Update py-pytables to 2.4.0.

Major changes in 2.4:
- Improved HDF5 error logging management.
- Added support for the float16 data type.
- Leaf nodes now have attributes for retrieving the size of data in memory
  and on disk.
- Configurable maximum number of threads for Blosc and Numexpr.
- ndim (read-only) attribute added to Leaf, Atom and Col objects.
- Added read support for variable length string attributes.

Full changelog for 2.4.0, see:

  http://pytables.github.io/release-notes/RELEASE_NOTES_v2.4.x.html

Major changes in 2.3:

- Integrated functionality from PyTablesPro (re-licensed under a BSD license).
- OPSI is a powerful and innovative indexing engine allowing PyTables
  to perform fast queries on arbitrarily large tables.
- A fine-tuned LRU cache for both metadata (nodes) and regular data.

Full changelog for 2.3.x, see:

  http://pytables.github.io/release-notes/RELEASE_NOTES_v2.3.x.html

4 files changed, 38 insertions, 26 deletions

diff --git a/math/py-pytables/Makefile b/math/py-pytables/Makefile
index 7adf3739a72..f7ad0e44094 100644
--- a/math/py-pytables/Makefile
+++ b/math/py-pytables/Makefile
@@ -1,15 +1,15 @@
-# $NetBSD: Makefile,v 1.26 2012/10/03 22:14:02 wiz Exp $
+# $NetBSD: Makefile,v 1.27 2013/05/14 09:57:58 fhajny Exp $
 #
 
-DISTNAME=		tables-2.2.1
-PKGNAME=		${PYPKGPREFIX}-pytables-2.2.1
-PKGREVISION=		1
+DISTNAME=		tables-2.4.0
+PKGNAME=		${PYPKGPREFIX}-py${DISTNAME}
 CATEGORIES=		math python
-MASTER_SITES=		http://www.pytables.org/download/pytables-2.2.1/
+MASTER_SITES=		${MASTER_SITE_SOURCEFORGE:=pytables/}
 
 MAINTAINER=		pkgsrc-users@NetBSD.org
 HOMEPAGE=		http://www.pytables.org/
 COMMENT=		Database package for large amounts of data
+LICENSE=		modified-bsd
 
 PKG_OPTIONS_VAR=	PKG_OPTIONS.pytables
 PKG_SUPPORTED_OPTIONS=	lzo
diff --git a/math/py-pytables/PLIST b/math/py-pytables/PLIST
index c91c14a9797..a9afb09a139 100644
--- a/math/py-pytables/PLIST
+++ b/math/py-pytables/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.9 2010/11/24 18:06:01 drochner Exp $
+@comment $NetBSD: PLIST,v 1.10 2013/05/14 09:57:58 fhajny Exp $
 bin/nctoh5${PYVERSSUFFIX}
 bin/ptdump${PYVERSSUFFIX}
 bin/ptrepack${PYVERSSUFFIX}
@@ -7,15 +7,6 @@ ${PYSITELIB}/tables/__init__.pyc
 ${PYSITELIB}/tables/__init__.pyo
 ${PYSITELIB}/tables/_comp_bzip2.so
 ${PYSITELIB}/tables/_comp_lzo.so
-${PYSITELIB}/tables/_conditions_common.py
-${PYSITELIB}/tables/_conditions_common.pyc
-${PYSITELIB}/tables/_conditions_common.pyo
-${PYSITELIB}/tables/_parameters_common.py
-${PYSITELIB}/tables/_parameters_common.pyc
-${PYSITELIB}/tables/_parameters_common.pyo
-${PYSITELIB}/tables/_table_common.py
-${PYSITELIB}/tables/_table_common.pyc
-${PYSITELIB}/tables/_table_common.pyo
 ${PYSITELIB}/tables/array.py
 ${PYSITELIB}/tables/array.pyc
 ${PYSITELIB}/tables/array.pyo
@@ -56,6 +47,16 @@ ${PYSITELIB}/tables/group.py
 ${PYSITELIB}/tables/group.pyc
 ${PYSITELIB}/tables/group.pyo
 ${PYSITELIB}/tables/hdf5Extension.so
+${PYSITELIB}/tables/idxutils.py
+${PYSITELIB}/tables/idxutils.pyc
+${PYSITELIB}/tables/idxutils.pyo
+${PYSITELIB}/tables/index.py
+${PYSITELIB}/tables/index.pyc
+${PYSITELIB}/tables/index.pyo
+${PYSITELIB}/tables/indexes.py
+${PYSITELIB}/tables/indexes.pyc
+${PYSITELIB}/tables/indexes.pyo
+${PYSITELIB}/tables/indexesExtension.so
 ${PYSITELIB}/tables/leaf.py
 ${PYSITELIB}/tables/leaf.pyc
 ${PYSITELIB}/tables/leaf.pyo
@@ -63,15 +64,13 @@ ${PYSITELIB}/tables/link.py
 ${PYSITELIB}/tables/link.pyc
 ${PYSITELIB}/tables/link.pyo
 ${PYSITELIB}/tables/linkExtension.so
+${PYSITELIB}/tables/lrucacheExtension.so
 ${PYSITELIB}/tables/misc/__init__.py
 ${PYSITELIB}/tables/misc/__init__.pyc
 ${PYSITELIB}/tables/misc/__init__.pyo
 ${PYSITELIB}/tables/misc/enum.py
 ${PYSITELIB}/tables/misc/enum.pyc
 ${PYSITELIB}/tables/misc/enum.pyo
-${PYSITELIB}/tables/misc/lrucache.py
-${PYSITELIB}/tables/misc/lrucache.pyc
-${PYSITELIB}/tables/misc/lrucache.pyo
 ${PYSITELIB}/tables/misc/proxydict.py
 ${PYSITELIB}/tables/misc/proxydict.pyc
 ${PYSITELIB}/tables/misc/proxydict.pyo
@@ -171,14 +170,20 @@ ${PYSITELIB}/tables/tests/check_leaks.pyo
 ${PYSITELIB}/tables/tests/common.py
 ${PYSITELIB}/tables/tests/common.pyc
 ${PYSITELIB}/tables/tests/common.pyo
+${PYSITELIB}/tables/tests/create_backcompat_indexes.py
+${PYSITELIB}/tables/tests/create_backcompat_indexes.pyc
+${PYSITELIB}/tables/tests/create_backcompat_indexes.pyo
 ${PYSITELIB}/tables/tests/elink.h5
 ${PYSITELIB}/tables/tests/elink2.h5
 ${PYSITELIB}/tables/tests/ex-noattr.h5
 ${PYSITELIB}/tables/tests/flavored_vlarrays-format1.6.h5
+${PYSITELIB}/tables/tests/float.h5
 ${PYSITELIB}/tables/tests/idx-std-1.x.h5
 ${PYSITELIB}/tables/tests/indexes_2_0.h5
+${PYSITELIB}/tables/tests/indexes_2_1.h5
 ${PYSITELIB}/tables/tests/nested-type-with-gaps.h5
 ${PYSITELIB}/tables/tests/non-chunked-table.h5
+${PYSITELIB}/tables/tests/scalar.h5
 ${PYSITELIB}/tables/tests/slink.h5
 ${PYSITELIB}/tables/tests/smpl_SDSextendible.h5
 ${PYSITELIB}/tables/tests/smpl_compound_chunked.h5
@@ -235,6 +240,12 @@ ${PYSITELIB}/tables/tests/test_hdf5compat.pyo
 ${PYSITELIB}/tables/tests/test_index_backcompat.py
 ${PYSITELIB}/tables/tests/test_index_backcompat.pyc
 ${PYSITELIB}/tables/tests/test_index_backcompat.pyo
+${PYSITELIB}/tables/tests/test_indexes.py
+${PYSITELIB}/tables/tests/test_indexes.pyc
+${PYSITELIB}/tables/tests/test_indexes.pyo
+${PYSITELIB}/tables/tests/test_indexvalues.py
+${PYSITELIB}/tables/tests/test_indexvalues.pyc
+${PYSITELIB}/tables/tests/test_indexvalues.pyo
 ${PYSITELIB}/tables/tests/test_links.py
 ${PYSITELIB}/tables/tests/test_links.pyc
 ${PYSITELIB}/tables/tests/test_links.pyo
@@ -274,6 +285,7 @@ ${PYSITELIB}/tables/tests/test_vlarray.pyc
 ${PYSITELIB}/tables/tests/test_vlarray.pyo
 ${PYSITELIB}/tables/tests/time-table-vlarray-1_x.h5
 ${PYSITELIB}/tables/tests/times-nested-be.h5
+${PYSITELIB}/tables/tests/vlstr_attr.h5
 ${PYSITELIB}/tables/tests/vlunicode_endian.h5
 ${PYSITELIB}/tables/tests/zerodim-attrs-1.3.h5
 ${PYSITELIB}/tables/tests/zerodim-attrs-1.4.h5
diff --git a/math/py-pytables/distinfo b/math/py-pytables/distinfo
index fb76b7831cc..357638a3a97 100644
--- a/math/py-pytables/distinfo
+++ b/math/py-pytables/distinfo
@@ -1,7 +1,7 @@
-$NetBSD: distinfo,v 1.9 2010/11/24 18:06:01 drochner Exp $
+$NetBSD: distinfo,v 1.10 2013/05/14 09:57:58 fhajny Exp $
 
-SHA1 (tables-2.2.1.tar.gz) = 2c6385365be19fdf8f81e8fd862bedfcf4fe2ba5
-RMD160 (tables-2.2.1.tar.gz) = 1d9ab1f836fcccccdad8eee7603a1056c2c27716
-Size (tables-2.2.1.tar.gz) = 4985175 bytes
+SHA1 (tables-2.4.0.tar.gz) = 09374a53bf1cb2162c5224d684455b0f008e67b8
+RMD160 (tables-2.4.0.tar.gz) = 8be57b8dccf97914ca9f71989d400e2691254902
+Size (tables-2.4.0.tar.gz) = 8947848 bytes
 SHA1 (patch-aa) = 8d89466c9fc4df63dd39a3fe2bd3e9f8ac7b45c8
-SHA1 (patch-ab) = 4bae646f86c7cf0e96b143fa09fae8c6e57508a9
+SHA1 (patch-ab) = d392f84969092d542e41e8a91bb21678b8463917
diff --git a/math/py-pytables/patches/patch-ab b/math/py-pytables/patches/patch-ab
index 6b7aa764113..7027498cf20 100644
--- a/math/py-pytables/patches/patch-ab
+++ b/math/py-pytables/patches/patch-ab
@@ -1,14 +1,14 @@
-$NetBSD: patch-ab,v 1.3 2010/11/24 18:06:01 drochner Exp $
+$NetBSD: patch-ab,v 1.4 2013/05/14 09:57:58 fhajny Exp $
 
 avoid use of a rendundant Python-2.6 builtin for compatibility
 
 --- tables/tests/test_basics.py.orig	2010-11-05 09:27:14.000000000 +0000
 +++ tables/tests/test_basics.py
-@@ -2243,7 +2243,7 @@ def _worker(fn, qout = None):
+@@ -2357,7 +2357,7 @@ def _worker(fn, qout = None):
      rows = fp.root.table.where('(f0 < 10)')
      if common.verbose:
          print "Got the iterator, about to iterate"
--    row = next(rows)
+-    next(rows)
 +    row = rows.next()
      if common.verbose:
          print "Succeeded in one iteration\n"