math/py-numpy: Update to 1.16.5

Changes:

- Add project URLs to setup.py
- fix tests and ctypes code for PyPy
- use npy_intp instead of int for indexing array
- Ignore DeprecationWarning during nose imports
- Fix use-after-free in boolean indexing
- Fix errors in _add_newdocs
- fix byte order reversal for datetime64[ns]
- Use nbytes to also catch empty descr during allocation
- np.array cleared errors occured in PyMemoryView_FromObject
- Fixes for Undefined Behavior Sanitizer (UBSan) errors.
- ensure that casting to/from structured is properly checked.
- fix histogram*d dispatchers
- further fixup to histogram2d dispatcher.
- Replace contextlib.suppress for Python 2.7
- fix compilation of 3rd party modules with Py_LIMITED_API...
- Fix memory leak in dtype from dict contructor
- Document array_function at a higher level.
- add new recfunctions to __all__
- Remove stray print that causes a SystemError on python 3.7
- Pin pytest version to 5.0.1.
- Enable huge pages in all Linux builds
- fix behavior of structured_to_unstructured

3 files changed, 12 insertions, 8 deletions

diff --git a/math/py-numpy/Makefile b/math/py-numpy/Makefile
index 4cf22a04b45..3183da566d5 100644
--- a/math/py-numpy/Makefile
+++ b/math/py-numpy/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.61 2019/06/14 14:33:07 adam Exp $
+# $NetBSD: Makefile,v 1.62 2020/01/24 16:18:22 minskim Exp $
 
-DISTNAME=	numpy-1.16.4
+DISTNAME=	numpy-1.16.5
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=n/numpy/}
@@ -48,6 +48,7 @@ do-test:
 	cd ${WRKDIR} && \
 	${RUN} PYTHONPATH=${DESTDIR}${PREFIX}/${PYSITELIB} ${PYTHONBIN} -c "import numpy; numpy.test()"
 
+BUILDLINK_API_DEPENDS.py-cython+=	${PYPKGPREFIX}-cython>=0.29.2
 .include "../../devel/py-cython/buildlink3.mk"
 .include "../../lang/python/application.mk"
 .include "../../lang/python/egg.mk"
diff --git a/math/py-numpy/PLIST b/math/py-numpy/PLIST
index c68df64c155..f0ff3f27446 100644
--- a/math/py-numpy/PLIST
+++ b/math/py-numpy/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.26 2019/03/04 09:09:46 adam Exp $
+@comment $NetBSD: PLIST,v 1.27 2020/01/24 16:18:22 minskim Exp $
 bin/f2py${PYVERSSUFFIX}
 ${PLIST.py2x}bin/f2py2
 ${PLIST.py3x}bin/f2py3
@@ -428,6 +428,9 @@ ${PYSITELIB}/numpy/doc/constants.pyo
 ${PYSITELIB}/numpy/doc/creation.py
 ${PYSITELIB}/numpy/doc/creation.pyc
 ${PYSITELIB}/numpy/doc/creation.pyo
+${PYSITELIB}/numpy/doc/dispatch.py
+${PYSITELIB}/numpy/doc/dispatch.pyc
+${PYSITELIB}/numpy/doc/dispatch.pyo
 ${PYSITELIB}/numpy/doc/glossary.py
 ${PYSITELIB}/numpy/doc/glossary.pyc
 ${PYSITELIB}/numpy/doc/glossary.pyo
diff --git a/math/py-numpy/distinfo b/math/py-numpy/distinfo
index 24725b89bd4..6a40002f462 100644
--- a/math/py-numpy/distinfo
+++ b/math/py-numpy/distinfo
@@ -1,9 +1,9 @@
-$NetBSD: distinfo,v 1.44 2019/06/14 14:33:07 adam Exp $
+$NetBSD: distinfo,v 1.45 2020/01/24 16:18:22 minskim Exp $
 
-SHA1 (numpy-1.16.4.zip) = 153d74c1cecd247edf517f8e481c567fa083fa18
-RMD160 (numpy-1.16.4.zip) = 6af02f6924c58515c8890dd88909f76e4e815c6e
-SHA512 (numpy-1.16.4.zip) = 5b2848ef38d79a9d416425a22602dd45aa665df996908015f32fb7477e37aa5968009cb27b3e1bdcf24ce7c0c39bafa3ff380cb45a766c1f530483f88921df21
-Size (numpy-1.16.4.zip) = 5122740 bytes
+SHA1 (numpy-1.16.5.zip) = fabf1564bd4e77ff04ad52746eacfdf6c7fa51f2
+RMD160 (numpy-1.16.5.zip) = 090ecd6be112178155cd011ee57e65088211d7ef
+SHA512 (numpy-1.16.5.zip) = 6dd790ff57fdb7e7b0bddb47ea2b70b2667edefe632548ec68934e12a16af4a51bed9726e495c4993aad4c448dc4a204d0a087577d43dcfc9fa0164eb1d4b898
+Size (numpy-1.16.5.zip) = 5138208 bytes
 SHA1 (patch-numpy_distutils_fcompiler_____init____.py) = 49d070da5b48bd9818b37ac3254341fa68503c53
 SHA1 (patch-numpy_distutils_fcompiler_g95.py) = be73b64a3e551df998b6a904d6db762bf28a98ed
 SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = db8d3238c618ecd5900650a2150efb9459e94e96