/base/R-ex/format.R
 share/R/library/base/R-ex/format.info.R
 share/R/library/base/R-ex/formatc.R
 share/R/library/base/R-ex/formula.R
-share/R/library/base/R-ex/frame.R
-share/R/library/base/R-ex/freeny.R
 share/R/library/base/R-ex/function.R
 share/R/library/base/R-ex/gc.R
-share/R/library/base/R-ex/gctorture.R
 share/R/library/base/R-ex/get.R
 share/R/library/base/R-ex/getenv.R
 share/R/library/base/R-ex/gl.R
@@ -345,56 +312,52 @@ share/R/library/base/R-ex/help.R
 share/R/library/base/R-ex/help.start.R
 share/R/library/base/R-ex/hist.R
 share/R/library/base/R-ex/hsv.R
-share/R/library/base/R-ex/identify.R
 share/R/library/base/R-ex/ifelse.R
 share/R/library/base/R-ex/image.R
 share/R/library/base/R-ex/infert.R
 share/R/library/base/R-ex/influence.measures.R
-share/R/library/base/R-ex/insects.R
-share/R/library/base/R-ex/integer.R
+share/R/library/base/R-ex/interaction.R
 share/R/library/base/R-ex/interactive.R
 share/R/library/base/R-ex/invisible.R
 share/R/library/base/R-ex/is.finite.R
-share/R/library/base/R-ex/is.function.R
 share/R/library/base/R-ex/is.language.R
 share/R/library/base/R-ex/is.recursive.R
-share/R/library/base/R-ex/is.single.R
 share/R/library/base/R-ex/isR.R
-share/R/library/base/R-ex/islands.R
-share/R/library/base/R-ex/judges.R
+share/R/library/base/R-ex/jitter.R
 share/R/library/base/R-ex/kappa.R
-share/R/library/base/R-ex/labels.R
+share/R/library/base/R-ex/kronecker.R
 share/R/library/base/R-ex/lapply.R
 share/R/library/base/R-ex/layout.R
 share/R/library/base/R-ex/legend.R
 share/R/library/base/R-ex/length.R
-share/R/library/base/R-ex/levels.R
+share/R/library/base/R-ex/levels.factor.R
 share/R/library/base/R-ex/library.R
 share/R/library/base/R-ex/library.dynam.R
-share/R/library/base/R-ex/license.R
 share/R/library/base/R-ex/lines.R
 share/R/library/base/R-ex/list.R
+share/R/library/base/R-ex/list.files.R
 share/R/library/base/R-ex/lm.R
 share/R/library/base/R-ex/lm.influence.R
 share/R/library/base/R-ex/lm.summaries.R
 share/R/library/base/R-ex/load.R
-share/R/library/base/R-ex/locator.R
-share/R/library/base/R-ex/logical.R
+share/R/library/base/R-ex/loglin.R
 share/R/library/base/R-ex/longley.R
 share/R/library/base/R-ex/lower.tri.R
 share/R/library/base/R-ex/lowess.R
 share/R/library/base/R-ex/ls.R
 share/R/library/base/R-ex/ls.diag.R
-share/R/library/base/R-ex/ls.print.R
 share/R/library/base/R-ex/lsfit.R
 share/R/library/base/R-ex/machine.R
-share/R/library/base/R-ex/macintosh.R
 share/R/library/base/R-ex/mad.R
 share/R/library/base/R-ex/mahalanobis.R
+share/R/library/base/R-ex/make.link.R
+share/R/library/base/R-ex/make.names.R
+share/R/library/base/R-ex/make.socket.R
 share/R/library/base/R-ex/mat.or.vec.R
 share/R/library/base/R-ex/match.R
 share/R/library/base/R-ex/match.arg.R
 share/R/library/base/R-ex/match.call.R
+share/R/library/base/R-ex/match.fun.R
 share/R/library/base/R-ex/matmult.R
 share/R/library/base/R-ex/matplot.R
 share/R/library/base/R-ex/matrix.R
@@ -417,7 +380,6 @@ share/R/library/base/R-ex/names.R
 share/R/library/base/R-ex/nargs.R
 share/R/library/base/R-ex/nchar.R
 share/R/library/base/R-ex/nextn.R
-share/R/library/base/R-ex/nhtemp.R
 share/R/library/base/R-ex/nlevels.R
 share/R/library/base/R-ex/nlm.R
 share/R/library/base/R-ex/noquote.R
@@ -431,6 +393,7 @@ share/R/library/base/R-ex/options.R
 share/R/library/base/R-ex/order.R
 share/R/library/base/R-ex/outer.R
 share/R/library/base/R-ex/pairs.R
+share/R/library/base/R-ex/pairs.formula.R
 share/R/library/base/R-ex/palette.R
 share/R/library/base/R-ex/palettes.R
 share/R/library/base/R-ex/panel.smooth.R
@@ -438,10 +401,9 @@ share/R/library/base/R-ex/par.R
 share/R/library/base/R-ex/parse.R
 share/R/library/base/R-ex/paste.R
 share/R/library/base/R-ex/persp.R
-share/R/library/base/R-ex/phones.R
 share/R/library/base/R-ex/pictex.R
 share/R/library/base/R-ex/piechart.R
-share/R/library/base/R-ex/pigs.R
+share/R/library/base/R-ex/plants.R
 share/R/library/base/R-ex/plot.R
 share/R/library/base/R-ex/plot.window.R
 share/R/library/base/R-ex/plot.xy.R
@@ -455,11 +417,9 @@ share/R/library/base/R-ex/polygon.R
 share/R/library/base/R-ex/polyroot.R
 share/R/library/base/R-ex/postscript.R
 share/R/library/base/R-ex/ppoints.R
-share/R/library/base/R-ex/precip.R
 share/R/library/base/R-ex/predict.R
 share/R/library/base/R-ex/predict.glm.R
 share/R/library/base/R-ex/predict.lm.R
-share/R/library/base/R-ex/presidents.R
 share/R/library/base/R-ex/pretty.R
 share/R/library/base/R-ex/print.R
 share/R/library/base/R-ex/print.coefmat.R
@@ -473,30 +433,25 @@ share/R/library/base/R-ex/prop.test.R
 share/R/library/base/R-ex/qqnorm.R
 share/R/library/base/R-ex/qr.R
 share/R/library/base/R-ex/qraux.R
-share/R/library/base/R-ex/quakes.R
 share/R/library/base/R-ex/quantile.R
 share/R/library/base/R-ex/quit.R
 share/R/library/base/R-ex/range.R
 share/R/library/base/R-ex/rank.R
 share/R/library/base/R-ex/read.fwf.R
-share/R/library/base/R-ex/read.table.R
+share/R/library/base/R-ex/read.socket.R
 share/R/library/base/R-ex/readline.R
-share/R/library/base/R-ex/real.R
 share/R/library/base/R-ex/rect.R
-share/R/library/base/R-ex/remove.R
+share/R/library/base/R-ex/relevel.R
 share/R/library/base/R-ex/rep.R
-share/R/library/base/R-ex/replace.R
 share/R/library/base/R-ex/replications.R
-share/R/library/base/R-ex/residuals.R
 share/R/library/base/R-ex/rev.R
 share/R/library/base/R-ex/rgb.R
-share/R/library/base/R-ex/rivers.R
+share/R/library/base/R-ex/rle.R
 share/R/library/base/R-ex/row.R
 share/R/library/base/R-ex/rowsum.R
 share/R/library/base/R-ex/rug.R
 share/R/library/base/R-ex/sample.R
 share/R/library/base/R-ex/save.R
-share/R/library/base/R-ex/savings.R
 share/R/library/base/R-ex/scale.R
 share/R/library/base/R-ex/scan.R
 share/R/library/base/R-ex/screen.R
@@ -507,14 +462,13 @@ share/R/library/base/R-ex/seq.R
 share/R/library/base/R-ex/sequence.R
 share/R/library/base/R-ex/sign.R
 share/R/library/base/R-ex/sink.R
+share/R/library/base/R-ex/sleep.R
 share/R/library/base/R-ex/solve.R
 share/R/library/base/R-ex/sort.R
-share/R/library/base/R-ex/source.R
 share/R/library/base/R-ex/splinefun.R
 share/R/library/base/R-ex/split.R
 share/R/library/base/R-ex/stackloss.R
 share/R/library/base/R-ex/stat.anova.R
-share/R/library/base/R-ex/state.R
 share/R/library/base/R-ex/stem.R
 share/R/library/base/R-ex/step.R
 share/R/library/base/R-ex/stop.R
@@ -526,7 +480,6 @@ share/R/library/base/R-ex/strwidth.R
 share/R/library/base/R-ex/subset.R
 share/R/library/base/R-ex/substitute.R
 share/R/library/base/R-ex/substr.R
-share/R/library/base/R-ex/sum.R
 share/R/library/base/R-ex/summary.R
 share/R/library/base/R-ex/svd.R
 share/R/library/base/R-ex/sweep.R
@@ -543,41 +496,36 @@ share/R/library/base/R-ex/table.R
 share/R/library/base/R-ex/tabulate.R
 share/R/library/base/R-ex/tapply.R
 share/R/library/base/R-ex/tempfile.R
-share/R/library/base/R-ex/terms.R
 share/R/library/base/R-ex/text.R
 share/R/library/base/R-ex/time.R
 share/R/library/base/R-ex/title.R
 share/R/library/base/R-ex/trace.R
 share/R/library/base/R-ex/traceback.R
 share/R/library/base/R-ex/transform.R
-share/R/library/base/R-ex/trees.R
 share/R/library/base/R-ex/ts.R
 share/R/library/base/R-ex/typeof.R
 share/R/library/base/R-ex/unique.R
 share/R/library/base/R-ex/uniroot.R
 share/R/library/base/R-ex/units.R
-share/R/library/base/R-ex/unlink.R
 share/R/library/base/R-ex/unlist.R
 share/R/library/base/R-ex/update.R
-share/R/library/base/R-ex/update.formula.R
 share/R/library/base/R-ex/update.lm.R
-share/R/library/base/R-ex/uspop.R
 share/R/library/base/R-ex/var.R
 share/R/library/base/R-ex/vector.R
-share/R/library/base/R-ex/volcano.R
 share/R/library/base/R-ex/warning.R
-share/R/library/base/R-ex/warpbreaks.R
 share/R/library/base/R-ex/weighted.mean.R
 share/R/library/base/R-ex/which.R
 share/R/library/base/R-ex/window.R
-share/R/library/base/R-ex/women.R
 share/R/library/base/R-ex/write.R
-share/R/library/base/R-ex/write.table.R
-share/R/library/base/R-ex/x11.R
 share/R/library/base/R-ex/xy.coords.R
+share/R/library/base/R-ex/zAlias.R
+share/R/library/base/R-ex/zC.R
+share/R/library/base/R-ex/zMachine.R
+share/R/library/base/R-ex/zMethods.R
 share/R/library/base/R/Rprofile
 share/R/library/base/R/base
 share/R/library/base/TITLE
+share/R/library/base/data/00Index
 share/R/library/base/data/acid.R
 share/R/library/base/data/airmiles.R
 share/R/library/base/data/airquality.tab
@@ -587,15 +535,16 @@ share/R/library/base/data/attitude.R
 share/R/library/base/data/bees.R
 share/R/library/base/data/cars.R
 share/R/library/base/data/chickwts.R
+share/R/library/base/data/co2.R
 share/R/library/base/data/consume.R
 share/R/library/base/data/crimes.tab
 share/R/library/base/data/deaths.R
 share/R/library/base/data/discoveries.R
 share/R/library/base/data/esoph.R
+share/R/library/base/data/euro.R
 share/R/library/base/data/eurodist.R
 share/R/library/base/data/faithful.R
 share/R/library/base/data/freeny.R
-share/R/library/base/data/index.doc
 share/R/library/base/data/infert.R
 share/R/library/base/data/insects.R
 share/R/library/base/data/iris.R
@@ -614,7 +563,6 @@ share/R/library/base/data/pressure.R
 share/R/library/base/data/quakes.R
 share/R/library/base/data/randu.R
 share/R/library/base/data/rivers.R
-share/R/library/base/data/rock.rda
 share/R/library/base/data/savings.R
 share/R/library/base/data/sleep.R
 share/R/library/base/data/stackloss.R
@@ -627,14 +575,12 @@ share/R/library/base/data/volcano.R
 share/R/library/base/data/warpbreaks.R
 share/R/library/base/data/women.R
 share/R/library/base/help/00Titles
-share/R/library/base/help/Alias
 share/R/library/base/help/AnIndex
 share/R/library/base/help/Arithmetic
 share/R/library/base/help/BATCH
 share/R/library/base/help/Bessel
 share/R/library/base/help/Beta
 share/R/library/base/help/Binomial
-share/R/library/base/help/C
 share/R/library/base/help/COMPILE
 share/R/library/base/help/Cauchy
 share/R/library/base/help/Chisquare
@@ -660,7 +606,6 @@ share/R/library/base/help/Log
 share/R/library/base/help/Logic
 share/R/library/base/help/Logistic
 share/R/library/base/help/Lognormal
-share/R/library/base/help/Machine
 share/R/library/base/help/Math
 share/R/library/base/help/Memory
 share/R/library/base/help/NA
@@ -673,6 +618,7 @@ share/R/library/base/help/Primitive
 share/R/library/base/help/REMOVE
 share/R/library/base/help/RHOME
 share/R/library/base/help/Random
+share/R/library/base/help/Recall
 share/R/library/base/help/Round
 share/R/library/base/help/SHLIB
 share/R/library/base/help/SignRank
@@ -689,6 +635,7 @@ share/R/library/base/help/abbreviate
 share/R/library/base/help/abline
 share/R/library/base/help/acid
 share/R/library/base/help/add1
+share/R/library/base/help/aggregate
 share/R/library/base/help/airmiles
 share/R/library/base/help/airquality
 share/R/library/base/help/alias
@@ -709,6 +656,7 @@ share/R/library/base/help/as.function
 share/R/library/base/help/assign
 share/R/library/base/help/attach
 share/R/library/base/help/attenu
+share/R/library/base/help/attitude
 share/R/library/base/help/attr
 share/R/library/base/help/attributes
 share/R/library/base/help/autoload
@@ -732,11 +680,15 @@ share/R/library/base/help/cat
 share/R/library/base/help/cbind
 share/R/library/base/help/character
 share/R/library/base/help/charmatch
+share/R/library/base/help/check.options
 share/R/library/base/help/chickwts
 share/R/library/base/help/chisq.test
 share/R/library/base/help/chol
 share/R/library/base/help/chol2inv
+share/R/library/base/help/chull
 share/R/library/base/help/class
+share/R/library/base/help/close.socket
+share/R/library/base/help/co2
 share/R/library/base/help/codes
 share/R/library/base/help/coefficients
 share/R/library/base/help/col
@@ -753,6 +705,7 @@ share/R/library/base/help/contrasts
 share/R/library/base/help/contributors
 share/R/library/base/help/convolve
 share/R/library/base/help/coplot
+share/R/library/base/help/copyright
 share/R/library/base/help/cor
 share/R/library/base/help/count.fields
 share/R/library/base/help/cov.wt
@@ -800,17 +753,22 @@ share/R/library/base/help/effects
 share/R/library/base/help/eigen
 share/R/library/base/help/environment
 share/R/library/base/help/esoph
+share/R/library/base/help/euro
 share/R/library/base/help/eurodist
 share/R/library/base/help/eval
 share/R/library/base/help/example
 share/R/library/base/help/exists
 share/R/library/base/help/expand.grid
 share/R/library/base/help/expression
+share/R/library/base/help/extractAIC
 share/R/library/base/help/factor
 share/R/library/base/help/factor.scope
 share/R/library/base/help/faithful
 share/R/library/base/help/family
 share/R/library/base/help/fft
+share/R/library/base/help/file
+share/R/library/base/help/file.show
+share/R/library/base/help/filled.contour
 share/R/library/base/help/fitted.values
 share/R/library/base/help/fivenum
 share/R/library/base/help/fix
@@ -840,12 +798,15 @@ share/R/library/base/help/hsv
 share/R/library/base/help/identify
 share/R/library/base/help/ifelse
 share/R/library/base/help/image
+share/R/library/base/help/index.search
 share/R/library/base/help/infert
 share/R/library/base/help/influence.measures
 share/R/library/base/help/insects
 share/R/library/base/help/integer
+share/R/library/base/help/interaction
 share/R/library/base/help/interactive
 share/R/library/base/help/invisible
+share/R/library/base/help/iris
 share/R/library/base/help/is.finite
 share/R/library/base/help/is.function
 share/R/library/base/help/is.language
@@ -853,25 +814,30 @@ share/R/library/base/help/is.recursive
 share/R/library/base/help/is.single
 share/R/library/base/help/isR
 share/R/library/base/help/islands
+share/R/library/base/help/jitter
 share/R/library/base/help/judges
 share/R/library/base/help/kappa
+share/R/library/base/help/kronecker
 share/R/library/base/help/labels
 share/R/library/base/help/lapply
 share/R/library/base/help/layout
 share/R/library/base/help/legend
 share/R/library/base/help/length
 share/R/library/base/help/levels
+share/R/library/base/help/levels.factor
 share/R/library/base/help/library
 share/R/library/base/help/library.dynam
 share/R/library/base/help/license
 share/R/library/base/help/lines
 share/R/library/base/help/list
+share/R/library/base/help/list.files
 share/R/library/base/help/lm
 share/R/library/base/help/lm.influence
 share/R/library/base/help/lm.summaries
 share/R/library/base/help/load
 share/R/library/base/help/locator
 share/R/library/base/help/logical
+share/R/library/base/help/loglin
 share/R/library/base/help/longley
 share/R/library/base/help/lower.tri
 share/R/library/base/help/lowess
@@ -883,10 +849,15 @@ share/R/library/base/help/machine
 share/R/library/base/help/macintosh
 share/R/library/base/help/mad
 share/R/library/base/help/mahalanobis
+share/R/library/base/help/make.link
+share/R/library/base/help/make.names
+share/R/library/base/help/make.socket
+share/R/library/base/help/make.tables
 share/R/library/base/help/mat.or.vec
 share/R/library/base/help/match
 share/R/library/base/help/match.arg
 share/R/library/base/help/match.call
+share/R/library/base/help/match.fun
 share/R/library/base/help/matmult
 share/R/library/base/help/matplot
 share/R/library/base/help/matrix
@@ -901,6 +872,7 @@ share/R/library/base/help/model.frame
 share/R/library/base/help/model.matrix
 share/R/library/base/help/model.tables
 share/R/library/base/help/mosaicplot
+share/R/library/base/help/mtcars
 share/R/library/base/help/mtext
 share/R/library/base/help/na.action
 share/R/library/base/help/na.fail
@@ -922,7 +894,9 @@ share/R/library/base/help/optimize
 share/R/library/base/help/options
 share/R/library/base/help/order
 share/R/library/base/help/outer
+share/R/library/base/help/page
 share/R/library/base/help/pairs
+share/R/library/base/help/pairs.formula
 share/R/library/base/help/palette
 share/R/library/base/help/palettes
 share/R/library/base/help/panel.smooth
@@ -934,6 +908,7 @@ share/R/library/base/help/phones
 share/R/library/base/help/pictex
 share/R/library/base/help/piechart
 share/R/library/base/help/pigs
+share/R/library/base/help/plants
 share/R/library/base/help/plot
 share/R/library/base/help/plot.window
 share/R/library/base/help/plot.xy
@@ -952,6 +927,7 @@ share/R/library/base/help/predict
 share/R/library/base/help/predict.glm
 share/R/library/base/help/predict.lm
 share/R/library/base/help/presidents
+share/R/library/base/help/pressure
 share/R/library/base/help/pretty
 share/R/library/base/help/print
 share/R/library/base/help/print.coefmat
@@ -968,14 +944,16 @@ share/R/library/base/help/qraux
 share/R/library/base/help/quakes
 share/R/library/base/help/quantile
 share/R/library/base/help/quit
+share/R/library/base/help/randu
 share/R/library/base/help/range
 share/R/library/base/help/rank
 share/R/library/base/help/read.fwf
+share/R/library/base/help/read.socket
 share/R/library/base/help/read.table
 share/R/library/base/help/readline
 share/R/library/base/help/real
 share/R/library/base/help/rect
-share/R/library/base/help/remove
+share/R/library/base/help/relevel
 share/R/library/base/help/rep
 share/R/library/base/help/replace
 share/R/library/base/help/replications
@@ -983,6 +961,8 @@ share/R/library/base/help/residuals
 share/R/library/base/help/rev
 share/R/library/base/help/rgb
 share/R/library/base/help/rivers
+share/R/library/base/help/rle
+share/R/library/base/help/rm
 share/R/library/base/help/row
 share/R/library/base/help/rowsum
 share/R/library/base/help/rug
@@ -999,6 +979,7 @@ share/R/library/base/help/seq
 share/R/library/base/help/sequence
 share/R/library/base/help/sign
 share/R/library/base/help/sink
+share/R/library/base/help/sleep
 share/R/library/base/help/solve
 share/R/library/base/help/sort
 share/R/library/base/help/source
@@ -1020,6 +1001,7 @@ share/R/library/base/help/substitute
 share/R/library/base/help/substr
 share/R/library/base/help/sum
 share/R/library/base/help/summary
+share/R/library/base/help/sunspots
 share/R/library/base/help/svd
 share/R/library/base/help/sweep
 share/R/library/base/help/swiss
@@ -1067,14 +1049,16 @@ share/R/library/base/help/write
 share/R/library/base/help/write.table
 share/R/library/base/help/x11
 share/R/library/base/help/xy.coords
+share/R/library/base/help/zAlias
+share/R/library/base/help/zC
+share/R/library/base/help/zMachine
+share/R/library/base/help/zMethods
 share/R/library/base/html/00Index.html
-share/R/library/base/html/Alias.html
 share/R/library/base/html/Arithmetic.html
 share/R/library/base/html/BATCH.html
 share/R/library/base/html/Bessel.html
 share/R/library/base/html/Beta.html
 share/R/library/base/html/Binomial.html
-share/R/library/base/html/C.html
 share/R/library/base/html/COMPILE.html
 share/R/library/base/html/Cauchy.html
 share/R/library/base/html/Chisquare.html
@@ -1100,7 +1084,6 @@ share/R/library/base/html/Log.html
 share/R/library/base/html/Logic.html
 share/R/library/base/html/Logistic.html
 share/R/library/base/html/Lognormal.html
-share/R/library/base/html/Machine.html
 share/R/library/base/html/Math.html
 share/R/library/base/html/Memory.html
 share/R/library/base/html/NA.html
@@ -1113,6 +1096,7 @@ share/R/library/base/html/Primitive.html
 share/R/library/base/html/REMOVE.html
 share/R/library/base/html/RHOME.html
 share/R/library/base/html/Random.html
+share/R/library/base/html/Recall.html
 share/R/library/base/html/Round.html
 share/R/library/base/html/SHLIB.html
 share/R/library/base/html/SignRank.html
@@ -1129,6 +1113,7 @@ share/R/library/base/html/abbreviate.html
 share/R/library/base/html/abline.html
 share/R/library/base/html/acid.html
 share/R/library/base/html/add1.html
+share/R/library/base/html/aggregate.html
 share/R/library/base/html/airmiles.html
 share/R/library/base/html/airquality.html
 share/R/library/base/html/alias.html
@@ -1149,6 +1134,7 @@ share/R/library/base/html/as.function.html
 share/R/library/base/html/assign.html
 share/R/library/base/html/attach.html
 share/R/library/base/html/attenu.html
+share/R/library/base/html/attitude.html
 share/R/library/base/html/attr.html
 share/R/library/base/html/attributes.html
 share/R/library/base/html/autoload.html
@@ -1172,11 +1158,15 @@ share/R/library/base/html/cat.html
 share/R/library/base/html/cbind.html
 share/R/library/base/html/character.html
 share/R/library/base/html/charmatch.html
+share/R/library/base/html/check.options.html
 share/R/library/base/html/chickwts.html
 share/R/library/base/html/chisq.test.html
 share/R/library/base/html/chol.html
 share/R/library/base/html/chol2inv.html
+share/R/library/base/html/chull.html
 share/R/library/base/html/class.html
+share/R/library/base/html/close.socket.html
+share/R/library/base/html/co2.html
 share/R/library/base/html/codes.html
 share/R/library/base/html/coefficients.html
 share/R/library/base/html/col.html
@@ -1193,6 +1183,7 @@ share/R/library/base/html/contrasts.html
 share/R/library/base/html/contributors.html
 share/R/library/base/html/convolve.html
 share/R/library/base/html/coplot.html
+share/R/library/base/html/copyright.html
 share/R/library/base/html/cor.html
 share/R/library/base/html/count.fields.html
 share/R/library/base/html/cov.wt.html
@@ -1240,17 +1231,22 @@ share/R/library/base/html/effects.html
 share/R/library/base/html/eigen.html
 share/R/library/base/html/environment.html
 share/R/library/base/html/esoph.html
+share/R/library/base/html/euro.html
 share/R/library/base/html/eurodist.html
 share/R/library/base/html/eval.html
 share/R/library/base/html/example.html
 share/R/library/base/html/exists.html
 share/R/library/base/html/expand.grid.html
 share/R/library/base/html/expression.html
+share/R/library/base/html/extractAIC.html
 share/R/library/base/html/factor.html
 share/R/library/base/html/factor.scope.html
 share/R/library/base/html/faithful.html
 share/R/library/base/html/family.html
 share/R/library/base/html/fft.html
+share/R/library/base/html/file.html
+share/R/library/base/html/file.show.html
+share/R/library/base/html/filled.contour.html
 share/R/library/base/html/fitted.values.html
 share/R/library/base/html/fivenum.html
 share/R/library/base/html/fix.html
@@ -1280,12 +1276,15 @@ share/R/library/base/html/hsv.html
 share/R/library/base/html/identify.html
 share/R/library/base/html/ifelse.html
 share/R/library/base/html/image.html
+share/R/library/base/html/index.search.html
 share/R/library/base/html/infert.html
 share/R/library/base/html/influence.measures.html
 share/R/library/base/html/insects.html
 share/R/library/base/html/integer.html
+share/R/library/base/html/interaction.html
 share/R/library/base/html/interactive.html
 share/R/library/base/html/invisible.html
+share/R/library/base/html/iris.html
 share/R/library/base/html/is.finite.html
 share/R/library/base/html/is.function.html
 share/R/library/base/html/is.language.html
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