py-scipy: updated to 1.0.0

Some of the highlights of this release are:
* Major build improvements. Windows wheels are available on PyPI for the
  first time, and continuous integration has been set up on Windows and OS X
  in addition to Linux.
* A set of new ODE solvers and a unified interface to them
  (scipy.integrate.solve_ivp).
* Two new trust region optimizers and a new linear programming method, with
  improved performance compared to what scipy.optimize offered previously.
  Many new BLAS and LAPACK functions were wrapped. The BLAS wrappers are now
  complete.

3 files changed, 128 insertions, 36 deletions

diff --git a/math/py-scipy/Makefile b/math/py-scipy/Makefile
index 699d124487a..e29c48ee605 100644
--- a/math/py-scipy/Makefile
+++ b/math/py-scipy/Makefile
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.28 2017/09/28 13:49:19 wiz Exp $
+# $NetBSD: Makefile,v 1.29 2017/11/02 09:40:29 adam Exp $
 
-DISTNAME=	scipy-0.19.1
+DISTNAME=	scipy-1.0.0
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
-PKGREVISION=	1
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=s/scipy/}
 
diff --git a/math/py-scipy/PLIST b/math/py-scipy/PLIST
index 10f01feaad3..c12a8298a71 100644
--- a/math/py-scipy/PLIST
+++ b/math/py-scipy/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.12 2017/06/24 08:19:40 adam Exp $
+@comment $NetBSD: PLIST,v 1.13 2017/11/02 09:40:29 adam Exp $
 ${PYSITELIB}/${EGG_FILE}/PKG-INFO
 ${PYSITELIB}/${EGG_FILE}/SOURCES.txt
 ${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -20,6 +20,9 @@ ${PYSITELIB}/scipy/_build_utils/__init__.pyo
 ${PYSITELIB}/scipy/_build_utils/_fortran.py
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyc
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyo
+${PYSITELIB}/scipy/_distributor_init.py
+${PYSITELIB}/scipy/_distributor_init.pyc
+${PYSITELIB}/scipy/_distributor_init.pyo
 ${PYSITELIB}/scipy/_lib/__init__.py
 ${PYSITELIB}/scipy/_lib/__init__.pyc
 ${PYSITELIB}/scipy/_lib/__init__.pyo
@@ -27,6 +30,7 @@ ${PYSITELIB}/scipy/_lib/_ccallback.py
 ${PYSITELIB}/scipy/_lib/_ccallback.pyc
 ${PYSITELIB}/scipy/_lib/_ccallback.pyo
 ${PYSITELIB}/scipy/_lib/_ccallback_c.so
+${PYSITELIB}/scipy/_lib/_fpumode.so
 ${PYSITELIB}/scipy/_lib/_gcutils.py
 ${PYSITELIB}/scipy/_lib/_gcutils.pyc
 ${PYSITELIB}/scipy/_lib/_gcutils.pyo
@@ -52,22 +56,27 @@ ${PYSITELIB}/scipy/_lib/_version.pyo
 ${PYSITELIB}/scipy/_lib/decorator.py
 ${PYSITELIB}/scipy/_lib/decorator.pyc
 ${PYSITELIB}/scipy/_lib/decorator.pyo
+${PYSITELIB}/scipy/_lib/messagestream.so
 ${PYSITELIB}/scipy/_lib/setup.py
 ${PYSITELIB}/scipy/_lib/setup.pyc
 ${PYSITELIB}/scipy/_lib/setup.pyo
 ${PYSITELIB}/scipy/_lib/six.py
 ${PYSITELIB}/scipy/_lib/six.pyc
 ${PYSITELIB}/scipy/_lib/six.pyo
+${PYSITELIB}/scipy/_lib/tests/__init__.py
 ${PYSITELIB}/scipy/_lib/tests/test__gcutils.py
+${PYSITELIB}/scipy/_lib/tests/test__testutils.py
 ${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py
 ${PYSITELIB}/scipy/_lib/tests/test__util.py
 ${PYSITELIB}/scipy/_lib/tests/test__version.py
 ${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
 ${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
+${PYSITELIB}/scipy/_lib/tests/test_warnings.py
 ${PYSITELIB}/scipy/cluster/__init__.py
 ${PYSITELIB}/scipy/cluster/__init__.pyc
 ${PYSITELIB}/scipy/cluster/__init__.pyo
 ${PYSITELIB}/scipy/cluster/_hierarchy.so
+${PYSITELIB}/scipy/cluster/_optimal_leaf_ordering.so
 ${PYSITELIB}/scipy/cluster/_vq.so
 ${PYSITELIB}/scipy/cluster/hierarchy.py
 ${PYSITELIB}/scipy/cluster/hierarchy.pyc
@@ -75,12 +84,16 @@ ${PYSITELIB}/scipy/cluster/hierarchy.pyo
 ${PYSITELIB}/scipy/cluster/setup.py
 ${PYSITELIB}/scipy/cluster/setup.pyc
 ${PYSITELIB}/scipy/cluster/setup.pyo
+${PYSITELIB}/scipy/cluster/tests/__init__.py
 ${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py
 ${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py
 ${PYSITELIB}/scipy/cluster/tests/test_vq.py
 ${PYSITELIB}/scipy/cluster/vq.py
 ${PYSITELIB}/scipy/cluster/vq.pyc
 ${PYSITELIB}/scipy/cluster/vq.pyo
+${PYSITELIB}/scipy/conftest.py
+${PYSITELIB}/scipy/conftest.pyc
+${PYSITELIB}/scipy/conftest.pyo
 ${PYSITELIB}/scipy/constants/__init__.py
 ${PYSITELIB}/scipy/constants/__init__.pyc
 ${PYSITELIB}/scipy/constants/__init__.pyo
@@ -93,6 +106,7 @@ ${PYSITELIB}/scipy/constants/constants.pyo
 ${PYSITELIB}/scipy/constants/setup.py
 ${PYSITELIB}/scipy/constants/setup.pyc
 ${PYSITELIB}/scipy/constants/setup.pyo
+${PYSITELIB}/scipy/constants/tests/__init__.py
 ${PYSITELIB}/scipy/constants/tests/test_codata.py
 ${PYSITELIB}/scipy/constants/tests/test_constants.py
 ${PYSITELIB}/scipy/fftpack/__init__.py
@@ -103,9 +117,6 @@ ${PYSITELIB}/scipy/fftpack/basic.py
 ${PYSITELIB}/scipy/fftpack/basic.pyc
 ${PYSITELIB}/scipy/fftpack/basic.pyo
 ${PYSITELIB}/scipy/fftpack/convolve.so
-${PYSITELIB}/scipy/fftpack/fftpack_version.py
-${PYSITELIB}/scipy/fftpack/fftpack_version.pyc
-${PYSITELIB}/scipy/fftpack/fftpack_version.pyo
 ${PYSITELIB}/scipy/fftpack/helper.py
 ${PYSITELIB}/scipy/fftpack/helper.pyc
 ${PYSITELIB}/scipy/fftpack/helper.pyo
@@ -119,6 +130,7 @@ ${PYSITELIB}/scipy/fftpack/setup.py
 ${PYSITELIB}/scipy/fftpack/setup.pyc
 ${PYSITELIB}/scipy/fftpack/setup.pyo
 ${PYSITELIB}/scipy/fftpack/tests/Makefile
+${PYSITELIB}/scipy/fftpack/tests/__init__.py
 ${PYSITELIB}/scipy/fftpack/tests/fftw_dct.c
 ${PYSITELIB}/scipy/fftpack/tests/fftw_double_ref.npz
 ${PYSITELIB}/scipy/fftpack/tests/fftw_single_ref.npz
@@ -138,6 +150,30 @@ ${PYSITELIB}/scipy/integrate/_bvp.py
 ${PYSITELIB}/scipy/integrate/_bvp.pyc
 ${PYSITELIB}/scipy/integrate/_bvp.pyo
 ${PYSITELIB}/scipy/integrate/_dop.so
+${PYSITELIB}/scipy/integrate/_ivp/__init__.py
+${PYSITELIB}/scipy/integrate/_ivp/__init__.pyc
+${PYSITELIB}/scipy/integrate/_ivp/__init__.pyo
+${PYSITELIB}/scipy/integrate/_ivp/base.py
+${PYSITELIB}/scipy/integrate/_ivp/base.pyc
+${PYSITELIB}/scipy/integrate/_ivp/base.pyo
+${PYSITELIB}/scipy/integrate/_ivp/bdf.py
+${PYSITELIB}/scipy/integrate/_ivp/bdf.pyc
+${PYSITELIB}/scipy/integrate/_ivp/bdf.pyo
+${PYSITELIB}/scipy/integrate/_ivp/common.py
+${PYSITELIB}/scipy/integrate/_ivp/common.pyc
+${PYSITELIB}/scipy/integrate/_ivp/common.pyo
+${PYSITELIB}/scipy/integrate/_ivp/ivp.py
+${PYSITELIB}/scipy/integrate/_ivp/ivp.pyc
+${PYSITELIB}/scipy/integrate/_ivp/ivp.pyo
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.py
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.pyc
+${PYSITELIB}/scipy/integrate/_ivp/lsoda.pyo
+${PYSITELIB}/scipy/integrate/_ivp/radau.py
+${PYSITELIB}/scipy/integrate/_ivp/radau.pyc
+${PYSITELIB}/scipy/integrate/_ivp/radau.pyo
+${PYSITELIB}/scipy/integrate/_ivp/rk.py
+${PYSITELIB}/scipy/integrate/_ivp/rk.pyc
+${PYSITELIB}/scipy/integrate/_ivp/rk.pyo
 ${PYSITELIB}/scipy/integrate/_ode.py
 ${PYSITELIB}/scipy/integrate/_ode.pyc
 ${PYSITELIB}/scipy/integrate/_ode.pyo
@@ -158,11 +194,13 @@ ${PYSITELIB}/scipy/integrate/quadrature.pyo
 ${PYSITELIB}/scipy/integrate/setup.py
 ${PYSITELIB}/scipy/integrate/setup.pyc
 ${PYSITELIB}/scipy/integrate/setup.pyo
+${PYSITELIB}/scipy/integrate/tests/__init__.py
 ${PYSITELIB}/scipy/integrate/tests/_test_multivariate.c
 ${PYSITELIB}/scipy/integrate/tests/banded5x5.f
 ${PYSITELIB}/scipy/integrate/tests/test_banded_ode_solvers.py
 ${PYSITELIB}/scipy/integrate/tests/test_bvp.py
 ${PYSITELIB}/scipy/integrate/tests/test_integrate.py
+${PYSITELIB}/scipy/integrate/tests/test_ivp.py
 ${PYSITELIB}/scipy/integrate/tests/test_odeint_jac.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadpack.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadrature.py
@@ -215,6 +253,7 @@ ${PYSITELIB}/scipy/interpolate/rbf.pyo
 ${PYSITELIB}/scipy/interpolate/setup.py
 ${PYSITELIB}/scipy/interpolate/setup.pyc
 ${PYSITELIB}/scipy/interpolate/setup.pyo
+${PYSITELIB}/scipy/interpolate/tests/__init__.py
 ${PYSITELIB}/scipy/interpolate/tests/data/bug-1310.npz
 ${PYSITELIB}/scipy/interpolate/tests/data/estimate_gradients_hang.npy
 ${PYSITELIB}/scipy/interpolate/tests/test_bsplines.py
@@ -235,6 +274,7 @@ ${PYSITELIB}/scipy/io/__init__.pyo
 ${PYSITELIB}/scipy/io/_fortran.py
 ${PYSITELIB}/scipy/io/_fortran.pyc
 ${PYSITELIB}/scipy/io/_fortran.pyo
+${PYSITELIB}/scipy/io/_test_fortran.so
 ${PYSITELIB}/scipy/io/arff/__init__.py
 ${PYSITELIB}/scipy/io/arff/__init__.pyc
 ${PYSITELIB}/scipy/io/arff/__init__.pyo
@@ -244,6 +284,7 @@ ${PYSITELIB}/scipy/io/arff/arffread.pyo
 ${PYSITELIB}/scipy/io/arff/setup.py
 ${PYSITELIB}/scipy/io/arff/setup.pyc
 ${PYSITELIB}/scipy/io/arff/setup.pyo
+${PYSITELIB}/scipy/io/arff/tests/__init__.py
 ${PYSITELIB}/scipy/io/arff/tests/data/iris.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/missing.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/nodata.arff
@@ -268,6 +309,7 @@ ${PYSITELIB}/scipy/io/harwell_boeing/hb.pyo
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.py
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.pyc
 ${PYSITELIB}/scipy/io/harwell_boeing/setup.pyo
+${PYSITELIB}/scipy/io/harwell_boeing/tests/__init__.py
 ${PYSITELIB}/scipy/io/harwell_boeing/tests/test_fortran_format.py
 ${PYSITELIB}/scipy/io/harwell_boeing/tests/test_hb.py
 ${PYSITELIB}/scipy/io/idl.py
@@ -300,6 +342,7 @@ ${PYSITELIB}/scipy/io/matlab/setup.py
 ${PYSITELIB}/scipy/io/matlab/setup.pyc
 ${PYSITELIB}/scipy/io/matlab/setup.pyo
 ${PYSITELIB}/scipy/io/matlab/streams.so
+${PYSITELIB}/scipy/io/matlab/tests/__init__.py
 ${PYSITELIB}/scipy/io/matlab/tests/afunc.m
 ${PYSITELIB}/scipy/io/matlab/tests/data/bad_miuint32.mat
 ${PYSITELIB}/scipy/io/matlab/tests/data/bad_miutf8_array_name.mat
@@ -430,6 +473,7 @@ ${PYSITELIB}/scipy/io/netcdf.pyo
 ${PYSITELIB}/scipy/io/setup.py
 ${PYSITELIB}/scipy/io/setup.pyc
 ${PYSITELIB}/scipy/io/setup.pyo
+${PYSITELIB}/scipy/io/tests/__init__.py
 ${PYSITELIB}/scipy/io/tests/data/array_float32_1d.sav
 ${PYSITELIB}/scipy/io/tests/data/array_float32_2d.sav
 ${PYSITELIB}/scipy/io/tests/data/array_float32_3d.sav
@@ -449,19 +493,20 @@ ${PYSITELIB}/scipy/io/tests/data/array_float32_pointer_8d.sav
 ${PYSITELIB}/scipy/io/tests/data/example_1.nc
 ${PYSITELIB}/scipy/io/tests/data/example_2.nc
 ${PYSITELIB}/scipy/io/tests/data/example_3_maskedvals.nc
+${PYSITELIB}/scipy/io/tests/data/fortran-3x3d-2i.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-mixed.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-10x1x11.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-11x1x10.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-15x10x22.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-22x10x15.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-5x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-5x3x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-sf8-7x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-10x1x11.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x1x7.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-sf8-1x3x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-11x1x10.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-15x10x22.dat
 ${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-22x10x15.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-5x1x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-5x3x1.dat
-${PYSITELIB}/scipy/io/tests/data/fortran-si4-7x1x1.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x5.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x1x7.dat
+${PYSITELIB}/scipy/io/tests/data/fortran-si4-1x3x5.dat
 ${PYSITELIB}/scipy/io/tests/data/invalid_pointer.sav
 ${PYSITELIB}/scipy/io/tests/data/null_pointer.sav
 ${PYSITELIB}/scipy/io/tests/data/scalar_byte.sav
@@ -504,6 +549,7 @@ ${PYSITELIB}/scipy/io/tests/test_fortran.py
 ${PYSITELIB}/scipy/io/tests/test_idl.py
 ${PYSITELIB}/scipy/io/tests/test_mmio.py
 ${PYSITELIB}/scipy/io/tests/test_netcdf.py
+${PYSITELIB}/scipy/io/tests/test_paths.py
 ${PYSITELIB}/scipy/io/tests/test_wavfile.py
 ${PYSITELIB}/scipy/io/wavfile.py
 ${PYSITELIB}/scipy/io/wavfile.pyc
@@ -512,13 +558,9 @@ ${PYSITELIB}/scipy/linalg.pxd
 ${PYSITELIB}/scipy/linalg/__init__.py
 ${PYSITELIB}/scipy/linalg/__init__.pyc
 ${PYSITELIB}/scipy/linalg/__init__.pyo
-${PYSITELIB}/scipy/linalg/_calc_lwork.so
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.py
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyc
 ${PYSITELIB}/scipy/linalg/_cython_signature_generator.pyo
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.py
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.pyc
-${PYSITELIB}/scipy/linalg/_cython_wrapper_generators.pyo
 ${PYSITELIB}/scipy/linalg/_decomp_polar.py
 ${PYSITELIB}/scipy/linalg/_decomp_polar.pyc
 ${PYSITELIB}/scipy/linalg/_decomp_polar.pyo
@@ -532,6 +574,9 @@ ${PYSITELIB}/scipy/linalg/_expm_frechet.pyo
 ${PYSITELIB}/scipy/linalg/_fblas.so
 ${PYSITELIB}/scipy/linalg/_flapack.so
 ${PYSITELIB}/scipy/linalg/_flinalg.so
+${PYSITELIB}/scipy/linalg/_generate_pyx.py
+${PYSITELIB}/scipy/linalg/_generate_pyx.pyc
+${PYSITELIB}/scipy/linalg/_generate_pyx.pyo
 ${PYSITELIB}/scipy/linalg/_interpolative.so
 ${PYSITELIB}/scipy/linalg/_interpolative_backend.py
 ${PYSITELIB}/scipy/linalg/_interpolative_backend.pyc
@@ -545,6 +590,9 @@ ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyo
 ${PYSITELIB}/scipy/linalg/_procrustes.py
 ${PYSITELIB}/scipy/linalg/_procrustes.pyc
 ${PYSITELIB}/scipy/linalg/_procrustes.pyo
+${PYSITELIB}/scipy/linalg/_sketches.py
+${PYSITELIB}/scipy/linalg/_sketches.pyc
+${PYSITELIB}/scipy/linalg/_sketches.pyo
 ${PYSITELIB}/scipy/linalg/_solve_toeplitz.so
 ${PYSITELIB}/scipy/linalg/_solvers.py
 ${PYSITELIB}/scipy/linalg/_solvers.pyc
@@ -558,9 +606,6 @@ ${PYSITELIB}/scipy/linalg/basic.pyo
 ${PYSITELIB}/scipy/linalg/blas.py
 ${PYSITELIB}/scipy/linalg/blas.pyc
 ${PYSITELIB}/scipy/linalg/blas.pyo
-${PYSITELIB}/scipy/linalg/calc_lwork.py
-${PYSITELIB}/scipy/linalg/calc_lwork.pyc
-${PYSITELIB}/scipy/linalg/calc_lwork.pyo
 ${PYSITELIB}/scipy/linalg/cython_blas.pxd
 ${PYSITELIB}/scipy/linalg/cython_blas.so
 ${PYSITELIB}/scipy/linalg/cython_lapack.pxd
@@ -607,6 +652,9 @@ ${PYSITELIB}/scipy/linalg/setup.pyo
 ${PYSITELIB}/scipy/linalg/special_matrices.py
 ${PYSITELIB}/scipy/linalg/special_matrices.pyc
 ${PYSITELIB}/scipy/linalg/special_matrices.pyo
+${PYSITELIB}/scipy/linalg/src/id_dist/doc/doc.tex
+${PYSITELIB}/scipy/linalg/src/lapack_deprecations/LICENSE
+${PYSITELIB}/scipy/linalg/tests/__init__.py
 ${PYSITELIB}/scipy/linalg/tests/data/carex_15_data.npz
 ${PYSITELIB}/scipy/linalg/tests/data/carex_18_data.npz
 ${PYSITELIB}/scipy/linalg/tests/data/carex_19_data.npz
@@ -627,6 +675,7 @@ ${PYSITELIB}/scipy/linalg/tests/test_interpolative.py
 ${PYSITELIB}/scipy/linalg/tests/test_lapack.py
 ${PYSITELIB}/scipy/linalg/tests/test_matfuncs.py
 ${PYSITELIB}/scipy/linalg/tests/test_procrustes.py
+${PYSITELIB}/scipy/linalg/tests/test_sketches.py
 ${PYSITELIB}/scipy/linalg/tests/test_solve_toeplitz.py
 ${PYSITELIB}/scipy/linalg/tests/test_solvers.py
 ${PYSITELIB}/scipy/linalg/tests/test_special_matrices.py
@@ -647,6 +696,7 @@ ${PYSITELIB}/scipy/misc/pilutil.pyo
 ${PYSITELIB}/scipy/misc/setup.py
 ${PYSITELIB}/scipy/misc/setup.pyc
 ${PYSITELIB}/scipy/misc/setup.pyo
+${PYSITELIB}/scipy/misc/tests/__init__.py
 ${PYSITELIB}/scipy/misc/tests/data/3x3x3.png
 ${PYSITELIB}/scipy/misc/tests/data/3x3x4.png
 ${PYSITELIB}/scipy/misc/tests/data/3x4x3.png
@@ -707,6 +757,7 @@ ${PYSITELIB}/scipy/ndimage/morphology.pyo
 ${PYSITELIB}/scipy/ndimage/setup.py
 ${PYSITELIB}/scipy/ndimage/setup.pyc
 ${PYSITELIB}/scipy/ndimage/setup.pyo
+${PYSITELIB}/scipy/ndimage/tests/__init__.py
 ${PYSITELIB}/scipy/ndimage/tests/data/README.txt
 ${PYSITELIB}/scipy/ndimage/tests/data/label_inputs.txt
 ${PYSITELIB}/scipy/ndimage/tests/data/label_results.txt
@@ -735,6 +786,7 @@ ${PYSITELIB}/scipy/odr/odrpack.pyo
 ${PYSITELIB}/scipy/odr/setup.py
 ${PYSITELIB}/scipy/odr/setup.pyc
 ${PYSITELIB}/scipy/odr/setup.pyo
+${PYSITELIB}/scipy/odr/tests/__init__.py
 ${PYSITELIB}/scipy/odr/tests/test_odr.py
 ${PYSITELIB}/scipy/optimize/__init__.py
 ${PYSITELIB}/scipy/optimize/__init__.pyc
@@ -754,6 +806,9 @@ ${PYSITELIB}/scipy/optimize/_lbfgsb.so
 ${PYSITELIB}/scipy/optimize/_linprog.py
 ${PYSITELIB}/scipy/optimize/_linprog.pyc
 ${PYSITELIB}/scipy/optimize/_linprog.pyo
+${PYSITELIB}/scipy/optimize/_linprog_ip.py
+${PYSITELIB}/scipy/optimize/_linprog_ip.pyc
+${PYSITELIB}/scipy/optimize/_linprog_ip.pyo
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.py
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.pyc
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.pyo
@@ -790,6 +845,9 @@ ${PYSITELIB}/scipy/optimize/_nnls.so
 ${PYSITELIB}/scipy/optimize/_numdiff.py
 ${PYSITELIB}/scipy/optimize/_numdiff.pyc
 ${PYSITELIB}/scipy/optimize/_numdiff.pyo
+${PYSITELIB}/scipy/optimize/_remove_redundancy.py
+${PYSITELIB}/scipy/optimize/_remove_redundancy.pyc
+${PYSITELIB}/scipy/optimize/_remove_redundancy.pyo
 ${PYSITELIB}/scipy/optimize/_root.py
 ${PYSITELIB}/scipy/optimize/_root.pyc
 ${PYSITELIB}/scipy/optimize/_root.pyo
@@ -797,12 +855,25 @@ ${PYSITELIB}/scipy/optimize/_slsqp.so
 ${PYSITELIB}/scipy/optimize/_spectral.py
 ${PYSITELIB}/scipy/optimize/_spectral.pyc
 ${PYSITELIB}/scipy/optimize/_spectral.pyo
+${PYSITELIB}/scipy/optimize/_trlib/__init__.py
+${PYSITELIB}/scipy/optimize/_trlib/__init__.pyc
+${PYSITELIB}/scipy/optimize/_trlib/__init__.pyo
+${PYSITELIB}/scipy/optimize/_trlib/_trlib.so
+${PYSITELIB}/scipy/optimize/_trlib/setup.py
+${PYSITELIB}/scipy/optimize/_trlib/setup.pyc
+${PYSITELIB}/scipy/optimize/_trlib/setup.pyo
 ${PYSITELIB}/scipy/optimize/_trustregion.py
 ${PYSITELIB}/scipy/optimize/_trustregion.pyc
 ${PYSITELIB}/scipy/optimize/_trustregion.pyo
 ${PYSITELIB}/scipy/optimize/_trustregion_dogleg.py
 ${PYSITELIB}/scipy/optimize/_trustregion_dogleg.pyc
 ${PYSITELIB}/scipy/optimize/_trustregion_dogleg.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_exact.py
+${PYSITELIB}/scipy/optimize/_trustregion_exact.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_exact.pyo
+${PYSITELIB}/scipy/optimize/_trustregion_krylov.py
+${PYSITELIB}/scipy/optimize/_trustregion_krylov.pyc
+${PYSITELIB}/scipy/optimize/_trustregion_krylov.pyo
 ${PYSITELIB}/scipy/optimize/_trustregion_ncg.py
 ${PYSITELIB}/scipy/optimize/_trustregion_ncg.pyc
 ${PYSITELIB}/scipy/optimize/_trustregion_ncg.pyo
@@ -816,6 +887,7 @@ ${PYSITELIB}/scipy/optimize/cobyla.pyo
 ${PYSITELIB}/scipy/optimize/lbfgsb.py
 ${PYSITELIB}/scipy/optimize/lbfgsb.pyc
 ${PYSITELIB}/scipy/optimize/lbfgsb.pyo
+${PYSITELIB}/scipy/optimize/lbfgsb/README
 ${PYSITELIB}/scipy/optimize/linesearch.py
 ${PYSITELIB}/scipy/optimize/linesearch.pyc
 ${PYSITELIB}/scipy/optimize/linesearch.pyo
@@ -839,9 +911,12 @@ ${PYSITELIB}/scipy/optimize/setup.pyo
 ${PYSITELIB}/scipy/optimize/slsqp.py
 ${PYSITELIB}/scipy/optimize/slsqp.pyc
 ${PYSITELIB}/scipy/optimize/slsqp.pyo
+${PYSITELIB}/scipy/optimize/tests/__init__.py
 ${PYSITELIB}/scipy/optimize/tests/test__basinhopping.py
 ${PYSITELIB}/scipy/optimize/tests/test__differential_evolution.py
+${PYSITELIB}/scipy/optimize/tests/test__linprog_ip_clean_inputs.py
 ${PYSITELIB}/scipy/optimize/tests/test__numdiff.py
+${PYSITELIB}/scipy/optimize/tests/test__remove_redundancy.py
 ${PYSITELIB}/scipy/optimize/tests/test__root.py
 ${PYSITELIB}/scipy/optimize/tests/test__spectral.py
 ${PYSITELIB}/scipy/optimize/tests/test_cobyla.py
@@ -860,6 +935,8 @@ ${PYSITELIB}/scipy/optimize/tests/test_regression.py
 ${PYSITELIB}/scipy/optimize/tests/test_slsqp.py
 ${PYSITELIB}/scipy/optimize/tests/test_tnc.py
 ${PYSITELIB}/scipy/optimize/tests/test_trustregion.py
+${PYSITELIB}/scipy/optimize/tests/test_trustregion_exact.py
+${PYSITELIB}/scipy/optimize/tests/test_trustregion_krylov.py
 ${PYSITELIB}/scipy/optimize/tests/test_zeros.py
 ${PYSITELIB}/scipy/optimize/tnc.py
 ${PYSITELIB}/scipy/optimize/tnc.pyc
@@ -917,6 +994,7 @@ ${PYSITELIB}/scipy/signal/spectral.py
 ${PYSITELIB}/scipy/signal/spectral.pyc
 ${PYSITELIB}/scipy/signal/spectral.pyo
 ${PYSITELIB}/scipy/signal/spline.so
+${PYSITELIB}/scipy/signal/tests/__init__.py
 ${PYSITELIB}/scipy/signal/tests/mpsig.py
 ${PYSITELIB}/scipy/signal/tests/test_array_tools.py
 ${PYSITELIB}/scipy/signal/tests/test_cont2discrete.py
@@ -971,9 +1049,6 @@ ${PYSITELIB}/scipy/sparse/csc.pyo
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.py
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.pyc
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.pyo
-${PYSITELIB}/scipy/sparse/csgraph/_components.py
-${PYSITELIB}/scipy/sparse/csgraph/_components.pyc
-${PYSITELIB}/scipy/sparse/csgraph/_components.pyo
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.py
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.pyc
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.pyo
@@ -988,9 +1063,9 @@ ${PYSITELIB}/scipy/sparse/csgraph/_validation.pyo
 ${PYSITELIB}/scipy/sparse/csgraph/setup.py
 ${PYSITELIB}/scipy/sparse/csgraph/setup.pyc
 ${PYSITELIB}/scipy/sparse/csgraph/setup.pyo
+${PYSITELIB}/scipy/sparse/csgraph/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_connected_components.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_conversions.py
-${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_components.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_laplacian.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_reordering.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_shortest_path.py
@@ -1029,6 +1104,7 @@ ${PYSITELIB}/scipy/sparse/linalg/_norm.pyo
 ${PYSITELIB}/scipy/sparse/linalg/_onenormest.py
 ${PYSITELIB}/scipy/sparse/linalg/_onenormest.pyc
 ${PYSITELIB}/scipy/sparse/linalg/_onenormest.pyo
+${PYSITELIB}/scipy/sparse/linalg/dsolve/SuperLU/License.txt
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/__init__.pyc
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/__init__.pyo
@@ -1042,10 +1118,12 @@ ${PYSITELIB}/scipy/sparse/linalg/dsolve/linsolve.pyo
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/setup.pyc
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/setup.pyo
+${PYSITELIB}/scipy/sparse/linalg/dsolve/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/dsolve/tests/test_linsolve.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/__init__.pyc
 ${PYSITELIB}/scipy/sparse/linalg/eigen/__init__.pyo
+${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/ARPACK/COPYING
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/__init__.pyc
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/__init__.pyo
@@ -1056,6 +1134,7 @@ ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/arpack.pyo
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/setup.pyc
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/setup.pyo
+${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/arpack/tests/test_arpack.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/__init__.pyc
@@ -1066,6 +1145,7 @@ ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/lobpcg.pyo
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/setup.pyc
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/setup.pyo
+${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/lobpcg/tests/test_lobpcg.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/eigen/setup.pyc
@@ -1076,6 +1156,9 @@ ${PYSITELIB}/scipy/sparse/linalg/interface.pyo
 ${PYSITELIB}/scipy/sparse/linalg/isolve/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/__init__.pyc
 ${PYSITELIB}/scipy/sparse/linalg/isolve/__init__.pyo
+${PYSITELIB}/scipy/sparse/linalg/isolve/_gcrotmk.py
+${PYSITELIB}/scipy/sparse/linalg/isolve/_gcrotmk.pyc
+${PYSITELIB}/scipy/sparse/linalg/isolve/_gcrotmk.pyo
 ${PYSITELIB}/scipy/sparse/linalg/isolve/_iterative.so
 ${PYSITELIB}/scipy/sparse/linalg/isolve/iterative.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/iterative.pyc
@@ -1095,7 +1178,9 @@ ${PYSITELIB}/scipy/sparse/linalg/isolve/minres.pyo
 ${PYSITELIB}/scipy/sparse/linalg/isolve/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/setup.pyc
 ${PYSITELIB}/scipy/sparse/linalg/isolve/setup.pyo
+${PYSITELIB}/scipy/sparse/linalg/isolve/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/tests/demo_lgmres.py
+${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_gcrotmk.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_iterative.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_lgmres.py
 ${PYSITELIB}/scipy/sparse/linalg/isolve/tests/test_lsmr.py
@@ -1110,6 +1195,7 @@ ${PYSITELIB}/scipy/sparse/linalg/matfuncs.pyo
 ${PYSITELIB}/scipy/sparse/linalg/setup.py
 ${PYSITELIB}/scipy/sparse/linalg/setup.pyc
 ${PYSITELIB}/scipy/sparse/linalg/setup.pyo
+${PYSITELIB}/scipy/sparse/linalg/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_expm_multiply.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_interface.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_matfuncs.py
@@ -1127,6 +1213,7 @@ ${PYSITELIB}/scipy/sparse/spfuncs.pyo
 ${PYSITELIB}/scipy/sparse/sputils.py
 ${PYSITELIB}/scipy/sparse/sputils.pyc
 ${PYSITELIB}/scipy/sparse/sputils.pyo
+${PYSITELIB}/scipy/sparse/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/tests/data/csc_py2.npz
 ${PYSITELIB}/scipy/sparse/tests/data/csc_py3.npz
 ${PYSITELIB}/scipy/sparse/tests/test_base.py
@@ -1161,9 +1248,11 @@ ${PYSITELIB}/scipy/spatial/kdtree.py
 ${PYSITELIB}/scipy/spatial/kdtree.pyc
 ${PYSITELIB}/scipy/spatial/kdtree.pyo
 ${PYSITELIB}/scipy/spatial/qhull.so
+${PYSITELIB}/scipy/spatial/qhull/COPYING.txt
 ${PYSITELIB}/scipy/spatial/setup.py
 ${PYSITELIB}/scipy/spatial/setup.pyc
 ${PYSITELIB}/scipy/spatial/setup.pyo
+${PYSITELIB}/scipy/spatial/tests/__init__.py
 ${PYSITELIB}/scipy/spatial/tests/data/cdist-X1.txt
 ${PYSITELIB}/scipy/spatial/tests/data/cdist-X2.txt
 ${PYSITELIB}/scipy/spatial/tests/data/degenerate_pointset.npz
@@ -1209,6 +1298,9 @@ ${PYSITELIB}/scipy/special/_ellip_harm.py
 ${PYSITELIB}/scipy/special/_ellip_harm.pyc
 ${PYSITELIB}/scipy/special/_ellip_harm.pyo
 ${PYSITELIB}/scipy/special/_ellip_harm_2.so
+${PYSITELIB}/scipy/special/_generate_pyx.py
+${PYSITELIB}/scipy/special/_generate_pyx.pyc
+${PYSITELIB}/scipy/special/_generate_pyx.pyo
 ${PYSITELIB}/scipy/special/_logsumexp.py
 ${PYSITELIB}/scipy/special/_logsumexp.pyc
 ${PYSITELIB}/scipy/special/_logsumexp.pyo
@@ -1253,9 +1345,6 @@ ${PYSITELIB}/scipy/special/basic.pyc
 ${PYSITELIB}/scipy/special/basic.pyo
 ${PYSITELIB}/scipy/special/cython_special.pxd
 ${PYSITELIB}/scipy/special/cython_special.so
-${PYSITELIB}/scipy/special/generate_ufuncs.py
-${PYSITELIB}/scipy/special/generate_ufuncs.pyc
-${PYSITELIB}/scipy/special/generate_ufuncs.pyo
 ${PYSITELIB}/scipy/special/lambertw.py
 ${PYSITELIB}/scipy/special/lambertw.pyc
 ${PYSITELIB}/scipy/special/lambertw.pyo
@@ -1272,6 +1361,7 @@ ${PYSITELIB}/scipy/special/specfun.so
 ${PYSITELIB}/scipy/special/spfun_stats.py
 ${PYSITELIB}/scipy/special/spfun_stats.pyc
 ${PYSITELIB}/scipy/special/spfun_stats.pyo
+${PYSITELIB}/scipy/special/tests/__init__.py
 ${PYSITELIB}/scipy/special/tests/data/README
 ${PYSITELIB}/scipy/special/tests/data/boost.npz
 ${PYSITELIB}/scipy/special/tests/data/gsl.npz
@@ -1284,6 +1374,7 @@ ${PYSITELIB}/scipy/special/tests/test_data.py
 ${PYSITELIB}/scipy/special/tests/test_digamma.py
 ${PYSITELIB}/scipy/special/tests/test_ellip_harm.py
 ${PYSITELIB}/scipy/special/tests/test_gammainc.py
+${PYSITELIB}/scipy/special/tests/test_kolmogorov.py
 ${PYSITELIB}/scipy/special/tests/test_lambertw.py
 ${PYSITELIB}/scipy/special/tests/test_loggamma.py
 ${PYSITELIB}/scipy/special/tests/test_logit.py
@@ -1291,6 +1382,7 @@ ${PYSITELIB}/scipy/special/tests/test_logsumexp.py
 ${PYSITELIB}/scipy/special/tests/test_mpmath.py
 ${PYSITELIB}/scipy/special/tests/test_orthogonal.py
 ${PYSITELIB}/scipy/special/tests/test_orthogonal_eval.py
+${PYSITELIB}/scipy/special/tests/test_pcf.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_expn_asy.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_gammainc.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_utils.py
@@ -1363,6 +1455,7 @@ ${PYSITELIB}/scipy/stats/statlib.so
 ${PYSITELIB}/scipy/stats/stats.py
 ${PYSITELIB}/scipy/stats/stats.pyc
 ${PYSITELIB}/scipy/stats/stats.pyo
+${PYSITELIB}/scipy/stats/tests/__init__.py
 ${PYSITELIB}/scipy/stats/tests/common_tests.py
 ${PYSITELIB}/scipy/stats/tests/data/nist_anova/AtmWtAg.dat
 ${PYSITELIB}/scipy/stats/tests/data/nist_anova/SiRstv.dat
diff --git a/math/py-scipy/distinfo b/math/py-scipy/distinfo
index d771bee6fd1..89caca7863c 100644
--- a/math/py-scipy/distinfo
+++ b/math/py-scipy/distinfo
@@ -1,7 +1,7 @@
-$NetBSD: distinfo,v 1.13 2017/08/22 21:37:27 he Exp $
+$NetBSD: distinfo,v 1.14 2017/11/02 09:40:29 adam Exp $
 
-SHA1 (scipy-0.19.1.tar.gz) = b6397bcd7c62e46a6dc12f3d0df07c184912108a
-RMD160 (scipy-0.19.1.tar.gz) = d1314b26ee569df47d99fa98b86ac3aa7dc2d433
-SHA512 (scipy-0.19.1.tar.gz) = 5c124c44c672dcb53c31f8592fd9f74189f04cb0bade99476a2a6eb4844338e3e9842f27a148b007b7eed25cbfde090a697575a381ebe4ca066abdf54c214203
-Size (scipy-0.19.1.tar.gz) = 14083805 bytes
+SHA1 (scipy-1.0.0.tar.gz) = 2437a334b11a7016965d1345fdc50f5aaf1234d9
+RMD160 (scipy-1.0.0.tar.gz) = 69f97740f4a5f5ec82d67ae7e9a22ac3170ff757
+SHA512 (scipy-1.0.0.tar.gz) = 7d55c5660ac606933d517171a229b288fd0ea8d9fdd8e30fac3d294545a26b2700c7b100b014a93231c4122dee0f1ddd741c00f5902643a6ccc287cdf581da7a
+Size (scipy-1.0.0.tar.gz) = 15246397 bytes
 SHA1 (patch-scipy_special___round.h) = 30799ea2c824dc9cc0b399e7450ec10ec7137d2b