Update R to 0.90.1. Changes are tons of changes and bugfixes, too

numerous to list here (see http://cran.r-project.org/src/base/NEWS for
more information).

8 files changed, 1913 insertions, 1323 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index ab5e52b0455..29232303869 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,9 +1,11 @@
-# $NetBSD: Makefile,v 1.10 1999/11/23 17:37:28 dmcmahill Exp $
+# $NetBSD: Makefile,v 1.11 2000/01/12 22:05:30 rh Exp $
 #
 
-DISTNAME=	R-0.64.2
+DISTNAME=	R-0.90.1
 CATEGORIES=	math
-MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
+MASTER_SITES=	http://cran.r-project.org/src/base/ \
+		ftp://cran.r-project.org/pub/R/src/base/ \
+		http://lib.stat.cmu.edu/R/CRAN/src/base/ \
 		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
 		http://cran.stat.wisc.edu/src/base/ \
 		http://SunSITE.auc.dk/R/src/base/ \
@@ -12,17 +14,19 @@ MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
 		ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \
 		http://stat.ethz.ch/CRAN/src/base/ \
 		http://www.stats.bris.ac.uk/R/src/base/ \
-		ftp://ftp.ci.tuwien.ac.at/pub/R/src/base/
+		http://cran.at.r-project.org/src/base/ \
+		ftp://cran.at.r-project.org/pub/R/src/base/
 EXTRACT_SUFX=	.tgz
 
 MAINTAINER=	jlam@netbsd.org
-HOMEPAGE=	http://lib.stat.cmu.edu/R/CRAN/
+HOMEPAGE=	http://cran.r-project.org/
 
 DEPENDS+=	readline-4.0:../../devel/readline
 
 USE_FORTRAN=	yes
 USE_X11=	yes
 USE_PERL5=	yes
+USE_GMAKE=	yes
 GNU_CONFIGURE=	yes
 CONFIGURE_ARGS+=--enable-readline --with-x
 
diff --git a/math/R/files/md5 b/math/R/files/md5
index 150634fb816..538804c453b 100644
--- a/math/R/files/md5
+++ b/math/R/files/md5
@@ -1,3 +1,3 @@
-$NetBSD: md5,v 1.4 1999/08/26 23:52:22 jlam Exp $
+$NetBSD: md5,v 1.5 2000/01/12 22:05:32 rh Exp $
 
-MD5 (R-0.64.2.tgz) = a25197e6ed875628de6bb9fc6ce34fe4
+MD5 (R-0.90.1.tgz) = 5ff7ed7ac53b7e968a373c9cf3099443
diff --git a/math/R/files/patch-sum b/math/R/files/patch-sum
index 1697f356b42..bc3e59af526 100644
--- a/math/R/files/patch-sum
+++ b/math/R/files/patch-sum
@@ -1,8 +1,8 @@
-$NetBSD: patch-sum,v 1.2 1999/08/26 23:52:22 jlam Exp $
+$NetBSD: patch-sum,v 1.3 2000/01/12 22:05:32 rh Exp $
 
 MD5 (patch-aa) = f11a1756dbe1f0d3499cce6919f5fce5
-MD5 (patch-ab) = 531d0693101c2643614367fc5e80fac3
-MD5 (patch-ae) = 15ea96c64228ee0836bac46a2a1c1c7e
-MD5 (patch-af) = 16d1f1b836f457aaa14127658fde33b8
-MD5 (patch-ag) = bc27506dada75af67da6905b2bac982d
+MD5 (patch-ab) = f7eba6b61875f0e55bc8edd1eca67c39
+MD5 (patch-ae) = 97a850f5efd0f91571361750e69b35eb
+MD5 (patch-af) = 67bcec4540b994104ba99b35667f6d10
+MD5 (patch-ag) = 62f3628549a1e9a4c1440e05548f2cb1
 MD5 (patch-ah) = 37e5d8f9aa3a296a62150a8269415807
diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab
index d609f0759a4..08423e2bb5f 100644
--- a/math/R/patches/patch-ab
+++ b/math/R/patches/patch-ab
@@ -1,16 +1,24 @@
-$NetBSD: patch-ab,v 1.3 1999/08/26 23:52:22 jlam Exp $
+$NetBSD: patch-ab,v 1.4 2000/01/12 22:05:32 rh Exp $
 
---- configure.orig	Fri Jul  2 08:23:14 1999
-+++ configure	Thu Aug 26 18:32:19 1999
-@@ -3748,9 +3748,10 @@
+--- configure.orig	Wed Dec 15 13:29:04 1999
++++ configure	Wed Jan 12 21:19:24 2000
+@@ -5377,9 +5377,10 @@
      ;;
    *netbsd*)
      if ${CPP} - -dM < /dev/null | grep -q __ELF__; then
--      DLLFLAGS="-export-dynamic"
-+      DLLFLAGS="${LDFLAGS} -export-dynamic"
-       SHLIBLDFLAGS="-shared"
+-      dllflags="-export-dynamic"
++      dllflags="${LDFLAGS} -export-dynamic"
+       shlibldflags="-shared"
      else
-+      DLLFLAGS="${LDFLAGS}"
-       SHLIBLDFLAGS="-Bshareable"
++      dllflags="${LDFLAGS}"
+       shlibldflags="-Bshareable"
      fi
      ;;
+@@ -6548,6 +6549,7 @@
+ s%@AWK@%$AWK%g
+ s%@INSTALL_PROGRAM@%$INSTALL_PROGRAM%g
+ s%@INSTALL_DATA@%$INSTALL_DATA%g
++s%@INSTALL_SCRIPT@%$INSTALL_SCRIPT%g
+ s%@LN_S@%$LN_S%g
+ s%@RANLIB@%$RANLIB%g
+ s%@YACC@%$YACC%g
diff --git a/math/R/patches/patch-ae b/math/R/patches/patch-ae
index b4bc04a7333..06167e144b7 100644
--- a/math/R/patches/patch-ae
+++ b/math/R/patches/patch-ae
@@ -1,22 +1,20 @@
-$NetBSD: patch-ae,v 1.2 1999/08/26 23:52:22 jlam Exp $
+$NetBSD: patch-ae,v 1.3 2000/01/12 22:05:33 rh Exp $
 
---- Makefile.in.orig	Mon Jun 28 09:46:08 1999
-+++ Makefile.in	Thu Aug 26 18:41:20 1999
-@@ -49,16 +49,20 @@
+--- Makefile.in.orig	Wed Jan 12 20:01:29 2000
++++ Makefile.in	Wed Jan 12 20:07:14 2000
+@@ -51,7 +51,7 @@
  	    $(INSTALL_DATA) $${f} $(rhome); \
  	  done)
  	@echo "Installing executables ..."
--	@$(INSTALL_PROGRAM) bin/R.binary $(rhome)/bin
-+	@$(INSTALL_PROGRAM) bin/R.binary $(bindir)
-+	@if [ -f bin/R.gnome ]; then \
-+	  $(INSTALL_PROGRAM) bin/R.gnome $(bindir); \
-+	fi
- 	@cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(rhome)/bin/R
- 	@cat bin/R | sed "s@RHOME=.*@RHOME=$(rhome)@" > $(bindir)/R
- 	@chmod 755 $(bindir)/R $(rhome)/bin/R
+-	@$(INSTALL_PROGRAM) bin/R.X11 $(rhome)/bin
++	@$(INSTALL_PROGRAM) bin/R.X11 $(bindir)
+ 	@if test -x bin/R.gnome; then \
+ 	  $(INSTALL_PROGRAM) bin/R.gnome $(rhome)/bin; \
+ 	fi
+@@ -61,10 +61,10 @@
  	@for f in `ls bin/* | grep -v '^bin/R\**$$' \
-+                            | grep -v '^bin/R.gnome\**$$' \
-                             | grep -v '^bin/R.binary\**$$'`; do \
+                             | grep -v '^bin/R.X11\**$$' \
+                             | grep -v '^bin/R.gnome\**$$'`; do \
 -	  $(INSTALL) $${f} $(rhome)/bin; \
 +	  $(INSTALL_SCRIPT) $${f} $(rhome)/bin; \
  	done
diff --git a/math/R/patches/patch-af b/math/R/patches/patch-af
index 6b3b784ead3..9c029334f2c 100644
--- a/math/R/patches/patch-af
+++ b/math/R/patches/patch-af
@@ -1,22 +1,21 @@
-$NetBSD: patch-af,v 1.2 1999/08/26 23:52:22 jlam Exp $
+$NetBSD: patch-af,v 1.3 2000/01/12 22:05:33 rh Exp $
 
---- src/scripts/R.sh.in.orig	Wed May 12 03:12:32 1999
-+++ src/scripts/R.sh.in	Thu Aug 26 18:44:22 1999
-@@ -47,7 +47,7 @@
- 	echo "*** (maybe use \`run ${args}'  from *inside* ${deb}"
- 	echo ""
-       fi
--      exec ${deb} ${RHOME}/bin/${R_BINARY} ;;
-+      exec ${deb} @prefix@/bin/${R_BINARY} ;;
-     --no-environ)
-       USE_R_ENVIRON=false ;;
-     --vanilla)
-@@ -107,7 +107,7 @@
- if ${USE_R_ENVIRON}; then
-   [ -r ${HOME}/.Renviron ] && . ${HOME}/.Renviron
+--- src/scripts/R.sh.in.orig	Wed Jan 12 20:12:45 2000
++++ src/scripts/R.sh.in	Wed Jan 12 20:15:02 2000
+@@ -114,14 +114,14 @@
+ fi
+ 
+ if test -z "${DBG}"; then
+-  exec ${R_HOME}/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS}
++  exec @prefix@/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS}
+ else
+   if test -n "${ARGS}"; then
+     echo "*** Further command line arguments (\`${ARGS}') disregarded"
+     echo "*** (maybe use \`run ${ARGS}' from *inside* ${DBG})"
+     echo ""
+   fi
+-  exec ${DBG} ${R_HOME}/bin/${R_BINARY}
++  exec ${DBG} @prefix@/bin/${R_BINARY}
  fi
--exec ${RHOME}/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS}
-+exec @prefix@/bin/${R_BINARY} @R_BATCHSAVE@ ${ARGS}
  
  ### Local Variables: ***
- ### mode: sh ***
diff --git a/math/R/patches/patch-ag b/math/R/patches/patch-ag
index ad2e98a3e17..b497b64ddbd 100644
--- a/math/R/patches/patch-ag
+++ b/math/R/patches/patch-ag
@@ -1,17 +1,17 @@
-$NetBSD: patch-ag,v 1.1 1999/05/25 23:51:12 jlam Exp $
+$NetBSD: patch-ag,v 1.2 2000/01/12 22:05:33 rh Exp $
 
---- src/scripts/Makefile.in.orig	Fri Mar  5 11:19:10 1999
-+++ src/scripts/Makefile.in	Tue May 25 02:39:25 1999
-@@ -26,10 +26,10 @@
- 	  (cd $(top_builddir); sed "s@RHOME=.*@RHOME=`pwd`@" > bin/R)
+--- src/scripts/Makefile.in.orig	Wed Jan 12 20:16:55 2000
++++ src/scripts/Makefile.in	Wed Jan 12 20:17:56 2000
+@@ -38,10 +38,10 @@
+ 	  > $(top_builddir)/bin/R
  	@chmod +x $(top_builddir)/bin/R
- 	@for f in $(SRC_SCRIPTS); do \
+ 	@for f in $(SCRIPTS_S); do \
 -	  $(INSTALL) $(srcdir)/$$f $(top_builddir)/bin; \
 +	  $(INSTALL_SCRIPT) $(srcdir)/$$f $(top_builddir)/bin; \
  	done
- 	@for f in $(OBJ_SCRIPTS); do \
+ 	@for f in $(SCRIPTS_B); do \
 -	  $(INSTALL) $$f $(top_builddir)/bin; \
 +	  $(INSTALL_SCRIPT) $$f $(top_builddir)/bin; \
  	done
  
- mostlyclean: clean
+ $(SCRIPTS_B): $(top_builddir)/config.status
diff --git a/math/R/pkg/PLIST b/math/R/pkg/PLIST
index d7361e77c9b..06bc66db66a 100644
--- a/math/R/pkg/PLIST
+++ b/math/R/pkg/PLIST
@@ -1,56 +1,19 @@
-@comment $NetBSD: PLIST,v 1.4 1999/08/26 23:52:22 jlam Exp $
+@comment $NetBSD: PLIST,v 1.5 2000/01/12 22:05:33 rh Exp $
 bin/R
-bin/R.binary
+bin/R.X11
 bin/Rd2txt
 bin/Rdconv
 bin/Rdindex
 bin/Sd2Rd
 man/man1/R.1
-man/man1/Rd2txt.1
 man/man1/Rdconv.1
-man/man1/Rdindex.1
+man/man1/Rd2txt.1
 man/man1/Sd2Rd.1
-share/R/COPYING
-share/R/COPYRIGHTS
-share/R/MIRROR-SITES
-share/R/RESOURCES
-share/R/afm/agd_____.lt1
-share/R/afm/agdo____.lt1
-share/R/afm/agw_____.lt1
-share/R/afm/agwo____.lt1
-share/R/afm/bkd_____.lt1
-share/R/afm/bkdi____.lt1
-share/R/afm/bkl_____.lt1
-share/R/afm/bkli____.lt1
-share/R/afm/cob_____.lt1
-share/R/afm/cobo____.lt1
-share/R/afm/com_____.lt1
-share/R/afm/coo_____.lt1
-share/R/afm/hv______.lt1
-share/R/afm/hvb_____.lt1
-share/R/afm/hvbo____.lt1
-share/R/afm/hvn_____.lt1
-share/R/afm/hvnb____.lt1
-share/R/afm/hvnbo___.lt1
-share/R/afm/hvno____.lt1
-share/R/afm/hvo_____.lt1
-share/R/afm/ncb_____.lt1
-share/R/afm/ncbi____.lt1
-share/R/afm/nci_____.lt1
-share/R/afm/ncr_____.lt1
-share/R/afm/pob_____.lt1
-share/R/afm/pobi____.lt1
-share/R/afm/poi_____.lt1
-share/R/afm/por_____.lt1
-share/R/afm/sy______.afm
-share/R/afm/tib_____.lt1
-share/R/afm/tibi____.lt1
-share/R/afm/tii_____.lt1
-share/R/afm/tir_____.lt1
+man/man1/Rdindex.1
+share/R/bin/R
 share/R/bin/BATCH
 share/R/bin/COMPILE
 share/R/bin/INSTALL
-share/R/bin/R
 share/R/bin/REMOVE
 share/R/bin/Rd2contents
 share/R/bin/Rd2dvi
@@ -70,55 +33,6 @@ share/R/bin/help.pretty
 share/R/bin/html2dos
 share/R/bin/massage-Examples
 share/R/bin/pager
-share/R/demos/dynload/Makefile
-share/R/demos/dynload/README
-share/R/demos/dynload/zero.R
-share/R/demos/dynload/zero.c
-share/R/demos/graphics/graphics.R
-share/R/demos/graphics/image.R
-share/R/demos/language/is-things.R
-share/R/demos/language/recursion.R
-share/R/demos/language/scoping.R
-share/R/demos/models/glm-v+r.R
-share/R/demos/models/lm+glm.R
-share/R/demos/nlm/valley.R
-share/R/doc/KEYWORDS
-share/R/doc/html/about.html
-share/R/doc/html/authors.html
-share/R/doc/html/function.html
-share/R/doc/html/index.html
-share/R/doc/html/left.jpg
-share/R/doc/html/logo.jpg
-share/R/doc/html/logosm.jpg
-share/R/doc/html/packages-foot.html
-share/R/doc/html/packages-head.html
-share/R/doc/html/packages.html
-share/R/doc/html/resource.html
-share/R/doc/html/right.jpg
-share/R/doc/html/search/IndexEntry.class
-share/R/doc/html/search/IndexStream.class
-share/R/doc/html/search/IndexTable.class
-share/R/doc/html/search/SearchEngine.class
-share/R/doc/html/search/SearchEngine.html
-share/R/doc/html/search/Tracer.class
-share/R/doc/html/search/Value.class
-share/R/doc/html/search/index.txt
-share/R/doc/html/template.html
-share/R/doc/html/thanks.html
-share/R/doc/html/up.jpg
-share/R/doc/keyword-test
-share/R/doc/manual/Manual.tex
-share/R/doc/manual/Rd.sty
-share/R/doc/manual/Rd2dvi.tex
-share/R/doc/manual/Reference.tex
-share/R/doc/manual/plotmath.tex
-share/R/doc/manual/primitive-funs.tex
-share/R/doc/manual/programming.tex
-share/R/doc/manual/writing-Rd.tex
-share/R/etc/Makeconf
-share/R/etc/Rdconvlib.pl
-share/R/etc/buildlib.pl
-share/R/etc/html-layout.pl
 share/R/include/Applic.h
 share/R/include/Arith.h
 share/R/include/Blas.h
@@ -129,18 +43,311 @@ share/R/include/Fortran.h
 share/R/include/Linpack.h
 share/R/include/Mathlib.h
 share/R/include/Memory.h
-share/R/include/Platform.h
 share/R/include/PrtUtil.h
 share/R/include/Random.h
+share/R/include/Rconfig.h
+share/R/include/Rdefines.h
 share/R/include/Rinternals.h
+share/R/include/Rversion.h
 share/R/include/S.h
 share/R/include/S_compat.h
 share/R/include/Utils.h
 share/R/include/f2c.h
-share/R/library/LibIndex
-share/R/library/base/CONTENTS
-share/R/library/base/INDEX
-share/R/library/base/R-ex/Arithmetic.R
+share/R/library/nls/help/sortedXyData
+share/R/library/nls/help/00Titles
+share/R/library/nls/help/BOD
+share/R/library/nls/help/NLSstAsymptotic
+share/R/library/nls/help/NLSstClosestX
+share/R/library/nls/help/NLSstLfAsymptote
+share/R/library/nls/help/NLSstRtAsymptote
+share/R/library/nls/help/SSasymp
+share/R/library/nls/help/SSasympOff
+share/R/library/nls/help/SSasympOrig
+share/R/library/nls/help/SSbiexp
+share/R/library/nls/help/SSfol
+share/R/library/nls/help/SSfpl
+share/R/library/nls/help/SSlogis
+share/R/library/nls/help/SSmicmen
+share/R/library/nls/help/asOneSidedFormula
+share/R/library/nls/help/clearNames
+share/R/library/nls/help/formula.nls
+share/R/library/nls/help/getInitial
+share/R/library/nls/help/logLik
+share/R/library/nls/help/nls
+share/R/library/nls/help/nls.control
+share/R/library/nls/help/nlsModel
+share/R/library/nls/help/plot.profile.nls
+share/R/library/nls/help/predict.nls
+share/R/library/nls/help/profile.nls
+share/R/library/nls/help/profiler
+share/R/library/nls/help/profiler.nls
+share/R/library/nls/help/selfStart
+share/R/library/nls/help/selfStart.default
+share/R/library/nls/help/selfStart.formula
+share/R/library/nls/help/setNames
+share/R/library/nls/help/AnIndex
+share/R/library/nls/R-ex/sortedXyData.R
+share/R/library/nls/R-ex/NLSstAsymptotic.R
+share/R/library/nls/R-ex/NLSstClosestX.R
+share/R/library/nls/R-ex/NLSstLfAsymptote.R
+share/R/library/nls/R-ex/NLSstRtAsymptote.R
+share/R/library/nls/R-ex/SSasymp.R
+share/R/library/nls/R-ex/SSasympOff.R
+share/R/library/nls/R-ex/SSasympOrig.R
+share/R/library/nls/R-ex/SSbiexp.R
+share/R/library/nls/R-ex/SSfol.R
+share/R/library/nls/R-ex/SSfpl.R
+share/R/library/nls/R-ex/SSlogis.R
+share/R/library/nls/R-ex/SSmicmen.R
+share/R/library/nls/R-ex/asOneSidedFormula.R
+share/R/library/nls/R-ex/clearNames.R
+share/R/library/nls/R-ex/formula.nls.R
+share/R/library/nls/R-ex/getInitial.R
+share/R/library/nls/R-ex/logLik.R
+share/R/library/nls/R-ex/nls.R
+share/R/library/nls/R-ex/nls.control.R
+share/R/library/nls/R-ex/nlsModel.R
+share/R/library/nls/R-ex/BOD.R
+share/R/library/nls/R-ex/predict.nls.R
+share/R/library/nls/R-ex/plot.profile.nls.R
+share/R/library/nls/R-ex/profile.nls.R
+share/R/library/nls/R-ex/profiler.R
+share/R/library/nls/R-ex/profiler.nls.R
+share/R/library/nls/R-ex/selfStart.R
+share/R/library/nls/R-ex/selfStart.default.R
+share/R/library/nls/R-ex/selfStart.formula.R
+share/R/library/nls/R-ex/setNames.R
+share/R/library/nls/latex/sortedXyData.tex
+share/R/library/nls/latex/NLSstAsymptotic.tex
+share/R/library/nls/latex/NLSstClosestX.tex
+share/R/library/nls/latex/NLSstLfAsymptote.tex
+share/R/library/nls/latex/NLSstRtAsymptote.tex
+share/R/library/nls/latex/SSasymp.tex
+share/R/library/nls/latex/SSasympOff.tex
+share/R/library/nls/latex/SSasympOrig.tex
+share/R/library/nls/latex/SSbiexp.tex
+share/R/library/nls/latex/SSfol.tex
+share/R/library/nls/latex/SSfpl.tex
+share/R/library/nls/latex/SSlogis.tex
+share/R/library/nls/latex/SSmicmen.tex
+share/R/library/nls/latex/asOneSidedFormula.tex
+share/R/library/nls/latex/clearNames.tex
+share/R/library/nls/latex/formula.nls.tex
+share/R/library/nls/latex/getInitial.tex
+share/R/library/nls/latex/logLik.tex
+share/R/library/nls/latex/nls.tex
+share/R/library/nls/latex/nls.control.tex
+share/R/library/nls/latex/nlsModel.tex
+share/R/library/nls/latex/plot.profile.nls.tex
+share/R/library/nls/latex/predict.nls.tex
+share/R/library/nls/latex/profile.nls.tex
+share/R/library/nls/latex/profiler.tex
+share/R/library/nls/latex/profiler.nls.tex
+share/R/library/nls/latex/selfStart.tex
+share/R/library/nls/latex/selfStart.default.tex
+share/R/library/nls/latex/selfStart.formula.tex
+share/R/library/nls/latex/setNames.tex
+share/R/library/nls/latex/BOD.tex
+share/R/library/nls/html/sortedXyData.html
+share/R/library/nls/html/BOD.html
+share/R/library/nls/html/NLSstAsymptotic.html
+share/R/library/nls/html/NLSstClosestX.html
+share/R/library/nls/html/NLSstLfAsymptote.html
+share/R/library/nls/html/NLSstRtAsymptote.html
+share/R/library/nls/html/SSasymp.html
+share/R/library/nls/html/SSasympOff.html
+share/R/library/nls/html/SSasympOrig.html
+share/R/library/nls/html/SSbiexp.html
+share/R/library/nls/html/SSfol.html
+share/R/library/nls/html/SSfpl.html
+share/R/library/nls/html/SSlogis.html
+share/R/library/nls/html/SSmicmen.html
+share/R/library/nls/html/asOneSidedFormula.html
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 share/R/library/base/help/ls.print
 share/R/library/base/help/lsfit
 share/R/library/base/help/machine
-share/R/library/base/help/macintosh
 share/R/library/base/help/mad
 share/R/library/base/help/mahalanobis
 share/R/library/base/help/make.link
@@ -867,6 +2185,7 @@ share/R/library/base/help/matplot
 share/R/library/base/help/matrix
 share/R/library/base/help/mean
 share/R/library/base/help/median
+share/R/library/base/help/memory.profile
 share/R/library/base/help/menu
 share/R/library/base/help/methods
 share/R/library/base/help/missing
@@ -875,6 +2194,7 @@ share/R/library/base/help/model.extract
 share/R/library/base/help/model.frame
 share/R/library/base/help/model.matrix
 share/R/library/base/help/model.tables
+share/R/library/base/help/nlm
 share/R/library/base/help/mosaicplot
 share/R/library/base/help/mtcars
 share/R/library/base/help/mtext
@@ -887,7 +2207,6 @@ share/R/library/base/help/nchar
 share/R/library/base/help/nextn
 share/R/library/base/help/nhtemp
 share/R/library/base/help/nlevels
-share/R/library/base/help/nlm
 share/R/library/base/help/noquote
 share/R/library/base/help/notyet
 share/R/library/base/help/nrow
@@ -898,6 +2217,7 @@ share/R/library/base/help/optimize
 share/R/library/base/help/options
 share/R/library/base/help/order
 share/R/library/base/help/outer
+share/R/library/base/help/package.contents
 share/R/library/base/help/page
 share/R/library/base/help/pairs
 share/R/library/base/help/pairs.formula
@@ -906,19 +2226,20 @@ share/R/library/base/help/palettes
 share/R/library/base/help/panel.smooth
 share/R/library/base/help/par
 share/R/library/base/help/parse
+share/R/library/base/help/parse.dcf
 share/R/library/base/help/paste
 share/R/library/base/help/persp
 share/R/library/base/help/phones
 share/R/library/base/help/pictex
 share/R/library/base/help/piechart
-share/R/library/base/help/pigs
-share/R/library/base/help/plants
 share/R/library/base/help/plot
+share/R/library/base/help/plot.lm
 share/R/library/base/help/plot.window
 share/R/library/base/help/plot.xy
 share/R/library/base/help/plotdefault
 share/R/library/base/help/plotfactor
 share/R/library/base/help/plotformula
+share/R/library/base/help/plotmath
 share/R/library/base/help/pmatch
 share/R/library/base/help/points
 share/R/library/base/help/poly
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 share/R/library/base/help/predict
 share/R/library/base/help/predict.glm
 share/R/library/base/help/predict.lm
+share/R/library/base/help/preplot
 share/R/library/base/help/presidents
 share/R/library/base/help/pressure
 share/R/library/base/help/pretty
@@ -940,8 +2262,10 @@ share/R/library/base/help/print.default
 share/R/library/base/help/print.matrix
 share/R/library/base/help/proc.time
 share/R/library/base/help/prod
+share/R/library/base/help/profile
 share/R/library/base/help/proj
 share/R/library/base/help/prompt
+share/R/library/base/help/prompt.data.frame
 share/R/library/base/help/prop.test
 share/R/library/base/help/qqnorm
 share/R/library/base/help/qr
@@ -951,10 +2275,12 @@ share/R/library/base/help/quantile
 share/R/library/base/help/quit
 share/R/library/base/help/randu
 share/R/library/base/help/range
+share/R/library/base/help/range.default
 share/R/library/base/help/rank
 share/R/library/base/help/read.fwf
 share/R/library/base/help/read.socket
 share/R/library/base/help/read.table
+share/R/library/base/help/read.table.url
 share/R/library/base/help/readline
 share/R/library/base/help/real
 share/R/library/base/help/rect
@@ -963,6 +2289,7 @@ share/R/library/base/help/rep
 share/R/library/base/help/replace
 share/R/library/base/help/replications
 share/R/library/base/help/residuals
+share/R/library/base/help/restart
 share/R/library/base/help/rev
 share/R/library/base/help/rgb
 share/R/library/base/help/rivers
@@ -973,15 +2300,17 @@ share/R/library/base/help/rowsum
 share/R/library/base/help/rug
 share/R/library/base/help/sample
 share/R/library/base/help/save
-share/R/library/base/help/savings
 share/R/library/base/help/scale
 share/R/library/base/help/scan
 share/R/library/base/help/screen
 share/R/library/base/help/sd
+share/R/library/base/help/se.aov
 share/R/library/base/help/se.contrast
 share/R/library/base/help/search
+share/R/library/base/help/segments
 share/R/library/base/help/seq
 share/R/library/base/help/sequence
+share/R/library/base/help/sets
 share/R/library/base/help/sign
 share/R/library/base/help/sink
 share/R/library/base/help/sleep
@@ -991,6 +2320,8 @@ share/R/library/base/help/source
 share/R/library/base/help/splinefun
 share/R/library/base/help/split
 share/R/library/base/help/stackloss
+share/R/library/base/help/stars
+share/R/library/base/help/start
 share/R/library/base/help/stat.anova
 share/R/library/base/help/state
 share/R/library/base/help/stem
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 share/R/library/base/help/substr
 share/R/library/base/help/sum
 share/R/library/base/help/summary
+share/R/library/base/help/sunflowerplot
 share/R/library/base/help/sunspots
 share/R/library/base/help/svd
 share/R/library/base/help/sweep
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 share/R/library/base/help/transform
 share/R/library/base/help/trees
 share/R/library/base/help/ts
+share/R/library/base/help/tsp
 share/R/library/base/help/typeof
 share/R/library/base/help/unique
 share/R/library/base/help/uniroot
 share/R/library/base/help/units
 share/R/library/base/help/unlink
 share/R/library/base/help/unlist
+share/R/library/base/help/unname
 share/R/library/base/help/update
-share/R/library/base/help/update.formula
-share/R/library/base/help/update.lm
 share/R/library/base/help/uspop
+share/R/library/base/help/update.formula
+share/R/library/base/help/update.packages
 share/R/library/base/help/var
 share/R/library/base/help/vector
 share/R/library/base/help/volcano
 share/R/library/base/help/warning
+share/R/library/base/help/warnings
 share/R/library/base/help/warpbreaks
 share/R/library/base/help/weighted.mean
+share/R/library/base/help/weighted.residuals
 share/R/library/base/help/which
 share/R/library/base/help/window
 share/R/library/base/help/women
 share/R/library/base/help/write
 share/R/library/base/help/write.table
-share/R/library/base/help/x11
 share/R/library/base/help/xy.coords
 share/R/library/base/help/zAlias
 share/R/library/base/help/zC
 share/R/library/base/help/zMachine
 share/R/library/base/help/zMethods
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-share/R/library/base/html/Arithmetic.html
-share/R/library/base/html/BATCH.html
-share/R/library/base/html/Bessel.html
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-share/R/library/base/html/Binomial.html
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