py-scipy: updated to 1.4.1

SciPy 1.4.1 is a bug-fix release with no new features
compared to 1.4.0. Importantly, it aims to fix a problem
where an older version of pybind11 may cause a segmentation
fault when imported alongside incompatible libraries.

SciPy 1.4.0 is the culmination of 6 months of hard work. It contains
many new features, numerous bug-fixes, improved test coverage and better
documentation. There have been a number of deprecations and API changes
in this release, which are documented below. All users are encouraged to
upgrade to this release, as there are a large number of bug-fixes and
optimizations. Before upgrading, we recommend that users check that
their own code does not use deprecated SciPy functionality (to do so,
run your code with ``python -Wd`` and check for ``DeprecationWarning`` s).
Our development attention will now shift to bug-fix releases on the
1.4.x branch, and on adding new features on the master branch.

3 files changed, 131 insertions, 23 deletions

diff --git a/math/py-scipy/Makefile b/math/py-scipy/Makefile
index 00d78e4cb37..1b8d1e7b2ab 100644
--- a/math/py-scipy/Makefile
+++ b/math/py-scipy/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.40 2019/11/04 17:47:30 rillig Exp $
+# $NetBSD: Makefile,v 1.41 2020/04/28 09:45:27 adam Exp $
 
-DISTNAME=	scipy-1.3.0
+DISTNAME=	scipy-1.4.1
 PKGNAME=	${PYPKGPREFIX}-${DISTNAME}
 CATEGORIES=	math python
 MASTER_SITES=	${MASTER_SITE_PYPI:=s/scipy/}
@@ -10,17 +10,18 @@ HOMEPAGE=	https://www.scipy.org/
 COMMENT=	Scientific Algorithms Library for Python
 LICENSE=	modified-bsd
 
+DEPENDS+=	${PYPKGPREFIX}-pybind11-[0-9]*:../../devel/py-pybind11
+TEST_DEPENDS+=	${PYPKGPREFIX}-nose-[0-9]*:../../devel/py-nose
+TEST_DEPENDS+=	${PYPKGPREFIX}-test-[0-9]*:../../devel/py-test
+
 USE_LANGUAGES+=	c c++ fortran
 MAKE_ENV+=	ATLAS=None
 
 # XXX Avoid picking up other compilers when installed
 .include "../../mk/compiler.mk"
 
-.if defined(PKGSRC_FORTRAN) && ${PKGSRC_FORTRAN} == "g95"
-PYSETUPBUILDARGS+=	--fcompiler=g95
-.elif defined(PKGSRC_FORTRAN) && ${PKGSRC_FORTRAN} == "gfortran"
+.if defined(PKGSRC_FORTRAN) && ${PKGSRC_FORTRAN} == "gfortran"
 PYSETUPBUILDARGS+=	--fcompiler=gnu95
-LDFLAGS.Darwin+=	-undefined dynamic_lookup
 .else
 BROKEN=			"Requires fortran 95"
 .endif
@@ -48,9 +49,6 @@ fix-darwin-install-name:
 	done
 .endif
 
-TEST_DEPENDS+=	${PYPKGPREFIX}-nose-[0-9]*:../../devel/py-nose
-TEST_DEPENDS+=	${PYPKGPREFIX}-test-[0-9]*:../../devel/py-test
-
 # self test failures for 1.1.0 reported at
 # https://github.com/scipy/scipy/issues/9196
 # needs 'make install' first!
@@ -58,12 +56,13 @@ do-test:
 	cd ${WRKDIR} && \
 	${PYTHONBIN} -c "import scipy; scipy.test('full')"
 
+.include "../../devel/py-cython/buildlink3.mk"
+.include "../../devel/py-pybind11/buildlink3.mk"
 .include "../../lang/python/application.mk"
 .include "../../lang/python/distutils.mk"
-.include "../../devel/py-cython/buildlink3.mk"
 .include "../../math/blas/buildlink3.mk"
 .include "../../math/fftw/buildlink3.mk"
 .include "../../math/lapack/buildlink3.mk"
-BUILDLINK_API_DEPENDS.py-numpy+=	${PYPKGPREFIX}-numpy>=1.8.2
+BUILDLINK_API_DEPENDS.py-numpy+=	${PYPKGPREFIX}-numpy>=1.17.3
 .include "../../math/py-numpy/buildlink3.mk"
 .include "../../mk/bsd.pkg.mk"
diff --git a/math/py-scipy/PLIST b/math/py-scipy/PLIST
index 0e31eb55d35..02d4f9b28be 100644
--- a/math/py-scipy/PLIST
+++ b/math/py-scipy/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.15 2019/06/14 14:53:29 adam Exp $
+@comment $NetBSD: PLIST,v 1.16 2020/04/28 09:45:27 adam Exp $
 ${PYSITELIB}/${EGG_FILE}/PKG-INFO
 ${PYSITELIB}/${EGG_FILE}/SOURCES.txt
 ${PYSITELIB}/${EGG_FILE}/dependency_links.txt
@@ -19,9 +19,18 @@ ${PYSITELIB}/scipy/_build_utils/__init__.pyo
 ${PYSITELIB}/scipy/_build_utils/_fortran.py
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyc
 ${PYSITELIB}/scipy/_build_utils/_fortran.pyo
+${PYSITELIB}/scipy/_build_utils/compiler_helper.py
+${PYSITELIB}/scipy/_build_utils/compiler_helper.pyc
+${PYSITELIB}/scipy/_build_utils/compiler_helper.pyo
+${PYSITELIB}/scipy/_build_utils/setup.py
+${PYSITELIB}/scipy/_build_utils/setup.pyc
+${PYSITELIB}/scipy/_build_utils/setup.pyo
 ${PYSITELIB}/scipy/_build_utils/system_info.py
 ${PYSITELIB}/scipy/_build_utils/system_info.pyc
 ${PYSITELIB}/scipy/_build_utils/system_info.pyo
+${PYSITELIB}/scipy/_build_utils/tests/__init__.py
+${PYSITELIB}/scipy/_build_utils/tests/test_circular_imports.py
+${PYSITELIB}/scipy/_build_utils/tests/test_scipy_version.py
 ${PYSITELIB}/scipy/_distributor_init.py
 ${PYSITELIB}/scipy/_distributor_init.pyc
 ${PYSITELIB}/scipy/_distributor_init.pyo
@@ -39,6 +48,9 @@ ${PYSITELIB}/scipy/_lib/_gcutils.pyo
 ${PYSITELIB}/scipy/_lib/_numpy_compat.py
 ${PYSITELIB}/scipy/_lib/_numpy_compat.pyc
 ${PYSITELIB}/scipy/_lib/_numpy_compat.pyo
+${PYSITELIB}/scipy/_lib/_pep440.py
+${PYSITELIB}/scipy/_lib/_pep440.pyc
+${PYSITELIB}/scipy/_lib/_pep440.pyo
 ${PYSITELIB}/scipy/_lib/_test_ccallback.so
 ${PYSITELIB}/scipy/_lib/_testutils.py
 ${PYSITELIB}/scipy/_lib/_testutils.pyc
@@ -49,6 +61,17 @@ ${PYSITELIB}/scipy/_lib/_threadsafety.pyo
 ${PYSITELIB}/scipy/_lib/_tmpdirs.py
 ${PYSITELIB}/scipy/_lib/_tmpdirs.pyc
 ${PYSITELIB}/scipy/_lib/_tmpdirs.pyo
+${PYSITELIB}/scipy/_lib/_uarray/LICENSE
+${PYSITELIB}/scipy/_lib/_uarray/__init__.py
+${PYSITELIB}/scipy/_lib/_uarray/__init__.pyc
+${PYSITELIB}/scipy/_lib/_uarray/__init__.pyo
+${PYSITELIB}/scipy/_lib/_uarray/_backend.py
+${PYSITELIB}/scipy/_lib/_uarray/_backend.pyc
+${PYSITELIB}/scipy/_lib/_uarray/_backend.pyo
+${PYSITELIB}/scipy/_lib/_uarray/_uarray.so
+${PYSITELIB}/scipy/_lib/_uarray/setup.py
+${PYSITELIB}/scipy/_lib/_uarray/setup.pyc
+${PYSITELIB}/scipy/_lib/_uarray/setup.pyo
 ${PYSITELIB}/scipy/_lib/_util.py
 ${PYSITELIB}/scipy/_lib/_util.pyc
 ${PYSITELIB}/scipy/_lib/_util.pyo
@@ -58,6 +81,9 @@ ${PYSITELIB}/scipy/_lib/_version.pyo
 ${PYSITELIB}/scipy/_lib/decorator.py
 ${PYSITELIB}/scipy/_lib/decorator.pyc
 ${PYSITELIB}/scipy/_lib/decorator.pyo
+${PYSITELIB}/scipy/_lib/deprecation.py
+${PYSITELIB}/scipy/_lib/deprecation.pyc
+${PYSITELIB}/scipy/_lib/deprecation.pyo
 ${PYSITELIB}/scipy/_lib/doccer.py
 ${PYSITELIB}/scipy/_lib/doccer.pyc
 ${PYSITELIB}/scipy/_lib/doccer.pyo
@@ -78,6 +104,9 @@ ${PYSITELIB}/scipy/_lib/tests/test_ccallback.py
 ${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py
 ${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py
 ${PYSITELIB}/scipy/_lib/tests/test_warnings.py
+${PYSITELIB}/scipy/_lib/uarray.py
+${PYSITELIB}/scipy/_lib/uarray.pyc
+${PYSITELIB}/scipy/_lib/uarray.pyo
 ${PYSITELIB}/scipy/cluster/__init__.py
 ${PYSITELIB}/scipy/cluster/__init__.pyc
 ${PYSITELIB}/scipy/cluster/__init__.pyo
@@ -115,10 +144,57 @@ ${PYSITELIB}/scipy/constants/setup.pyo
 ${PYSITELIB}/scipy/constants/tests/__init__.py
 ${PYSITELIB}/scipy/constants/tests/test_codata.py
 ${PYSITELIB}/scipy/constants/tests/test_constants.py
+${PYSITELIB}/scipy/fft/__init__.py
+${PYSITELIB}/scipy/fft/__init__.pyc
+${PYSITELIB}/scipy/fft/__init__.pyo
+${PYSITELIB}/scipy/fft/_backend.py
+${PYSITELIB}/scipy/fft/_backend.pyc
+${PYSITELIB}/scipy/fft/_backend.pyo
+${PYSITELIB}/scipy/fft/_basic.py
+${PYSITELIB}/scipy/fft/_basic.pyc
+${PYSITELIB}/scipy/fft/_basic.pyo
+${PYSITELIB}/scipy/fft/_debug_backends.py
+${PYSITELIB}/scipy/fft/_debug_backends.pyc
+${PYSITELIB}/scipy/fft/_debug_backends.pyo
+${PYSITELIB}/scipy/fft/_helper.py
+${PYSITELIB}/scipy/fft/_helper.pyc
+${PYSITELIB}/scipy/fft/_helper.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/LICENSE.md
+${PYSITELIB}/scipy/fft/_pocketfft/__init__.py
+${PYSITELIB}/scipy/fft/_pocketfft/__init__.pyc
+${PYSITELIB}/scipy/fft/_pocketfft/__init__.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/basic.py
+${PYSITELIB}/scipy/fft/_pocketfft/basic.pyc
+${PYSITELIB}/scipy/fft/_pocketfft/basic.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/helper.py
+${PYSITELIB}/scipy/fft/_pocketfft/helper.pyc
+${PYSITELIB}/scipy/fft/_pocketfft/helper.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/pypocketfft.so
+${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.py
+${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.pyc
+${PYSITELIB}/scipy/fft/_pocketfft/realtransforms.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/setup.py
+${PYSITELIB}/scipy/fft/_pocketfft/setup.pyc
+${PYSITELIB}/scipy/fft/_pocketfft/setup.pyo
+${PYSITELIB}/scipy/fft/_pocketfft/tests/__init__.py
+${PYSITELIB}/scipy/fft/_pocketfft/tests/test_basic.py
+${PYSITELIB}/scipy/fft/_pocketfft/tests/test_real_transforms.py
+${PYSITELIB}/scipy/fft/_realtransforms.py
+${PYSITELIB}/scipy/fft/_realtransforms.pyc
+${PYSITELIB}/scipy/fft/_realtransforms.pyo
+${PYSITELIB}/scipy/fft/setup.py
+${PYSITELIB}/scipy/fft/setup.pyc
+${PYSITELIB}/scipy/fft/setup.pyo
+${PYSITELIB}/scipy/fft/tests/mock_backend.py
+${PYSITELIB}/scipy/fft/tests/test_backend.py
+${PYSITELIB}/scipy/fft/tests/test_fft_function.py
+${PYSITELIB}/scipy/fft/tests/test_helper.py
+${PYSITELIB}/scipy/fft/tests/test_multithreading.py
+${PYSITELIB}/scipy/fft/tests/test_numpy.py
+${PYSITELIB}/scipy/fft/tests/test_real_transforms.py
 ${PYSITELIB}/scipy/fftpack/__init__.py
 ${PYSITELIB}/scipy/fftpack/__init__.pyc
 ${PYSITELIB}/scipy/fftpack/__init__.pyo
-${PYSITELIB}/scipy/fftpack/_fftpack.so
 ${PYSITELIB}/scipy/fftpack/basic.py
 ${PYSITELIB}/scipy/fftpack/basic.pyc
 ${PYSITELIB}/scipy/fftpack/basic.pyo
@@ -139,6 +215,7 @@ ${PYSITELIB}/scipy/fftpack/tests/Makefile
 ${PYSITELIB}/scipy/fftpack/tests/__init__.py
 ${PYSITELIB}/scipy/fftpack/tests/fftw_dct.c
 ${PYSITELIB}/scipy/fftpack/tests/fftw_double_ref.npz
+${PYSITELIB}/scipy/fftpack/tests/fftw_longdouble_ref.npz
 ${PYSITELIB}/scipy/fftpack/tests/fftw_single_ref.npz
 ${PYSITELIB}/scipy/fftpack/tests/gen_fftw_ref.py
 ${PYSITELIB}/scipy/fftpack/tests/gendata.m
@@ -168,6 +245,9 @@ ${PYSITELIB}/scipy/integrate/_ivp/bdf.pyo
 ${PYSITELIB}/scipy/integrate/_ivp/common.py
 ${PYSITELIB}/scipy/integrate/_ivp/common.pyc
 ${PYSITELIB}/scipy/integrate/_ivp/common.pyo
+${PYSITELIB}/scipy/integrate/_ivp/dop853_coefficients.py
+${PYSITELIB}/scipy/integrate/_ivp/dop853_coefficients.pyc
+${PYSITELIB}/scipy/integrate/_ivp/dop853_coefficients.pyo
 ${PYSITELIB}/scipy/integrate/_ivp/ivp.py
 ${PYSITELIB}/scipy/integrate/_ivp/ivp.pyc
 ${PYSITELIB}/scipy/integrate/_ivp/ivp.pyo
@@ -184,6 +264,9 @@ ${PYSITELIB}/scipy/integrate/_ode.py
 ${PYSITELIB}/scipy/integrate/_ode.pyc
 ${PYSITELIB}/scipy/integrate/_ode.pyo
 ${PYSITELIB}/scipy/integrate/_odepack.so
+${PYSITELIB}/scipy/integrate/_quad_vec.py
+${PYSITELIB}/scipy/integrate/_quad_vec.pyc
+${PYSITELIB}/scipy/integrate/_quad_vec.pyo
 ${PYSITELIB}/scipy/integrate/_quadpack.so
 ${PYSITELIB}/scipy/integrate/_test_multivariate.so
 ${PYSITELIB}/scipy/integrate/_test_odeint_banded.so
@@ -203,10 +286,10 @@ ${PYSITELIB}/scipy/integrate/setup.pyo
 ${PYSITELIB}/scipy/integrate/tests/__init__.py
 ${PYSITELIB}/scipy/integrate/tests/_test_multivariate.c
 ${PYSITELIB}/scipy/integrate/tests/banded5x5.f
+${PYSITELIB}/scipy/integrate/tests/test__quad_vec.py
 ${PYSITELIB}/scipy/integrate/tests/test_banded_ode_solvers.py
 ${PYSITELIB}/scipy/integrate/tests/test_bvp.py
 ${PYSITELIB}/scipy/integrate/tests/test_integrate.py
-${PYSITELIB}/scipy/integrate/tests/test_ivp.py
 ${PYSITELIB}/scipy/integrate/tests/test_odeint_jac.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadpack.py
 ${PYSITELIB}/scipy/integrate/tests/test_quadrature.py
@@ -289,6 +372,8 @@ ${PYSITELIB}/scipy/io/arff/tests/__init__.py
 ${PYSITELIB}/scipy/io/arff/tests/data/iris.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/missing.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/nodata.arff
+${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal.arff
+${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal_spaces.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test1.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test10.arff
 ${PYSITELIB}/scipy/io/arff/tests/data/test2.arff
@@ -542,6 +627,7 @@ ${PYSITELIB}/scipy/io/tests/data/struct_scalars_replicated.sav
 ${PYSITELIB}/scipy/io/tests/data/struct_scalars_replicated_3d.sav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-be.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-le.wav
+${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof-no-data.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav
 ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav
@@ -793,9 +879,6 @@ ${PYSITELIB}/scipy/optimize/_group_columns.so
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.py
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyc
 ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyo
-${PYSITELIB}/scipy/optimize/_hungarian.py
-${PYSITELIB}/scipy/optimize/_hungarian.pyc
-${PYSITELIB}/scipy/optimize/_hungarian.pyo
 ${PYSITELIB}/scipy/optimize/_lbfgsb.so
 ${PYSITELIB}/scipy/optimize/_linprog.py
 ${PYSITELIB}/scipy/optimize/_linprog.pyc
@@ -812,6 +895,10 @@ ${PYSITELIB}/scipy/optimize/_linprog_simplex.pyo
 ${PYSITELIB}/scipy/optimize/_linprog_util.py
 ${PYSITELIB}/scipy/optimize/_linprog_util.pyc
 ${PYSITELIB}/scipy/optimize/_linprog_util.pyo
+${PYSITELIB}/scipy/optimize/_lsap.py
+${PYSITELIB}/scipy/optimize/_lsap.pyc
+${PYSITELIB}/scipy/optimize/_lsap.pyo
+${PYSITELIB}/scipy/optimize/_lsap_module.so
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.py
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.pyc
 ${PYSITELIB}/scipy/optimize/_lsq/__init__.pyo
@@ -912,6 +999,7 @@ ${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/__init__.py
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_canonical_constraint.py
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_projections.py
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_qp_subproblem.py
+${PYSITELIB}/scipy/optimize/_trustregion_constr/tests/test_report.py
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.py
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.pyc
 ${PYSITELIB}/scipy/optimize/_trustregion_constr/tr_interior_point.pyo
@@ -984,9 +1072,9 @@ ${PYSITELIB}/scipy/optimize/tests/test_constraints.py
 ${PYSITELIB}/scipy/optimize/tests/test_cython_optimize.py
 ${PYSITELIB}/scipy/optimize/tests/test_differentiable_functions.py
 ${PYSITELIB}/scipy/optimize/tests/test_hessian_update_strategy.py
-${PYSITELIB}/scipy/optimize/tests/test_hungarian.py
 ${PYSITELIB}/scipy/optimize/tests/test_lbfgsb_hessinv.py
 ${PYSITELIB}/scipy/optimize/tests/test_least_squares.py
+${PYSITELIB}/scipy/optimize/tests/test_linear_assignment.py
 ${PYSITELIB}/scipy/optimize/tests/test_linesearch.py
 ${PYSITELIB}/scipy/optimize/tests/test_linprog.py
 ${PYSITELIB}/scipy/optimize/tests/test_lsq_common.py
@@ -1029,6 +1117,7 @@ ${PYSITELIB}/scipy/signal/_peak_finding_utils.so
 ${PYSITELIB}/scipy/signal/_savitzky_golay.py
 ${PYSITELIB}/scipy/signal/_savitzky_golay.pyc
 ${PYSITELIB}/scipy/signal/_savitzky_golay.pyo
+${PYSITELIB}/scipy/signal/_sosfilt.so
 ${PYSITELIB}/scipy/signal/_spectral.so
 ${PYSITELIB}/scipy/signal/_upfirdn.py
 ${PYSITELIB}/scipy/signal/_upfirdn.pyc
@@ -1125,9 +1214,11 @@ ${PYSITELIB}/scipy/sparse/csc.pyo
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.py
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.pyc
 ${PYSITELIB}/scipy/sparse/csgraph/__init__.pyo
+${PYSITELIB}/scipy/sparse/csgraph/_flow.so
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.py
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.pyc
 ${PYSITELIB}/scipy/sparse/csgraph/_laplacian.pyo
+${PYSITELIB}/scipy/sparse/csgraph/_matching.so
 ${PYSITELIB}/scipy/sparse/csgraph/_min_spanning_tree.so
 ${PYSITELIB}/scipy/sparse/csgraph/_reordering.so
 ${PYSITELIB}/scipy/sparse/csgraph/_shortest_path.so
@@ -1142,7 +1233,9 @@ ${PYSITELIB}/scipy/sparse/csgraph/setup.pyo
 ${PYSITELIB}/scipy/sparse/csgraph/tests/__init__.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_connected_components.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_conversions.py
+${PYSITELIB}/scipy/sparse/csgraph/tests/test_flow.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_graph_laplacian.py
+${PYSITELIB}/scipy/sparse/csgraph/tests/test_matching.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_reordering.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_shortest_path.py
 ${PYSITELIB}/scipy/sparse/csgraph/tests/test_spanning_tree.py
@@ -1278,6 +1371,7 @@ ${PYSITELIB}/scipy/sparse/linalg/tests/test_interface.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_matfuncs.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_norm.py
 ${PYSITELIB}/scipy/sparse/linalg/tests/test_onenormest.py
+${PYSITELIB}/scipy/sparse/linalg/tests/test_pydata_sparse.py
 ${PYSITELIB}/scipy/sparse/setup.py
 ${PYSITELIB}/scipy/sparse/setup.pyc
 ${PYSITELIB}/scipy/sparse/setup.pyo
@@ -1371,6 +1465,9 @@ ${PYSITELIB}/scipy/spatial/tests/test_spherical_voronoi.py
 ${PYSITELIB}/scipy/spatial/transform/__init__.py
 ${PYSITELIB}/scipy/spatial/transform/__init__.pyc
 ${PYSITELIB}/scipy/spatial/transform/__init__.pyo
+${PYSITELIB}/scipy/spatial/transform/_rotation_groups.py
+${PYSITELIB}/scipy/spatial/transform/_rotation_groups.pyc
+${PYSITELIB}/scipy/spatial/transform/_rotation_groups.pyo
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.py
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyc
 ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyo
@@ -1382,11 +1479,15 @@ ${PYSITELIB}/scipy/spatial/transform/setup.pyc
 ${PYSITELIB}/scipy/spatial/transform/setup.pyo
 ${PYSITELIB}/scipy/spatial/transform/tests/__init__.py
 ${PYSITELIB}/scipy/spatial/transform/tests/test_rotation.py
+${PYSITELIB}/scipy/spatial/transform/tests/test_rotation_groups.py
 ${PYSITELIB}/scipy/spatial/transform/tests/test_rotation_spline.py
 ${PYSITELIB}/scipy/special.pxd
 ${PYSITELIB}/scipy/special/__init__.py
 ${PYSITELIB}/scipy/special/__init__.pyc
 ${PYSITELIB}/scipy/special/__init__.pyo
+${PYSITELIB}/scipy/special/_basic.py
+${PYSITELIB}/scipy/special/_basic.pyc
+${PYSITELIB}/scipy/special/_basic.pyo
 ${PYSITELIB}/scipy/special/_comb.so
 ${PYSITELIB}/scipy/special/_ellip_harm.py
 ${PYSITELIB}/scipy/special/_ellip_harm.pyc
@@ -1428,6 +1529,9 @@ ${PYSITELIB}/scipy/special/_precompute/struve_convergence.pyo
 ${PYSITELIB}/scipy/special/_precompute/utils.py
 ${PYSITELIB}/scipy/special/_precompute/utils.pyc
 ${PYSITELIB}/scipy/special/_precompute/utils.pyo
+${PYSITELIB}/scipy/special/_precompute/wrightomega.py
+${PYSITELIB}/scipy/special/_precompute/wrightomega.pyc
+${PYSITELIB}/scipy/special/_precompute/wrightomega.pyo
 ${PYSITELIB}/scipy/special/_precompute/zetac.py
 ${PYSITELIB}/scipy/special/_precompute/zetac.pyc
 ${PYSITELIB}/scipy/special/_precompute/zetac.pyo
@@ -1476,7 +1580,10 @@ ${PYSITELIB}/scipy/special/tests/test_cython_special.py
 ${PYSITELIB}/scipy/special/tests/test_data.py
 ${PYSITELIB}/scipy/special/tests/test_digamma.py
 ${PYSITELIB}/scipy/special/tests/test_ellip_harm.py
+${PYSITELIB}/scipy/special/tests/test_exponential_integrals.py
+${PYSITELIB}/scipy/special/tests/test_faddeeva.py
 ${PYSITELIB}/scipy/special/tests/test_gammainc.py
+${PYSITELIB}/scipy/special/tests/test_hypergeometric.py
 ${PYSITELIB}/scipy/special/tests/test_kolmogorov.py
 ${PYSITELIB}/scipy/special/tests/test_lambertw.py
 ${PYSITELIB}/scipy/special/tests/test_loggamma.py
@@ -1484,10 +1591,12 @@ ${PYSITELIB}/scipy/special/tests/test_logit.py
 ${PYSITELIB}/scipy/special/tests/test_logsumexp.py
 ${PYSITELIB}/scipy/special/tests/test_mpmath.py
 ${PYSITELIB}/scipy/special/tests/test_nan_inputs.py
+${PYSITELIB}/scipy/special/tests/test_ndtr.py
 ${PYSITELIB}/scipy/special/tests/test_orthogonal.py
 ${PYSITELIB}/scipy/special/tests/test_orthogonal_eval.py
 ${PYSITELIB}/scipy/special/tests/test_owens_t.py
 ${PYSITELIB}/scipy/special/tests/test_pcf.py
+${PYSITELIB}/scipy/special/tests/test_pdtr.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_expn_asy.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_gammainc.py
 ${PYSITELIB}/scipy/special/tests/test_precompute_utils.py
diff --git a/math/py-scipy/distinfo b/math/py-scipy/distinfo
index 1f0c240a136..d09d535dfde 100644
--- a/math/py-scipy/distinfo
+++ b/math/py-scipy/distinfo
@@ -1,7 +1,7 @@
-$NetBSD: distinfo,v 1.20 2019/06/14 14:53:29 adam Exp $
+$NetBSD: distinfo,v 1.21 2020/04/28 09:45:27 adam Exp $
 
-SHA1 (scipy-1.3.0.tar.gz) = 6c1896c3e2738e940f8be132eb7caef48d85f1dc
-RMD160 (scipy-1.3.0.tar.gz) = deff9efa7ad5807548c53f6ad32f4a0ecf12e07b
-SHA512 (scipy-1.3.0.tar.gz) = 11dfe6027061efb176811d1d2c8b60ee53157f6fff59baa312b3b6a84461123e12f044d5d138d04b1162612d35c6cc34837208d56cdf79c294862ef90c62ea1d
-Size (scipy-1.3.0.tar.gz) = 23620566 bytes
+SHA1 (scipy-1.4.1.tar.gz) = e0ccd8e594ed26a86134c59d93b8f49266cbeb3f
+RMD160 (scipy-1.4.1.tar.gz) = 4a964b5be7ba308ef000e0a5b43966de40c3fc9d
+SHA512 (scipy-1.4.1.tar.gz) = 79407a2cbb4ba29c0941570181df4d7835e5791e50a3abef9b63c2fc5b15308a2e4964eb71cdebbee8cd2dcb8e497cf92fe50ee21fb12cac3013ea5e0466b25d
+Size (scipy-1.4.1.tar.gz) = 24555206 bytes
 SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422