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author | adam <adam@pkgsrc.org> | 2017-10-18 16:17:12 +0000 |
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committer | adam <adam@pkgsrc.org> | 2017-10-18 16:17:12 +0000 |
commit | fcafe9d7f01bdef06c2ef427ff7b90142c39bba6 (patch) | |
tree | 73738fc1f8f2540878be43ab29be3e3ce2df318c /math | |
parent | b139771d8971097099e11758600b5c3f60dd34df (diff) | |
download | pkgsrc-fcafe9d7f01bdef06c2ef427ff7b90142c39bba6.tar.gz |
py-rpy: update to 2.9.0
Release 2.9.0:
New features
- New module :mod:`rpy2.situation` to extract and report informations
about the environment, such as where is the R HOME, what is the
version of R, what is the version of R rpy2 was built with, etc...
The module is also designed to be run directly and provide diagnostics:
`python -m rpy2.situation`.
- :meth:`Environment.values`, :meth:`Environment.pop`,
:meth:`Environment.popitems`, :meth:`Environment.clear`
to match :meth:`dict.values`,
:meth:`dict.pop`, :meth:`dict.popitems`, :meth:`dict.clear`.
- :class:`VectorOperationsDelegator` now has a method `__matmul__` to implement
Python's matrix multiplication operator (PEP-0645).
- A rule to convert R POSIXct vectors to pandas Timestamp vectors was added.
- method :meth:`_repr_html_` for R vectors to display HTML in jupyter.
Changes
- Starting several times the singleton :class:`EventProcessor` longer results
in a :class:`RuntimeError`.
- The target version for the R package `dplyr` mapped is now 0.7.1, and
:func:`rpy2.robjects.lib.dplyr.src_dt` and
:func:`rpy2.robjects.lib.dplyr.src_desc` are no longer present.
- :meth:`Environment.keys` is now a iterator to match :meth:`dict.keys`,
also an interator in Python 3.
- Target version of `ggplot2` library is 2.2.1.
- Option `stringsasfactors` in the constructor for the class `DataFrame`. If `False`, the
strings are no longer converted to factors. When converting from pandas data frames
the default is to no longer convert columns of strings to factors.
- The R "magic" for jupyter is now more consistently using the conversion system, and the
use of custom converters through the magic argument `-c` will work as expected.
- Docker-related files moved to directory docker/ (where variants image for rpy2 are available)
Bugs fixed
- :func:`numpy.float128` is not available on all platforms. The unit test
for it is now skipped on systems where it is not present
- R pairlist objects can now be sliced.
- Passing parameters names that are empty string to R function was
causing a segfault.
- Trying to build an atomic R vector from a Python object that has a length,
but it not a sequence nor an iterator was causing a segfault
Diffstat (limited to 'math')
-rw-r--r-- | math/py-rpy/Makefile | 20 | ||||
-rw-r--r-- | math/py-rpy/PLIST | 28 | ||||
-rw-r--r-- | math/py-rpy/distinfo | 10 |
3 files changed, 38 insertions, 20 deletions
diff --git a/math/py-rpy/Makefile b/math/py-rpy/Makefile index 6cf0050140f..95fce0aabc7 100644 --- a/math/py-rpy/Makefile +++ b/math/py-rpy/Makefile @@ -1,8 +1,7 @@ -# $NetBSD: Makefile,v 1.41 2016/10/03 12:25:36 wiz Exp $ +# $NetBSD: Makefile,v 1.42 2017/10/18 16:17:12 adam Exp $ -DISTNAME= rpy2-2.5.6 +DISTNAME= rpy2-2.9.0 PKGNAME= ${PYPKGPREFIX}-${DISTNAME:S/rpy2/rpy/} -PKGREVISION= 2 CATEGORIES= math python MASTER_SITES= ${MASTER_SITE_PYPI:=r/rpy2/} @@ -11,28 +10,23 @@ HOMEPAGE= http://rpy.sourceforge.net/ COMMENT= R interface for Python LICENSE= mpl-1.1 OR gnu-gpl-v2 OR gnu-lgpl-v2.1 +DEPENDS+= ${PYPKGPREFIX}-six-[0-9]*:../../lang/py-six DEPENDS+= ${PYPKGPREFIX}-sqlite3-[0-9]*:../../databases/py-sqlite3 USE_LANGUAGES+= c fortran77 -BUILDLINK_API_DEPENDS.R+= R>=2.11.0 +BUILDLINK_API_DEPENDS.R+= R>=3.3.0 LDFLAGS.SunOS+= -mimpure-text -REPLACE_PYTHON= rpy/tests.py +REPLACE_PYTHON= rpy/tests.py -.include "../../lang/python/pyversion.mk" - -PLIST_VARS= sd -.if ${PYPKGPREFIX} == "py27" -PLIST.sd= yes -DEPENDS+= ${PYPKGPREFIX}-singledispatch-[0-9]*:../../devel/py-singledispatch -.endif +PYTHON_VERSIONS_INCOMPATIBLE= 27 .include "../../devel/pcre/buildlink3.mk" -.include "../../mk/readline.buildlink3.mk" .include "../../lang/python/application.mk" .include "../../lang/python/egg.mk" .include "../../math/py-numpy/buildlink3.mk" .include "../../math/R/buildlink3.mk" +.include "../../mk/readline.buildlink3.mk" .include "../../mk/bsd.pkg.mk" diff --git a/math/py-rpy/PLIST b/math/py-rpy/PLIST index 68a63962f1f..dedaf24b6ad 100644 --- a/math/py-rpy/PLIST +++ b/math/py-rpy/PLIST @@ -1,8 +1,8 @@ -@comment $NetBSD: PLIST,v 1.16 2015/04/10 08:36:30 wiz Exp $ +@comment $NetBSD: PLIST,v 1.17 2017/10/18 16:17:12 adam Exp $ ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt -${PLIST.sd}${PYSITELIB}/${EGG_INFODIR}/requires.txt +${PYSITELIB}/${EGG_INFODIR}/requires.txt ${PYSITELIB}/${EGG_INFODIR}/top_level.txt ${PYSITELIB}/rpy2/__init__.py ${PYSITELIB}/rpy2/__init__.pyc @@ -120,18 +120,39 @@ ${PYSITELIB}/rpy2/robjects/language.pyo ${PYSITELIB}/rpy2/robjects/lib/__init__.py ${PYSITELIB}/rpy2/robjects/lib/__init__.pyc ${PYSITELIB}/rpy2/robjects/lib/__init__.pyo +${PYSITELIB}/rpy2/robjects/lib/dbplyr.py +${PYSITELIB}/rpy2/robjects/lib/dbplyr.pyc +${PYSITELIB}/rpy2/robjects/lib/dbplyr.pyo +${PYSITELIB}/rpy2/robjects/lib/dplyr.py +${PYSITELIB}/rpy2/robjects/lib/dplyr.pyc +${PYSITELIB}/rpy2/robjects/lib/dplyr.pyo ${PYSITELIB}/rpy2/robjects/lib/ggplot2.py ${PYSITELIB}/rpy2/robjects/lib/ggplot2.pyc ${PYSITELIB}/rpy2/robjects/lib/ggplot2.pyo +${PYSITELIB}/rpy2/robjects/lib/grdevices.py +${PYSITELIB}/rpy2/robjects/lib/grdevices.pyc +${PYSITELIB}/rpy2/robjects/lib/grdevices.pyo ${PYSITELIB}/rpy2/robjects/lib/grid.py ${PYSITELIB}/rpy2/robjects/lib/grid.pyc ${PYSITELIB}/rpy2/robjects/lib/grid.pyo +${PYSITELIB}/rpy2/robjects/lib/test_dplyr.py +${PYSITELIB}/rpy2/robjects/lib/test_dplyr.pyc +${PYSITELIB}/rpy2/robjects/lib/test_dplyr.pyo ${PYSITELIB}/rpy2/robjects/lib/tests/__init__.py ${PYSITELIB}/rpy2/robjects/lib/tests/__init__.pyc ${PYSITELIB}/rpy2/robjects/lib/tests/__init__.pyo +${PYSITELIB}/rpy2/robjects/lib/tests/test_dplyr.py +${PYSITELIB}/rpy2/robjects/lib/tests/test_dplyr.pyc +${PYSITELIB}/rpy2/robjects/lib/tests/test_dplyr.pyo ${PYSITELIB}/rpy2/robjects/lib/tests/test_ggplot2.py ${PYSITELIB}/rpy2/robjects/lib/tests/test_ggplot2.pyc ${PYSITELIB}/rpy2/robjects/lib/tests/test_ggplot2.pyo +${PYSITELIB}/rpy2/robjects/lib/tests/test_grdevices.py +${PYSITELIB}/rpy2/robjects/lib/tests/test_grdevices.pyc +${PYSITELIB}/rpy2/robjects/lib/tests/test_grdevices.pyo +${PYSITELIB}/rpy2/robjects/lib/tidyr.py +${PYSITELIB}/rpy2/robjects/lib/tidyr.pyc +${PYSITELIB}/rpy2/robjects/lib/tidyr.pyo ${PYSITELIB}/rpy2/robjects/methods.py ${PYSITELIB}/rpy2/robjects/methods.pyc ${PYSITELIB}/rpy2/robjects/methods.pyo @@ -201,6 +222,9 @@ ${PYSITELIB}/rpy2/robjects/vectors.pyo ${PYSITELIB}/rpy2/rpy_classic.py ${PYSITELIB}/rpy2/rpy_classic.pyc ${PYSITELIB}/rpy2/rpy_classic.pyo +${PYSITELIB}/rpy2/situation.py +${PYSITELIB}/rpy2/situation.pyc +${PYSITELIB}/rpy2/situation.pyo ${PYSITELIB}/rpy2/tests.py ${PYSITELIB}/rpy2/tests.pyc ${PYSITELIB}/rpy2/tests.pyo diff --git a/math/py-rpy/distinfo b/math/py-rpy/distinfo index 215c4a80a1d..e4a4705e994 100644 --- a/math/py-rpy/distinfo +++ b/math/py-rpy/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.13 2015/11/03 23:33:43 agc Exp $ +$NetBSD: distinfo,v 1.14 2017/10/18 16:17:12 adam Exp $ -SHA1 (rpy2-2.5.6.tar.gz) = d4a664b21b61b12608d9ff6714a087b43039e89e -RMD160 (rpy2-2.5.6.tar.gz) = ea13cf5379c025bbd7f8654c2cad0037196cf7a1 -SHA512 (rpy2-2.5.6.tar.gz) = 27d0b10de0aafc5de166606fb205d1ec49ff573793ba4996732a408d0df33e4dec08d283abdccdfb6d41da757ef4090e10fc4a94d3b064fa9326522062466790 -Size (rpy2-2.5.6.tar.gz) = 165070 bytes +SHA1 (rpy2-2.9.0.tar.gz) = 6ebe536f24a3a171b939e5a4fe62577a15fe48b5 +RMD160 (rpy2-2.9.0.tar.gz) = 94f55b341b47f2a29e785c72a0596ef6014b7cf2 +SHA512 (rpy2-2.9.0.tar.gz) = 55be876fb7316a08f507f3a332ed29d71b52f733c1986482f141e694d66d0e01a51a9c3f0260f6fe0086d7bfbc1f58b678cda4570665e4f1ffdb120c793ef1b2 +Size (rpy2-2.9.0.tar.gz) = 193062 bytes |