py-numpy: updated to 1.16.1

1.16.1:
* BUG: Check paths are unicode, bytes or path-like
* ENH: add mm->q floordiv
* ENH: port np.core.overrides to C for speed
* BUG: Ensure probabilities are not NaN in choice
* MAINT: add warning to numpy.distutils for LDFLAGS append behavior.
* ENH: add "max difference" messages to np.testing.assert_array_equal...
* BUG: Fix incorrect/missing reference cleanups found using valgrind
  that wraps subprocess
* DOC, TST: Clean up matplotlib imports
* BUG: Fix reference counting for subarrays containing objects
* BUG: Ensure failing memory allocations are reported
* BUG: Fix leak of void scalar buffer info
* MAINT: Change the order of checking for local file.
* BUG: loosen kwargs requirements in ediff1d
* DOC: clarify the extend of __array_function__ support in NumPy...
* BUG: Check that dtype or formats arguments are not None.
* BUG: fix f2py problem to build wrappers using PGI's Fortran
* BUG: double decref of dtype in failure codepath. Test and fix
* BUG, DOC: test, fix that f2py.compile accepts str and bytes,...
* BUG: resolve writeback in arr_insert failure paths
* ENH: Add mm->qm divmod
* BUG: Fix SystemError when pickling datetime64 array with pickle5
* BUG: Fix rounding of denormals in double and float to half casts.
* TEST: pin mingw version
* BUG: ndarrays pickled by 1.16 cannot be loaded by 1.15.4 and...
* BUG: do not Py_DECREF NULL pointer
* ENH: add _dtype_ctype to namespace for freeze analysis
* BUG: fail if old multiarray module detected
* BUG: Do not double-quote arguments passed on to the linker
* BUG: Do not insert extra double quote into preprocessor macros

6 files changed, 27 insertions, 63 deletions

diff --git a/math/py-numpy/Makefile b/math/py-numpy/Makefile
index 6d18c1da282..1a9d8962a89 100644
--- a/math/py-numpy/Makefile
+++ b/math/py-numpy/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.57 2019/01/15 21:36:57 adam Exp $
+# $NetBSD: Makefile,v 1.58 2019/02/01 09:24:24 adam Exp $
 
-DISTNAME=	numpy-1.16.0
+DISTNAME=	numpy-1.16.1
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=n/numpy/}
diff --git a/math/py-numpy/PLIST b/math/py-numpy/PLIST
index 7c4058a5d40..49e83df3d73 100644
--- a/math/py-numpy/PLIST
+++ b/math/py-numpy/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.24 2019/01/15 21:36:57 adam Exp $
+@comment $NetBSD: PLIST,v 1.25 2019/02/01 09:24:24 adam Exp $
 bin/f2py${PYVERSSUFFIX}
 ${PLIST.py2x}bin/f2py2
 ${PLIST.py3x}bin/f2py3
@@ -63,6 +63,7 @@ ${PYSITELIB}/numpy/core/_internal.pyo
 ${PYSITELIB}/numpy/core/_methods.py
 ${PYSITELIB}/numpy/core/_methods.pyc
 ${PYSITELIB}/numpy/core/_methods.pyo
+${PYSITELIB}/numpy/core/_multiarray_module_test.so
 ${PYSITELIB}/numpy/core/_multiarray_tests.so
 ${PYSITELIB}/numpy/core/_multiarray_umath.so
 ${PYSITELIB}/numpy/core/_operand_flag_tests.so
diff --git a/math/py-numpy/distinfo b/math/py-numpy/distinfo
index cd70c67f546..7d3f4c7622b 100644
--- a/math/py-numpy/distinfo
+++ b/math/py-numpy/distinfo
@@ -1,11 +1,11 @@
-$NetBSD: distinfo,v 1.40 2019/01/24 22:27:10 maya Exp $
+$NetBSD: distinfo,v 1.41 2019/02/01 09:24:24 adam Exp $
 
-SHA1 (numpy-1.16.0.zip) = 1a0f1faf9dea25c45ac691482051a3f81d094bd8
-RMD160 (numpy-1.16.0.zip) = fae6dfa563045508d509d26510f3d9d9772aad45
-SHA512 (numpy-1.16.0.zip) = a252748c54b349319c8b8b69aae8f58853ac698a9ad0fb04fd1150db543910f25bc88bb3ca73d3d51d0658ab9379756870bc7b24bbaf58ffb8717d80366a4c52
-Size (numpy-1.16.0.zip) = 5052439 bytes
-SHA1 (patch-aa) = e783263f1e3743aa79edd0b983e292a8646ef22e
-SHA1 (patch-ab) = b421455fdbb666c8075d8bffbeb59533434d23e6
+SHA1 (numpy-1.16.1.zip) = 49787ce8e31aff103a7b182749abc3c0249b7f72
+RMD160 (numpy-1.16.1.zip) = dd59773e393c7a41c7286b2ca93e13a415c830ec
+SHA512 (numpy-1.16.1.zip) = e4adce4f40a3cb6ac482f82db9fcd079179b03b0e878920cfc7d98b9f622adab997c68af892b209f417d5f31b4123a1c5ff5c07cf5b0aaa496d8be6c8354bde8
+Size (numpy-1.16.1.zip) = 5070040 bytes
+SHA1 (patch-numpy_distutils_fcompiler_____init____.py) = 49d070da5b48bd9818b37ac3254341fa68503c53
 SHA1 (patch-numpy_distutils_fcompiler_g95.py) = be73b64a3e551df998b6a904d6db762bf28a98ed
 SHA1 (patch-numpy_distutils_fcompiler_gnu.py) = db8d3238c618ecd5900650a2150efb9459e94e96
 SHA1 (patch-numpy_distutils_system__info.py) = dfd88a140b65a66c222a95ea4be6f20a33702e3b
+SHA1 (patch-numpy_linalg_lapack__litemodule.c) = b421455fdbb666c8075d8bffbeb59533434d23e6
diff --git a/math/py-numpy/patches/patch-aa b/math/py-numpy/patches/patch-aa
deleted file mode 100644
index c8f4efde752..00000000000
--- a/math/py-numpy/patches/patch-aa
+++ /dev/null
@@ -1,52 +0,0 @@
-$NetBSD: patch-aa,v 1.6 2019/01/24 22:27:10 maya Exp $
-
-Recognize g95
-
-Backport upstream commit (fixes hang):
-https://github.com/numpy/numpy/commit/5aa8b84aca5fda0438c4357d7d17ae4fcc926a46
-
---- numpy/distutils/fcompiler/__init__.py.orig	2013-04-07 05:04:05.000000000 +0000
-+++ numpy/distutils/fcompiler/__init__.py
-@@ -466,10 +466,8 @@ class FCompiler(CCompiler):
-         noarch = self.distutils_vars.get('noarch', noopt)
-         debug = self.distutils_vars.get('debug', False)
- 
--        f77 = shlex.split(self.command_vars.compiler_f77,
--                          posix=(os.name == 'posix'))
--        f90 = shlex.split(self.command_vars.compiler_f90,
--                          posix=(os.name == 'posix'))
-+        f77 = self.command_vars.compiler_f77
-+        f90 = self.command_vars.compiler_f90
- 
-         f77flags = []
-         f90flags = []
-@@ -477,8 +475,10 @@ class FCompiler(CCompiler):
-         fixflags = []
- 
-         if f77:
-+            f77 = shlex.split(f77, posix=(os.name == 'posix'))
-             f77flags = self.flag_vars.f77
-         if f90:
-+            f90 = shlex.split(f90, posix=(os.name == 'posix'))
-             f90flags = self.flag_vars.f90
-             freeflags = self.flag_vars.free
-         # XXX Assuming that free format is default for f90 compiler.
-@@ -490,8 +490,8 @@ class FCompiler(CCompiler):
-         # environment variable has been customized by CI or a user
-         # should perhaps eventually be more throughly tested and more
-         # robustly handled
--        fix = shlex.split(fix, posix=(os.name == 'posix'))
-         if fix:
-+            fix = shlex.split(fix, posix=(os.name == 'posix'))
-             fixflags = self.flag_vars.fix + f90flags
- 
-         oflags, aflags, dflags = [], [], []
-@@ -756,7 +756,7 @@ _default_compilers = (
-     ('irix.*', ('mips', 'gnu', 'gnu95',)),
-     ('aix.*', ('ibm', 'gnu', 'gnu95',)),
-     # os.name mappings
--    ('posix', ('gnu', 'gnu95',)),
-+    ('posix', ('gnu', 'gnu95', 'g95',)),
-     ('nt', ('gnu', 'gnu95',)),
-     ('mac', ('gnu95', 'gnu', 'pg')),
-     )
diff --git a/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py b/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py
new file mode 100644
index 00000000000..43d437eba68
--- /dev/null
+++ b/math/py-numpy/patches/patch-numpy_distutils_fcompiler_____init____.py
@@ -0,0 +1,15 @@
+$NetBSD: patch-numpy_distutils_fcompiler_____init____.py,v 1.1 2019/02/01 09:24:25 adam Exp $
+
+Recognize g95.
+
+--- numpy/distutils/fcompiler/__init__.py.orig	2013-04-07 05:04:05.000000000 +0000
++++ numpy/distutils/fcompiler/__init__.py
+@@ -756,7 +756,7 @@ _default_compilers = (
+     ('irix.*', ('mips', 'gnu', 'gnu95',)),
+     ('aix.*', ('ibm', 'gnu', 'gnu95',)),
+     # os.name mappings
+-    ('posix', ('gnu', 'gnu95',)),
++    ('posix', ('gnu', 'gnu95', 'g95',)),
+     ('nt', ('gnu', 'gnu95',)),
+     ('mac', ('gnu95', 'gnu', 'pg')),
+     )
diff --git a/math/py-numpy/patches/patch-ab b/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c
index 5d526c1b41a..90c9a239884 100644
--- a/math/py-numpy/patches/patch-ab
+++ b/math/py-numpy/patches/patch-numpy_linalg_lapack__litemodule.c
@@ -1,4 +1,4 @@
-$NetBSD: patch-ab,v 1.4 2016/07/24 15:25:22 kamil Exp $
+$NetBSD: patch-numpy_linalg_lapack__litemodule.c,v 1.1 2019/02/01 09:24:25 adam Exp $
 
 Add function definition for FNAME(MAIN_).