Update to 4.1.0

Upstream changelog is too long, please visit:
https://computation.llnl.gov/projects/sundials/release-history

3 files changed, 97 insertions, 47 deletions

diff --git a/math/sundials/Makefile b/math/sundials/Makefile
index 1a4bf35eeb1..684a8a08dfc 100644
--- a/math/sundials/Makefile
+++ b/math/sundials/Makefile
@@ -1,7 +1,6 @@
-# $NetBSD: Makefile,v 1.2 2018/09/29 12:37:20 tnn Exp $
+# $NetBSD: Makefile,v 1.3 2019/03/10 02:30:06 wen Exp $
 
-DISTNAME=	sundials-3.1.1
-PKGREVISION=	1
+DISTNAME=	sundials-4.1.0
 CATEGORIES=	math
 MASTER_SITES=	https://computation.llnl.gov/projects/sundials/download/
 
@@ -23,7 +22,7 @@ post-extract:
 	${MKDIR} ${WRKSRC}
 
 post-install:
-	${MV} ${DESTDIR}${PREFIX}/LICENSE \
+	${MV} ${DESTDIR}${PREFIX}/include/sundials/LICENSE \
 		${DESTDIR}${PREFIX}/share/doc/${PKGBASE}
 	${INSTALL_DATA} ${WRKSRC}/../README.md ${WRKSRC}/../doc/*/* \
 		${DESTDIR}${PREFIX}/share/doc/${PKGBASE}
diff --git a/math/sundials/PLIST b/math/sundials/PLIST
index 995fc8470ba..5016ecbd396 100644
--- a/math/sundials/PLIST
+++ b/math/sundials/PLIST
@@ -1,40 +1,45 @@
-@comment $NetBSD: PLIST,v 1.2 2018/09/29 12:37:20 tnn Exp $
+@comment $NetBSD: PLIST,v 1.3 2019/03/10 02:30:06 wen Exp $
 include/arkode/arkode.h
+include/arkode/arkode_arkstep.h
 include/arkode/arkode_bandpre.h
 include/arkode/arkode_bbdpre.h
-include/arkode/arkode_direct.h
-include/arkode/arkode_impl.h
-include/arkode/arkode_spils.h
+include/arkode/arkode_butcher.h
+include/arkode/arkode_butcher_dirk.h
+include/arkode/arkode_butcher_erk.h
+include/arkode/arkode_erkstep.h
+include/arkode/arkode_ls.h
+include/arkode/arkode_mristep.h
 include/cvode/cvode.h
 include/cvode/cvode_bandpre.h
 include/cvode/cvode_bbdpre.h
 include/cvode/cvode_diag.h
 include/cvode/cvode_direct.h
-include/cvode/cvode_impl.h
+include/cvode/cvode_ls.h
 include/cvode/cvode_spils.h
 include/cvodes/cvodes.h
 include/cvodes/cvodes_bandpre.h
 include/cvodes/cvodes_bbdpre.h
 include/cvodes/cvodes_diag.h
 include/cvodes/cvodes_direct.h
-include/cvodes/cvodes_impl.h
+include/cvodes/cvodes_ls.h
 include/cvodes/cvodes_spils.h
 include/ida/ida.h
 include/ida/ida_bbdpre.h
 include/ida/ida_direct.h
-include/ida/ida_impl.h
+include/ida/ida_ls.h
 include/ida/ida_spils.h
 include/idas/idas.h
 include/idas/idas_bbdpre.h
 include/idas/idas_direct.h
-include/idas/idas_impl.h
+include/idas/idas_ls.h
 include/idas/idas_spils.h
 include/kinsol/kinsol.h
 include/kinsol/kinsol_bbdpre.h
 include/kinsol/kinsol_direct.h
-include/kinsol/kinsol_impl.h
+include/kinsol/kinsol_ls.h
 include/kinsol/kinsol_spils.h
 include/nvector/nvector_serial.h
+include/sundials/NOTICE
 include/sundials/sundials_band.h
 include/sundials/sundials_config.h
 include/sundials/sundials_dense.h
@@ -45,6 +50,9 @@ include/sundials/sundials_iterative.h
 include/sundials/sundials_linearsolver.h
 include/sundials/sundials_math.h
 include/sundials/sundials_matrix.h
+include/sundials/sundials_mpi.h
+include/sundials/sundials_mpi_types.h
+include/sundials/sundials_nonlinearsolver.h
 include/sundials/sundials_nvector.h
 include/sundials/sundials_pcg.h
 include/sundials/sundials_sparse.h
@@ -64,74 +72,84 @@ include/sunlinsol/sunlinsol_sptfqmr.h
 include/sunmatrix/sunmatrix_band.h
 include/sunmatrix/sunmatrix_dense.h
 include/sunmatrix/sunmatrix_sparse.h
+include/sunnonlinsol/sunnonlinsol_fixedpoint.h
+include/sunnonlinsol/sunnonlinsol_newton.h
 lib/libsundials_arkode.a
 lib/libsundials_arkode.so
-lib/libsundials_arkode.so.2
-lib/libsundials_arkode.so.2.1.1
+lib/libsundials_arkode.so.3
+lib/libsundials_arkode.so.3.1.0
 lib/libsundials_cvode.a
 lib/libsundials_cvode.so
-lib/libsundials_cvode.so.3
+lib/libsundials_cvode.so.4
 lib/libsundials_cvode.so.${PKGVERSION}
 lib/libsundials_cvodes.a
 lib/libsundials_cvodes.so
-lib/libsundials_cvodes.so.3
+lib/libsundials_cvodes.so.4
 lib/libsundials_cvodes.so.${PKGVERSION}
 lib/libsundials_ida.a
 lib/libsundials_ida.so
-lib/libsundials_ida.so.3
+lib/libsundials_ida.so.4
 lib/libsundials_ida.so.${PKGVERSION}
 lib/libsundials_idas.a
 lib/libsundials_idas.so
-lib/libsundials_idas.so.2
-lib/libsundials_idas.so.2.1.0
+lib/libsundials_idas.so.3
+lib/libsundials_idas.so.3.1.0
 lib/libsundials_kinsol.a
 lib/libsundials_kinsol.so
-lib/libsundials_kinsol.so.3
+lib/libsundials_kinsol.so.4
 lib/libsundials_kinsol.so.${PKGVERSION}
 lib/libsundials_nvecserial.a
 lib/libsundials_nvecserial.so
-lib/libsundials_nvecserial.so.3
+lib/libsundials_nvecserial.so.4
 lib/libsundials_nvecserial.so.${PKGVERSION}
 lib/libsundials_sunlinsolband.a
 lib/libsundials_sunlinsolband.so
-lib/libsundials_sunlinsolband.so.1
-lib/libsundials_sunlinsolband.so.1.1.1
+lib/libsundials_sunlinsolband.so.2
+lib/libsundials_sunlinsolband.so.2.1.0
 lib/libsundials_sunlinsoldense.a
 lib/libsundials_sunlinsoldense.so
-lib/libsundials_sunlinsoldense.so.1
-lib/libsundials_sunlinsoldense.so.1.1.1
+lib/libsundials_sunlinsoldense.so.2
+lib/libsundials_sunlinsoldense.so.2.1.0
 lib/libsundials_sunlinsolpcg.a
 lib/libsundials_sunlinsolpcg.so
-lib/libsundials_sunlinsolpcg.so.1
-lib/libsundials_sunlinsolpcg.so.1.1.1
+lib/libsundials_sunlinsolpcg.so.2
+lib/libsundials_sunlinsolpcg.so.2.1.0
 lib/libsundials_sunlinsolspbcgs.a
 lib/libsundials_sunlinsolspbcgs.so
-lib/libsundials_sunlinsolspbcgs.so.1
-lib/libsundials_sunlinsolspbcgs.so.1.1.1
+lib/libsundials_sunlinsolspbcgs.so.2
+lib/libsundials_sunlinsolspbcgs.so.2.1.0
 lib/libsundials_sunlinsolspfgmr.a
 lib/libsundials_sunlinsolspfgmr.so
-lib/libsundials_sunlinsolspfgmr.so.1
-lib/libsundials_sunlinsolspfgmr.so.1.1.1
+lib/libsundials_sunlinsolspfgmr.so.2
+lib/libsundials_sunlinsolspfgmr.so.2.1.0
 lib/libsundials_sunlinsolspgmr.a
 lib/libsundials_sunlinsolspgmr.so
-lib/libsundials_sunlinsolspgmr.so.1
-lib/libsundials_sunlinsolspgmr.so.1.1.1
+lib/libsundials_sunlinsolspgmr.so.2
+lib/libsundials_sunlinsolspgmr.so.2.1.0
 lib/libsundials_sunlinsolsptfqmr.a
 lib/libsundials_sunlinsolsptfqmr.so
-lib/libsundials_sunlinsolsptfqmr.so.1
-lib/libsundials_sunlinsolsptfqmr.so.1.1.1
+lib/libsundials_sunlinsolsptfqmr.so.2
+lib/libsundials_sunlinsolsptfqmr.so.2.1.0
 lib/libsundials_sunmatrixband.a
 lib/libsundials_sunmatrixband.so
-lib/libsundials_sunmatrixband.so.1
-lib/libsundials_sunmatrixband.so.1.1.1
+lib/libsundials_sunmatrixband.so.2
+lib/libsundials_sunmatrixband.so.2.1.0
 lib/libsundials_sunmatrixdense.a
 lib/libsundials_sunmatrixdense.so
-lib/libsundials_sunmatrixdense.so.1
-lib/libsundials_sunmatrixdense.so.1.1.1
+lib/libsundials_sunmatrixdense.so.2
+lib/libsundials_sunmatrixdense.so.2.1.0
 lib/libsundials_sunmatrixsparse.a
 lib/libsundials_sunmatrixsparse.so
-lib/libsundials_sunmatrixsparse.so.1
-lib/libsundials_sunmatrixsparse.so.1.1.1
+lib/libsundials_sunmatrixsparse.so.2
+lib/libsundials_sunmatrixsparse.so.2.1.0
+lib/libsundials_sunnonlinsolfixedpoint.a
+lib/libsundials_sunnonlinsolfixedpoint.so
+lib/libsundials_sunnonlinsolfixedpoint.so.1
+lib/libsundials_sunnonlinsolfixedpoint.so.1.1.0
+lib/libsundials_sunnonlinsolnewton.a
+lib/libsundials_sunnonlinsolnewton.so
+lib/libsundials_sunnonlinsolnewton.so.1
+lib/libsundials_sunnonlinsolnewton.so.1.1.0
 share/doc/sundials/LICENSE
 share/doc/sundials/README.md
 share/doc/sundials/ark_examples.pdf
@@ -161,14 +179,22 @@ share/examples/sundials/arkode/C_serial/ark_brusselator1D.c
 share/examples/sundials/arkode/C_serial/ark_brusselator1D.out
 share/examples/sundials/arkode/C_serial/ark_brusselator_fp.c
 share/examples/sundials/arkode/C_serial/ark_brusselator_fp.out
+share/examples/sundials/arkode/C_serial/ark_brusselator_mri.c
+share/examples/sundials/arkode/C_serial/ark_brusselator_mri.out
 share/examples/sundials/arkode/C_serial/ark_heat1D.c
 share/examples/sundials/arkode/C_serial/ark_heat1D.out
 share/examples/sundials/arkode/C_serial/ark_heat1D_adapt.c
 share/examples/sundials/arkode/C_serial/ark_heat1D_adapt.out
+share/examples/sundials/arkode/C_serial/ark_onewaycouple_mri.c
+share/examples/sundials/arkode/C_serial/ark_onewaycouple_mri.out
+share/examples/sundials/arkode/C_serial/ark_reaction_diffusion_mri.c
+share/examples/sundials/arkode/C_serial/ark_reaction_diffusion_mri.out
 share/examples/sundials/arkode/C_serial/ark_robertson.c
 share/examples/sundials/arkode/C_serial/ark_robertson.out
 share/examples/sundials/arkode/C_serial/ark_robertson_root.c
 share/examples/sundials/arkode/C_serial/ark_robertson_root.out
+share/examples/sundials/arkode/C_serial/ark_twowaycouple_mri.c
+share/examples/sundials/arkode/C_serial/ark_twowaycouple_mri.out
 share/examples/sundials/arkode/C_serial/plot_brusselator1D.py
 share/examples/sundials/arkode/C_serial/plot_brusselator1D_FEM.py
 share/examples/sundials/arkode/C_serial/plot_heat1D.py
@@ -182,6 +208,8 @@ share/examples/sundials/cvode/serial/cvAdvDiff_bnd.c
 share/examples/sundials/cvode/serial/cvAdvDiff_bnd.out
 share/examples/sundials/cvode/serial/cvDirectDemo_ls.c
 share/examples/sundials/cvode/serial/cvDirectDemo_ls.out
+share/examples/sundials/cvode/serial/cvDisc_dns.c
+share/examples/sundials/cvode/serial/cvDisc_dns.out
 share/examples/sundials/cvode/serial/cvDiurnal_kry.c
 share/examples/sundials/cvode/serial/cvDiurnal_kry.out
 share/examples/sundials/cvode/serial/cvDiurnal_kry_bp.c
@@ -192,6 +220,10 @@ share/examples/sundials/cvode/serial/cvKrylovDemo_prec.c
 share/examples/sundials/cvode/serial/cvKrylovDemo_prec.out
 share/examples/sundials/cvode/serial/cvRoberts_dns.c
 share/examples/sundials/cvode/serial/cvRoberts_dns.out
+share/examples/sundials/cvode/serial/cvRoberts_dns_constraints.c
+share/examples/sundials/cvode/serial/cvRoberts_dns_constraints.out
+share/examples/sundials/cvode/serial/cvRoberts_dns_negsol.c
+share/examples/sundials/cvode/serial/cvRoberts_dns_negsol.out
 share/examples/sundials/cvode/serial/cvRoberts_dns_uw.c
 share/examples/sundials/cvode/serial/cvRoberts_dns_uw.out
 share/examples/sundials/cvodes/serial/CMakeLists.txt
@@ -221,9 +253,16 @@ share/examples/sundials/cvodes/serial/cvsKrylovDemo_prec.c
 share/examples/sundials/cvodes/serial/cvsKrylovDemo_prec.out
 share/examples/sundials/cvodes/serial/cvsRoberts_ASAi_dns.c
 share/examples/sundials/cvodes/serial/cvsRoberts_ASAi_dns.out
+share/examples/sundials/cvodes/serial/cvsRoberts_ASAi_dns_constraints.c
+share/examples/sundials/cvodes/serial/cvsRoberts_ASAi_dns_constraints.out
 share/examples/sundials/cvodes/serial/cvsRoberts_FSA_dns.c
+share/examples/sundials/cvodes/serial/cvsRoberts_FSA_dns_Switch.c
+share/examples/sundials/cvodes/serial/cvsRoberts_FSA_dns_Switch.out
+share/examples/sundials/cvodes/serial/cvsRoberts_FSA_dns_constraints.c
 share/examples/sundials/cvodes/serial/cvsRoberts_dns.c
 share/examples/sundials/cvodes/serial/cvsRoberts_dns.out
+share/examples/sundials/cvodes/serial/cvsRoberts_dns_constraints.c
+share/examples/sundials/cvodes/serial/cvsRoberts_dns_constraints.out
 share/examples/sundials/cvodes/serial/cvsRoberts_dns_uw.c
 share/examples/sundials/cvodes/serial/cvsRoberts_dns_uw.out
 share/examples/sundials/ida/serial/CMakeLists.txt
@@ -364,3 +403,15 @@ share/examples/sundials/sunmatrix/sparse/sundials_nvector.c
 share/examples/sundials/sunmatrix/sparse/test_sunmatrix.c
 share/examples/sundials/sunmatrix/sparse/test_sunmatrix.h
 share/examples/sundials/sunmatrix/sparse/test_sunmatrix_sparse.c
+share/examples/sundials/sunnonlinsol/fixedpoint/CMakeLists.txt
+share/examples/sundials/sunnonlinsol/fixedpoint/Makefile
+share/examples/sundials/sunnonlinsol/fixedpoint/sundials_nonlinearsolver.c
+share/examples/sundials/sunnonlinsol/fixedpoint/sundials_nvector.c
+share/examples/sundials/sunnonlinsol/fixedpoint/test_sunnonlinsol_fixedpoint.c
+share/examples/sundials/sunnonlinsol/newton/CMakeLists.txt
+share/examples/sundials/sunnonlinsol/newton/Makefile
+share/examples/sundials/sunnonlinsol/newton/sundials_linearsolver.c
+share/examples/sundials/sunnonlinsol/newton/sundials_matrix.c
+share/examples/sundials/sunnonlinsol/newton/sundials_nonlinearsolver.c
+share/examples/sundials/sunnonlinsol/newton/sundials_nvector.c
+share/examples/sundials/sunnonlinsol/newton/test_sunnonlinsol_newton.c
diff --git a/math/sundials/distinfo b/math/sundials/distinfo
index ab78321b29a..6fb8a4be76a 100644
--- a/math/sundials/distinfo
+++ b/math/sundials/distinfo
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.1 2018/07/07 04:15:18 minskim Exp $
+$NetBSD: distinfo,v 1.2 2019/03/10 02:30:06 wen Exp $
 
-SHA1 (sundials-3.1.1.tar.gz) = 53c89deb59e6c8bae52e9bc4b3a32ff7e7b85dd9
-RMD160 (sundials-3.1.1.tar.gz) = 1224208f1cbef16d0de4fbfad750d187fa01ffe1
-SHA512 (sundials-3.1.1.tar.gz) = 3e8fc7183c5503943f1ba00c73b04c1614a48b6e6cb90559ec5481f9acffaa19acd97bd961611b251ebdc032f1a13f0919b0ab0cdfe9d9b4ddc99d40bef5719f
-Size (sundials-3.1.1.tar.gz) = 14955445 bytes
+SHA1 (sundials-4.1.0.tar.gz) = ef2a4175b3974960febd5cba4f65e53628009cc6
+RMD160 (sundials-4.1.0.tar.gz) = 8c6aedc85db6679034472ad3aca9ef9b75d37c8e
+SHA512 (sundials-4.1.0.tar.gz) = 1922dca3f0b8869098670aede802e48abec39607c96304e4efd9b03d195b16920175846fce10641aeebc48c216bda73c8691139dce57ffa7731a6bc8194b81b0
+Size (sundials-4.1.0.tar.gz) = 17221960 bytes