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authorfrueauf <frueauf@pkgsrc.org>1998-12-21 10:29:39 +0000
committerfrueauf <frueauf@pkgsrc.org>1998-12-21 10:29:39 +0000
commitf799c41fed21677d428e96816321576bbd6b8720 (patch)
tree43e250f9486a098454b3717921c83f734a78cfe5 /math
parentc3bd14b4bbdd2f56f53036917326d62234c3bc02 (diff)
downloadpkgsrc-f799c41fed21677d428e96816321576bbd6b8720.tar.gz
Update R to 0.63.1, provided in pr 6618 by Johnny C. Lam.
Changes since 0.63.0 are mostly bigfixes and patches that make it actually work properly with NetBSD.
Diffstat (limited to 'math')
-rw-r--r--math/R/Makefile21
-rw-r--r--math/R/files/md54
-rw-r--r--math/R/patches/patch-aa10
-rw-r--r--math/R/patches/patch-ab19
-rw-r--r--math/R/patches/patch-ac13
-rw-r--r--math/R/patches/patch-ad35
-rw-r--r--math/R/pkg/PLIST22
7 files changed, 107 insertions, 17 deletions
diff --git a/math/R/Makefile b/math/R/Makefile
index 9c0e89881ab..6c99b71a31a 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,8 +1,7 @@
-# $NetBSD: Makefile,v 1.1.1.1 1998/12/04 11:36:03 frueauf Exp $
+# $NetBSD: Makefile,v 1.2 1998/12/21 10:29:39 frueauf Exp $
#
-DISTNAME= R-0.63.0
-WRKSRC= ${WRKDIR}/R-0.63
+DISTNAME= R-0.63.1
CATEGORIES= math
MASTER_SITES= http://lib.stat.cmu.edu/R/CRAN/src/base/ \
ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
@@ -19,13 +18,13 @@ MAINTAINER= lamj@stat.cmu.edu
HOMEPAGE= http://lib.stat.cmu.edu/R/CRAN/
.if !exists(/usr/bin/f77)
-BUILD_DEPENDS+= f2c-19980516p1:../../lang/f2c
+DEPENDS+= f2c:../../lang/f2c
.endif
DEPENDS+= readline-2.2:../../devel/readline
-USE_PERL5= yes
-USE_GMAKE= yes
+CONFLICTS= R-0.63.0
+USE_PERL5= yes
GNU_CONFIGURE= yes
CONFIGURE_ARGS+=--enable-readline --with-x
@@ -40,13 +39,11 @@ R_PAPERSIZE= Letter
.endif
.endif
-CFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
-CONFIGURE_ENV+= CPPFLAGS=-I${LOCALBASE}/include \
- DLLFLAGS="${LDFLAGS}" \
- R_PAPERSIZE=${R_PAPERSIZE}
+CONFIGURE_ENV+= CPPFLAGS="-I${LOCALBASE}/include" \
+ R_PAPERSIZE="${R_PAPERSIZE}"
-post-build:
- ${TOUCH} ${WRKSRC}/library/modreg/data/.keep_me
+post-install:
+ ${RMDIR} ${PREFIX}/share/R/library/modreg/data
.include "../../mk/bsd.pkg.mk"
diff --git a/math/R/files/md5 b/math/R/files/md5
index 270d6a5e40c..0776e092451 100644
--- a/math/R/files/md5
+++ b/math/R/files/md5
@@ -1,3 +1,3 @@
-$NetBSD: md5,v 1.1.1.1 1998/12/04 11:36:03 frueauf Exp $
+$NetBSD: md5,v 1.2 1998/12/21 10:29:40 frueauf Exp $
-MD5 (R-0.63.0.tgz) = 653906d111252bb3600e18b5bea0a1d1
+MD5 (R-0.63.1.tgz) = 24cc595468a2584328ae30ade1b8e11e
diff --git a/math/R/patches/patch-aa b/math/R/patches/patch-aa
new file mode 100644
index 00000000000..a6633cad848
--- /dev/null
+++ b/math/R/patches/patch-aa
@@ -0,0 +1,10 @@
+$NetBSD: patch-aa,v 1.1 1998/12/21 10:29:40 frueauf Exp $
+
+--- Makeconf.in.orig Mon Nov 23 04:20:11 1998
++++ Makeconf.in Sun Dec 20 12:12:22 1998
+@@ -50,4 +50,4 @@
+ libdir = @libdir@
+ mandir = @mandir@
+
+-rhome = @libdir@/R
++rhome = @datadir@/R
diff --git a/math/R/patches/patch-ab b/math/R/patches/patch-ab
new file mode 100644
index 00000000000..02ce15a7cef
--- /dev/null
+++ b/math/R/patches/patch-ab
@@ -0,0 +1,19 @@
+$NetBSD: patch-ab,v 1.1 1998/12/21 10:29:41 frueauf Exp $
+
+--- configure.orig Fri Dec 4 08:06:25 1998
++++ configure Sun Dec 20 09:54:23 1998
+@@ -3290,6 +3290,14 @@
+ *linux)
+ DLLFLAGS=-export-dynamic
+ ;;
++ *netbsd*)
++ if ${CPP} - -dM </dev/null | grep -q __ELF__; then
++ DLLFLAGS="-export-dynamic"
++ SHLIBLDFLAGS="-shared"
++ else
++ SHLIBLDFLAGS="-Bshareable"
++ fi
++ ;;
+ *sgi*)
+ SHLIBLDFLAGS="-shared"
+ ;;
diff --git a/math/R/patches/patch-ac b/math/R/patches/patch-ac
new file mode 100644
index 00000000000..c65257517a6
--- /dev/null
+++ b/math/R/patches/patch-ac
@@ -0,0 +1,13 @@
+$NetBSD: patch-ac,v 1.1 1998/12/21 10:29:41 frueauf Exp $
+
+--- src/main/Makefile.in.orig Wed Nov 25 12:54:51 1998
++++ src/main/Makefile.in Sun Dec 20 09:53:29 1998
+@@ -34,7 +34,7 @@
+
+ $(top_builddir)/bin/R.binary: $(OBJS) $(RLIBS)
+ @$(MKINSTALLDIRS) $(top_builddir)/bin
+- $(LDCMD) $(DLLFLAGS) -o $@ $(OBJS) $(ALL_LIBS)
++ $(LDCMD) $(DLLFLAGS) $(LDFLAGS) -o $@ $(OBJS) $(ALL_LIBS)
+
+ ../unix/libunix.a:
+ (cd ../unix; $(MAKE) $(@F))
diff --git a/math/R/patches/patch-ad b/math/R/patches/patch-ad
new file mode 100644
index 00000000000..2cd041023d5
--- /dev/null
+++ b/math/R/patches/patch-ad
@@ -0,0 +1,35 @@
+$NetBSD: patch-ad,v 1.1 1998/12/21 10:29:41 frueauf Exp $
+
+--- src/library/eda/src/Makefile.in.orig Tue Oct 13 04:04:28 1998
++++ src/library/eda/src/Makefile.in Sun Dec 20 11:16:36 1998
+@@ -18,7 +18,7 @@
+
+ all: $(LIB)
+ @$(MKINSTALLDIRS) $(top_builddir)/library/$(pkg)/libs
+- @cp $< $(top_builddir)/library/$(pkg)/libs
++ @cp $(LIB) $(top_builddir)/library/$(pkg)/libs
+
+ $(LIB): $(OBJS)
+ $(SHLIBLD) $(SHLIBLDFLAGS) -o $@ $(OBJS)
+--- src/library/modreg/src/Makefile.in.orig Tue Nov 10 03:07:44 1998
++++ src/library/modreg/src/Makefile.in Sun Dec 20 11:17:28 1998
+@@ -19,7 +19,7 @@
+
+ all: $(LIB)
+ @$(MKINSTALLDIRS) $(top_builddir)/library/$(pkg)/libs
+- @cp $< $(top_builddir)/library/$(pkg)/libs
++ @cp $(LIB) $(top_builddir)/library/$(pkg)/libs
+
+ $(LIB): $(OBJS)
+ $(top_builddir)/bin/R SHLIB -o $@ $(OBJS)
+--- src/library/mva/src/Makefile.in.orig Tue Oct 13 04:04:28 1998
++++ src/library/mva/src/Makefile.in Sun Dec 20 11:18:09 1998
+@@ -19,7 +19,7 @@
+
+ all: $(LIB)
+ @$(MKINSTALLDIRS) $(top_builddir)/library/$(pkg)/libs
+- @cp $< $(top_builddir)/library/$(pkg)/libs
++ @cp $(LIB) $(top_builddir)/library/$(pkg)/libs
+
+ $(LIB): $(OBJS)
+ $(SHLIBLD) $(SHLIBLDFLAGS) -o $@ $(OBJS)
diff --git a/math/R/pkg/PLIST b/math/R/pkg/PLIST
index 3bb285e3b99..7f2c6e26b3e 100644
--- a/math/R/pkg/PLIST
+++ b/math/R/pkg/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 1998/12/04 11:36:03 frueauf Exp $
+@comment $NetBSD: PLIST,v 1.2 1998/12/21 10:29:42 frueauf Exp $
bin/R
bin/Rd2txt
bin/Rdconv
@@ -109,6 +109,7 @@ share/R/doc/keyword-test
share/R/doc/manual/ABOUT.tex
share/R/doc/manual/Man.tex
share/R/doc/manual/Rd.sty
+share/R/doc/manual/Rd2dvi.tex
share/R/doc/manual/plotmath.tex
share/R/doc/manual/primitive-funs.tex
share/R/doc/manual/writing-Rd.tex
@@ -128,6 +129,7 @@ share/R/include/Mathlib.h
share/R/include/Memory.h
share/R/include/Platform.h
share/R/include/PrtUtil.h
+share/R/include/Random.h
share/R/include/S.h
share/R/include/S_compat.h
share/R/include/Utils.h
@@ -168,6 +170,7 @@ share/R/library/base/R-ex/Logistic.R
share/R/library/base/R-ex/Lognormal.R
share/R/library/base/R-ex/Machine.R
share/R/library/base/R-ex/Math.R
+share/R/library/base/R-ex/Memory.R
share/R/library/base/R-ex/NA.R
share/R/library/base/R-ex/NChisquare.R
share/R/library/base/R-ex/NULL.R
@@ -227,6 +230,7 @@ share/R/library/base/R-ex/box.R
share/R/library/base/R-ex/boxplot.R
share/R/library/base/R-ex/boxplot.stats.R
share/R/library/base/R-ex/browser.R
+share/R/library/base/R-ex/bug.report.R
share/R/library/base/R-ex/bxp.R
share/R/library/base/R-ex/c.R
share/R/library/base/R-ex/call.R
@@ -404,6 +408,7 @@ share/R/library/base/R-ex/model.extract.R
share/R/library/base/R-ex/model.frame.R
share/R/library/base/R-ex/model.matrix.R
share/R/library/base/R-ex/model.tables.R
+share/R/library/base/R-ex/mosaicplot.R
share/R/library/base/R-ex/mtext.R
share/R/library/base/R-ex/na.action.R
share/R/library/base/R-ex/na.fail.R
@@ -487,6 +492,7 @@ share/R/library/base/R-ex/rev.R
share/R/library/base/R-ex/rgb.R
share/R/library/base/R-ex/rivers.R
share/R/library/base/R-ex/row.R
+share/R/library/base/R-ex/rowsum.R
share/R/library/base/R-ex/rug.R
share/R/library/base/R-ex/sample.R
share/R/library/base/R-ex/save.R
@@ -656,6 +662,7 @@ share/R/library/base/help/Logistic
share/R/library/base/help/Lognormal
share/R/library/base/help/Machine
share/R/library/base/help/Math
+share/R/library/base/help/Memory
share/R/library/base/help/NA
share/R/library/base/help/NChisquare
share/R/library/base/help/NULL
@@ -715,6 +722,7 @@ share/R/library/base/help/box
share/R/library/base/help/boxplot
share/R/library/base/help/boxplot.stats
share/R/library/base/help/browser
+share/R/library/base/help/bug.report
share/R/library/base/help/bxp
share/R/library/base/help/c
share/R/library/base/help/call
@@ -892,6 +900,7 @@ share/R/library/base/help/model.extract
share/R/library/base/help/model.frame
share/R/library/base/help/model.matrix
share/R/library/base/help/model.tables
+share/R/library/base/help/mosaicplot
share/R/library/base/help/mtext
share/R/library/base/help/na.action
share/R/library/base/help/na.fail
@@ -975,6 +984,7 @@ share/R/library/base/help/rev
share/R/library/base/help/rgb
share/R/library/base/help/rivers
share/R/library/base/help/row
+share/R/library/base/help/rowsum
share/R/library/base/help/rug
share/R/library/base/help/sample
share/R/library/base/help/save
@@ -1092,6 +1102,7 @@ share/R/library/base/html/Logistic.html
share/R/library/base/html/Lognormal.html
share/R/library/base/html/Machine.html
share/R/library/base/html/Math.html
+share/R/library/base/html/Memory.html
share/R/library/base/html/NA.html
share/R/library/base/html/NChisquare.html
share/R/library/base/html/NULL.html
@@ -1151,6 +1162,7 @@ share/R/library/base/html/box.html
share/R/library/base/html/boxplot.html
share/R/library/base/html/boxplot.stats.html
share/R/library/base/html/browser.html
+share/R/library/base/html/bug.report.html
share/R/library/base/html/bxp.html
share/R/library/base/html/c.html
share/R/library/base/html/call.html
@@ -1328,6 +1340,7 @@ share/R/library/base/html/model.extract.html
share/R/library/base/html/model.frame.html
share/R/library/base/html/model.matrix.html
share/R/library/base/html/model.tables.html
+share/R/library/base/html/mosaicplot.html
share/R/library/base/html/mtext.html
share/R/library/base/html/na.action.html
share/R/library/base/html/na.fail.html
@@ -1411,6 +1424,7 @@ share/R/library/base/html/rev.html
share/R/library/base/html/rgb.html
share/R/library/base/html/rivers.html
share/R/library/base/html/row.html
+share/R/library/base/html/rowsum.html
share/R/library/base/html/rug.html
share/R/library/base/html/sample.html
share/R/library/base/html/save.html
@@ -1527,6 +1541,7 @@ share/R/library/base/latex/Logistic.tex
share/R/library/base/latex/Lognormal.tex
share/R/library/base/latex/Machine.tex
share/R/library/base/latex/Math.tex
+share/R/library/base/latex/Memory.tex
share/R/library/base/latex/NA.tex
share/R/library/base/latex/NChisquare.tex
share/R/library/base/latex/NULL.tex
@@ -1586,6 +1601,7 @@ share/R/library/base/latex/box.tex
share/R/library/base/latex/boxplot.stats.tex
share/R/library/base/latex/boxplot.tex
share/R/library/base/latex/browser.tex
+share/R/library/base/latex/bug.report.tex
share/R/library/base/latex/bxp.tex
share/R/library/base/latex/c.tex
share/R/library/base/latex/call.tex
@@ -1763,6 +1779,7 @@ share/R/library/base/latex/model.extract.tex
share/R/library/base/latex/model.frame.tex
share/R/library/base/latex/model.matrix.tex
share/R/library/base/latex/model.tables.tex
+share/R/library/base/latex/mosaicplot.tex
share/R/library/base/latex/mtext.tex
share/R/library/base/latex/na.action.tex
share/R/library/base/latex/na.fail.tex
@@ -1846,6 +1863,7 @@ share/R/library/base/latex/rev.tex
share/R/library/base/latex/rgb.tex
share/R/library/base/latex/rivers.tex
share/R/library/base/latex/row.tex
+share/R/library/base/latex/rowsum.tex
share/R/library/base/latex/rug.tex
share/R/library/base/latex/sample.tex
share/R/library/base/latex/save.tex
@@ -1961,7 +1979,6 @@ share/R/library/modreg/R-ex/smooth.spline.R
share/R/library/modreg/R-ex/supsmu.R
share/R/library/modreg/R/modreg
share/R/library/modreg/TITLE
-share/R/library/modreg/data/.keep_me
share/R/library/modreg/help/00Titles
share/R/library/modreg/help/AnIndex
share/R/library/modreg/help/ksmooth
@@ -2090,7 +2107,6 @@ share/R/library/stepfun/latex/stepfun.tex
@dirrm share/R/library/eda
@dirrm share/R/library/modreg/R
@dirrm share/R/library/modreg/R-ex
-@dirrm share/R/library/modreg/data
@dirrm share/R/library/modreg/help
@dirrm share/R/library/modreg/html
@dirrm share/R/library/modreg/latex